Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1654 Trochodendron aralioides HOM05D007065 ORTHO05D008960 3.5e-92 341.7 177 100.0
MBI13_g15309_MAGBIO Magnolia biondii HOM05D007065 ORTHO05D008960 6.4e-30 134.8 101 76.2
MD07G1026200 Malus domestica HOM05D007065 ORTHO05D008960 6.4e-30 134.8 103 72.8
Nn2g15140 Nelumbo nucifera HOM05D007065 ORTHO05D008960 6.4e-30 134.8 101 76.2
PSO339G2565 Papaver somniferum HOM05D007065 ORTHO05D008960 4.2e-29 132.1 103 70.9
QL04p012215 Quercus lobata HOM05D007065 ORTHO05D008960 9.3e-29 131.0 100 75.0
GSVIVG01001464001 Vitis vinifera HOM05D007065 ORTHO05D008960 2.1e-28 129.8 96 76.0
Aqoxy1G00221 Aquilegia oxysepala HOM05D007065 ORTHO05D008960 2.7e-28 129.4 102 71.6
Lalb_Chr04g0263741 Lupinus albus HOM05D007065 ORTHO05D008960 3.9e-27 125.6 103 69.9
Dinv05022 Davidia involucrata HOM05D007065 ORTHO05D008960 5.1e-27 125.2 98 73.5
PSO384G3763 Papaver somniferum HOM05D007065 ORTHO05D008960 5.1e-27 125.2 103 68.9
MD02G1298000 Malus domestica HOM05D007065 ORTHO05D008960 1.5e-26 123.6 101 69.3
arahy.Tifrunner.gnm1.ann1.D1ESAM Arachis hypogaea HOM05D007065 ORTHO05D008960 3.3e-26 122.5 103 66.0
CiPaw.13G009300 Carya illinoinensis HOM05D007065 ORTHO05D008960 4.3e-26 122.1 107 71.0
Dinv32064 Davidia involucrata HOM05D007065 ORTHO05D008960 4.3e-26 122.1 104 70.2
Psat5g211000 Pisum sativum HOM05D007065 ORTHO05D008960 4.3e-26 122.1 103 66.0
arahy.Tifrunner.gnm1.ann1.ZUZF0V Arachis hypogaea HOM05D007065 ORTHO05D008960 1.3e-25 120.6 103 65.0
FvH4_7g02000 Fragaria vesca HOM05D007065 ORTHO05D008960 1.6e-25 120.2 103 67.0
FAN06G0835 Fragaria x ananassa HOM05D007065 ORTHO05D008960 1.6e-25 120.2 103 67.0
Glyma.11G157140 Glycine max HOM05D007065 ORTHO05D008960 3.7e-25 119.0 103 66.0
Phvul.005G034300 Phaseolus vulgaris HOM05D007065 ORTHO05D008960 4.8e-25 118.6 106 64.2
FAN01G0916 Fragaria x ananassa HOM05D007065 ORTHO05D008960 1.4e-24 117.1 103 66.0
VMungo1080G1068 Vigna mungo HOM05D007065 ORTHO05D008960 1.8e-24 116.7 118 58.5
FAN03G0341 Fragaria x ananassa HOM05D007065 ORTHO05D008960 5.3e-24 115.2 103 65.0
TPR.G15470 Trifolium pratense HOM05D007065 ORTHO05D008960 9.0e-24 114.4 102 62.7
Sc10g0004180 Simmondsia chinensis HOM05D007065 ORTHO05D008960 1.2e-23 114.0 108 64.8
Medtr3g436080 Medicago truncatula HOM05D007065 ORTHO05D008960 3.4e-23 112.5 103 64.1
Actinidia19434 Actinidia chinensis HOM05D007065 ORTHO05D008960 5.8e-23 111.7 90 71.1
Cfa010837 Carpinus fangiana HOM05D007065 ORTHO05D008960 2.9e-22 109.4 104 66.3
Lj3g0026300 Lotus japonicus HOM05D007065 ORTHO05D008960 2.9e-22 109.4 102 65.7
Hma1.2p1_0579F.1_g182650 Hydrangea macrophylla HOM05D007065 ORTHO05D008960 4.9e-22 108.6 94 69.1
Oeu049459.1 Olea europaea HOM05D007065 ORTHO05D008960 4.9e-22 108.6 111 60.4
RcHm_v2.0_Chr1g0318991 Rosa chinensis HOM05D007065 ORTHO05D008960 8.4e-22 107.8 103 63.1
Lj9P644T43 Lonicera japonica HOM05D007065 ORTHO05D008960 4.2e-21 105.5 105 66.7
MSTRG.20552 Avicennia marina HOM05D007065 ORTHO05D008960 5.5e-21 105.1 104 61.5
Ca_14187_v3 Cicer arietinum L. HOM05D007065 ORTHO05D008960 7.1e-21 104.8 125 53.6
vmacro13712 Vaccinium macrocarpon HOM05D007065 ORTHO05D008960 6.0e-20 101.7 90 66.7
Cpa.g.sc197.20 Carica papaya HOM05D007065 ORTHO05D008960 7.9e-20 101.3 103 61.2
ATR1134G106 Amborella trichopoda HOM05D007065 ORTHO05D008960 1.8e-19 100.1 89 65.2
Eucgr.G03272 Eucalyptus grandis HOM05D007065 ORTHO05D008960 2.3e-19 99.8 104 61.5
Hund13309 Selenicereus undatus HOM05D007065 ORTHO05D008960 2.3e-19 99.8 97 60.8
ClCG01G007790 Citrullus lanatus HOM05D007065 ORTHO05D008960 3.0e-19 99.4 124 57.3
Sopen01g035020 Solanum pennellii HOM05D007065 ORTHO05D008960 3.0e-19 99.4 103 58.3
Actinidia06280 Actinidia chinensis HOM05D007065 ORTHO05D008960 3.9e-19 99.0 91 65.9
Oeu027356.1 Olea europaea HOM05D007065 ORTHO05D008960 3.9e-19 99.0 108 57.4
Solyc01g088140.3 Solanum lycopersicum HOM05D007065 ORTHO05D008960 3.9e-19 99.0 103 58.3
MSTRG.17000 Avicennia marina HOM05D007065 ORTHO05D008960 1.1e-18 97.4 98 61.2
AUR62037250 Chenopodium quinoa HOM05D007065 ORTHO05D008960 1.1e-18 97.4 103 60.2
Rhsim07G0061200 Rhododendron simsii HOM05D007065 ORTHO05D008960 1.1e-18 97.4 150 48.7
Cc02_g30050 Coffea canephora HOM05D007065 ORTHO05D008960 1.9e-18 96.7 104 60.6
Nitab4.5_0000316g0330 Nicotiana tabacum HOM05D007065 ORTHO05D008960 4.3e-18 95.5 100 59.0
Nitab4.5_0016351g0020 Nicotiana tabacum HOM05D007065 ORTHO05D008960 4.3e-18 95.5 90 64.4
Ah.12g065220 Amaranthus hybridus HOM05D007065 ORTHO05D008960 7.4e-18 94.7 102 57.8
MELO3C005114.2 Cucumis melo HOM05D007065 ORTHO05D008960 1.3e-17 94.0 124 54.0
CSS0014876 Camellia sinensis var. sinensis HOM05D000388 ORTHO05D000473 1.6e-17 93.6 81 70.4
SalBow5G0133 Salvia bowleyana HOM05D007065 ORTHO05D008960 1.6e-17 93.6 81 65.4
CsaV3_5G024860 Cucumis sativus L. HOM05D007065 ORTHO05D008960 2.8e-17 92.8 101 61.4
PGR031G2384 Punica granatum HOM05D007065 ORTHO05D008960 2.8e-17 92.8 99 56.6
THA.LOC104819111 Tarenaya hassleriana HOM05D007065 ORTHO05D008960 2.8e-17 92.8 100 60.0
COL.COLO4_19334 Corchorus olitorius HOM05D002616 ORTHO05D003192 3.7e-17 92.4 109 56.0
SalBow5G3075 Salvia bowleyana HOM05D007065 ORTHO05D008960 3.7e-17 92.4 81 64.2
EL10Ac2g02888 Beta vulgaris HOM05D007065 ORTHO05D008960 4.8e-17 92.0 105 59.0
AUR62030541 Chenopodium quinoa HOM05D007065 ORTHO05D008960 4.8e-17 92.0 102 56.9
Peaxi162Scf01115g00011 Petunia axillaris HOM05D007065 ORTHO05D008960 4.8e-17 92.0 104 57.7
PGSC0003DMG400006766 Solanum tuberosum HOM05D007065 ORTHO05D008960 4.8e-17 92.0 103 55.3
Carub.0006s1163 Capsella rubella HOM05D007065 ORTHO05D008960 1.1e-16 90.9 85 64.7
Manes.04G064100 Manihot esculenta HOM05D007065 ORTHO05D008960 1.4e-16 90.5 115 53.9
Peaxi162Scf01115g00110 Petunia axillaris HOM05D007065 ORTHO05D008960 2.4e-16 89.7 104 56.7
Potri.003G203900 Populus trichocarpa HOM05D007065 ORTHO05D008960 3.1e-16 89.4 111 55.9
Lsat_1_v5_gn_1_99921 Lactuca sativa HOM05D007065 ORTHO05D008960 4.1e-16 89.0 85 57.6
Aa31LG11G7640 Aethionema arabicum HOM05D007065 ORTHO05D008960 9.0e-16 87.8 85 58.8
Thecc.10G002700 Theobroma cacao HOM05D007065 ORTHO05D008960 9.0e-16 87.8 112 53.6
SGA_v2.0_scaffold4G02459 Striga asiatica HOM05D007065 ORTHO05D008960 1.2e-15 87.4 88 60.2
A10p24790 Brassica napus HOM05D007065 ORTHO05D008960 1.5e-15 87.0 82 63.4
C09p63610 Brassica napus HOM05D007065 ORTHO05D008960 1.5e-15 87.0 82 63.4
BolC9t59205H Brassica oleracea HOM05D007065 ORTHO05D008960 1.5e-15 87.0 82 63.4
Haze_03101 Corylus avellana HOM05D007065 ORTHO05D008960 1.5e-15 87.0 85 67.1
BraA10t44543Z Brassica rapa HOM05D007065 ORTHO05D008960 3.4e-15 85.9 82 63.4
Migut.B01254 Erythranthe guttata HOM05D007065 ORTHO05D008960 4.5e-15 85.5 107 53.3
Sp6g30550 Schrenkiella parvula HOM05D007065 ORTHO05D008960 5.8e-15 85.1 82 63.4
Potri.001G020700 Populus trichocarpa HOM05D007065 ORTHO05D008960 7.6e-15 84.7 95 58.9
AT5G13470 Arabidopsis thaliana HOM05D007065 ORTHO05D008960 1.0e-14 84.3 120 48.3
HanXRQChr01g0020971 Helianthus annuus HOM05D007065 ORTHO05D008960 1.0e-14 84.3 103 48.5
Sabra01G0015300 Salix brachista HOM05D007065 ORTHO05D008960 1.0e-14 84.3 95 58.9
AL6G24090 Arabidopsis lyrata HOM05D007065 ORTHO05D008960 1.3e-14 84.0 83 60.2
ECA248G1453 Erigeron canadensis HOM05D007065 ORTHO05D008960 2.9e-14 82.8 103 51.5
Sed0022285 Sechium edule HOM05D007065 ORTHO05D008960 2.9e-14 82.8 103 55.3
Duzib128G1478 Durio zibethinus HOM05D007065 ORTHO05D008960 5.0e-14 82.0 103 55.3
Duzib114G0680 Durio zibethinus HOM05D007065 ORTHO05D008960 6.5e-14 81.6 92 56.5
unitig_22.g5430 Utricularia gibba HOM05D007065 ORTHO05D008960 8.4e-14 81.3 81 58.0
Thhalv10014938m.g Eutrema salsugineum HOM05D007065 ORTHO05D008960 4.2e-13 79.0 82 58.5
BcaNung01150 Brassica carinata HOM05D007065 ORTHO05D008960 2.7e-12 76.3 82 59.8
A02p01960 Brassica napus HOM05D007065 ORTHO05D008960 2.7e-12 76.3 82 59.8
CDE04G3117 Ceratophyllum demersum HOM05D007065 ORTHO05D008960 4.6e-12 75.5 99 49.5
DCAR_022363 Daucus carota HOM05D007065 ORTHO05D008960 6.1e-12 75.1 103 53.4
BcaNung01886 Brassica carinata HOM05D007065 ORTHO05D002715 1.0e-11 74.3 82 58.5
FAN28G1096 Fragaria x ananassa HOM05D007065 ORTHO05D008960 1.0e-11 74.3 63 69.8
C02p06180 Brassica napus HOM05D007065 ORTHO05D008960 2.3e-11 73.2 82 58.5
BolC2t06559H Brassica oleracea HOM05D007065 ORTHO05D008960 2.3e-11 73.2 82 58.5
BraA02t05169Z Brassica rapa HOM05D007065 ORTHO05D008960 2.3e-11 73.2 82 57.3
TAR622G0888 Trochodendron aralioides HOM05D007065 ORTHO05D008960 2.3e-11 73.2 54 75.9
CDE07G0125 Ceratophyllum demersum HOM05D007065 ORTHO05D008960 1.9e-10 70.1 98 48.0
HPP92_001654 Vanilla planifolia HOM05D007065 ORTHO05D008960 1.3e-09 67.4 98 44.9
Thecc.03G067800 Theobroma cacao HOM05D007065 ORTHO05D008960 1.6e-09 67.0 71 53.5
Gohir.D13G013700 Gossypium hirsutum HOM05D007065 ORTHO05D008960 2.8e-09 66.2 83 55.4
TWI09G1481 Tripterygium wilfordii HOM05D007065 ORTHO05D008960 4.1e-08 62.4 100 44.0
Gohir.A13G012500 Gossypium hirsutum HOM05D007065 ORTHO05D008960 9.0e-08 61.2 89 48.3
Gorai.013G014700 Gossypium raimondii HOM05D007065 ORTHO05D008960 9.0e-08 61.2 89 50.6
CANSAT80G2361 Cannabis sativa HOM05D007065 ORTHO05D008960 3.8e-06 55.8 44 65.9


User provided reference genes

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