Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1631 Trochodendron aralioides HOM05D004395 ORTHO05D005234 3.3e-56 221.5 112 100.0
TAR633G1754 Trochodendron aralioides HOM05D004395 ORTHO05D005234 3.7e-23 111.7 71 81.7
TAR633G1975 Trochodendron aralioides HOM05D004395 ORTHO05D005234 3.7e-23 111.7 71 81.7
TAR365G0011 Trochodendron aralioides HOM05D004395 ORTHO05D005234 4.1e-22 108.2 71 78.9
Aqoxy2G02790 Aquilegia oxysepala HOM05D004395 ORTHO05D005234 4.5e-21 104.8 71 74.6
Nn3g21647 Nelumbo nucifera HOM05D004395 ORTHO05D005234 5.9e-21 104.4 71 77.5
MBI18_g28456_MAGBIO Magnolia biondii HOM05D004395 ORTHO05D005234 2.5e-19 99.0 71 70.4
TAR374G1485 Trochodendron aralioides HOM05D004395 ORTHO05D005234 9.4e-19 97.1 70 75.7
GSVIVG01028100001 Vitis vinifera HOM05D004395 ORTHO05D005234 1.6e-18 96.3 71 67.6
Ciclev10022218m.g Citrus clementina HOM05D004395 ORTHO05D005234 3.6e-18 95.1 71 71.8
Cpa.g.sc18.22 Carica papaya HOM05D004395 ORTHO05D005234 4.7e-18 94.7 71 69.0
Duzib138G1253 Durio zibethinus HOM05D004395 ORTHO05D005234 8.0e-18 94.0 71 70.4
Gohir.D11G115400 Gossypium hirsutum HOM05D004395 ORTHO05D005234 1.0e-17 93.6 71 70.4
Gohir.A11G110300 Gossypium hirsutum HOM05D004395 ORTHO05D005234 1.4e-17 93.2 71 69.0
Gorai.007G123500 Gossypium raimondii HOM05D004395 ORTHO05D005234 1.4e-17 93.2 71 69.0
SalBow3G3242 Salvia bowleyana HOM05D004395 ORTHO05D005234 1.4e-17 93.2 71 69.0
Thecc.01G311200 Theobroma cacao HOM05D004395 ORTHO05D005234 3.0e-17 92.0 71 67.6
Atru.chr5.1037 Acer truncatum HOM05D004395 ORTHO05D005234 4.0e-17 91.7 71 67.6
CDE02G0047 Ceratophyllum demersum HOM05D004395 ORTHO05D005234 4.0e-17 91.7 71 67.6
ClCG09G005210 Citrullus lanatus HOM05D004395 ORTHO05D005234 5.2e-17 91.3 71 67.6
Nitab4.5_0001301g0120 Nicotiana tabacum HOM05D004395 ORTHO05D005234 5.2e-17 91.3 71 70.4
CAN.G362.41 Capsicum annuum HOM05D004395 ORTHO05D005234 6.7e-17 90.9 71 67.6
Oeu047386.1 Olea europaea HOM05D004395 ORTHO05D005234 6.7e-17 90.9 71 64.8
PSO210G6304 Papaver somniferum HOM05D004395 ORTHO05D005234 8.8e-17 90.5 72 70.8
Sopen01g031370 Solanum pennellii HOM05D004395 ORTHO05D005234 8.8e-17 90.5 71 67.6
SGA_v2.0_scaffold334G49058 Striga asiatica HOM05D004395 ORTHO05D005234 8.8e-17 90.5 71 67.6
Carub.0005s2924 Capsella rubella HOM05D004395 ORTHO05D005234 1.2e-16 90.1 71 64.8
MELO3C015935.2 Cucumis melo HOM05D004395 ORTHO05D005234 1.2e-16 90.1 71 66.2
CsaV3_7G029860 Cucumis sativus L. HOM05D004395 ORTHO05D005234 1.2e-16 90.1 71 66.2
PSO761G0048 Papaver somniferum HOM05D004395 ORTHO05D005234 2.0e-16 89.4 72 70.8
Solyc01g079590.3 Solanum lycopersicum HOM05D004395 ORTHO05D005234 2.0e-16 89.4 71 66.2
PGSC0003DMG400009034 Solanum tuberosum HOM05D004395 ORTHO05D005234 2.0e-16 89.4 71 66.2
TWI18G0814 Tripterygium wilfordii HOM05D004395 ORTHO05D005234 2.0e-16 89.4 71 67.6
AL5G45330 Arabidopsis lyrata HOM05D004395 ORTHO05D005234 2.6e-16 89.0 71 64.8
Gorai.004G143800 Gossypium raimondii HOM05D004395 ORTHO05D005234 3.3e-16 88.6 71 63.4
Prupe.8G270400 Prunus persica HOM05D004395 ORTHO05D005234 3.3e-16 88.6 71 67.6
THA.LOC104800347 Tarenaya hassleriana HOM05D004395 ORTHO05D005234 3.3e-16 88.6 71 64.8
THA.LOC104827672 Tarenaya hassleriana HOM05D004395 ORTHO05D005234 3.3e-16 88.6 71 64.8
Aa31LG10G16400 Aethionema arabicum HOM05D004395 ORTHO05D005234 4.4e-16 88.2 71 64.8
MSTRG.21675 Avicennia marina HOM05D004395 ORTHO05D005234 5.7e-16 87.8 71 66.2
CARHR172840 Cardamine hirsuta HOM05D004395 ORTHO05D005234 5.7e-16 87.8 71 64.8
Dinv10080 Davidia involucrata HOM05D004395 ORTHO05D005234 5.7e-16 87.8 71 63.4
Dinv33105 Davidia involucrata HOM05D004395 ORTHO05D005234 5.7e-16 87.8 71 66.2
MD03G1296800 Malus domestica HOM05D004395 ORTHO05D005234 5.7e-16 87.8 71 67.6
MD11G1316400 Malus domestica HOM05D004395 ORTHO05D005234 5.7e-16 87.8 71 67.6
RcHm_v2.0_Chr7g0241771 Rosa chinensis HOM05D004395 ORTHO05D005234 5.7e-16 87.8 71 66.2
Sp5g00920 Schrenkiella parvula HOM05D004395 ORTHO05D005234 5.7e-16 87.8 71 64.8
THA.LOC104817465 Tarenaya hassleriana HOM05D004395 ORTHO05D005234 5.7e-16 87.8 73 64.4
Cfa005822 Carpinus fangiana HOM05D004395 ORTHO05D005234 7.5e-16 87.4 71 63.4
Nitab4.5_0000906g0030 Nicotiana tabacum HOM05D004395 ORTHO05D005234 7.5e-16 87.4 71 67.6
COL.COLO4_23252 Corchorus olitorius HOM05D004395 ORTHO05D005234 9.7e-16 87.0 71 67.6
Migut.D00093 Erythranthe guttata HOM05D004395 ORTHO05D005234 9.7e-16 87.0 71 64.8
Eucgr.K03533 Eucalyptus grandis HOM05D004395 ORTHO05D005234 9.7e-16 87.0 69 63.8
Thhalv10006236m.g Eutrema salsugineum HOM05D004395 ORTHO05D005234 9.7e-16 87.0 71 64.8
Hund09618 Selenicereus undatus HOM05D004395 ORTHO05D005234 9.7e-16 87.0 71 64.8
AT3G62580 Arabidopsis thaliana HOM05D004395 ORTHO05D005234 1.3e-15 86.7 71 63.4
FAN08G2141 Fragaria x ananassa HOM05D004395 ORTHO05D005234 1.3e-15 86.7 71 64.8
Gohir.A08G119000 Gossypium hirsutum HOM05D004395 ORTHO05D005234 1.3e-15 86.7 71 62.0
PGR044G2039 Punica granatum HOM05D004395 ORTHO05D005234 1.3e-15 86.7 71 62.0
Sed0020172 Sechium edule HOM05D004395 ORTHO05D005234 1.7e-15 86.3 71 62.0
TWI75G0438 Tripterygium wilfordii HOM05D004395 ORTHO05D005234 1.7e-15 86.3 71 64.8
CDE09G1198 Ceratophyllum demersum HOM05D004395 ORTHO05D005234 2.2e-15 85.9 71 64.8
BcaC07g42768 Brassica carinata HOM05D004395 ORTHO05D005234 2.8e-15 85.5 71 62.0
A09p54450 Brassica napus HOM05D004395 ORTHO05D005234 2.8e-15 85.5 71 62.0
BraA09t40858Z Brassica rapa HOM05D004395 ORTHO05D005234 2.8e-15 85.5 71 62.0
BcaC07g40733 Brassica carinata HOM05D004395 ORTHO05D005234 3.7e-15 85.1 71 62.0
C08p37340 Brassica napus HOM05D004395 ORTHO05D005234 3.7e-15 85.1 71 62.0
BolC8t51312H Brassica oleracea HOM05D004395 ORTHO05D005234 3.7e-15 85.1 71 62.0
ECA236G4761 Erigeron canadensis HOM05D004395 ORTHO05D005234 3.7e-15 85.1 71 63.4
Lsat_1_v5_gn_8_166540 Lactuca sativa HOM05D004395 ORTHO05D005234 3.7e-15 85.1 71 64.8
CANSAT25G2014 Cannabis sativa HOM05D004395 ORTHO05D005234 4.8e-15 84.7 71 59.2
CiPaw.07G115900 Carya illinoinensis HOM05D004395 ORTHO05D005234 4.8e-15 84.7 71 62.0
QL01p046128 Quercus lobata HOM05D004395 ORTHO05D005234 4.8e-15 84.7 72 63.9
FvH4_5g39460 Fragaria vesca HOM05D004395 ORTHO05D005234 1.1e-14 83.6 71 63.4
Peaxi162Scf00001g10221 Petunia axillaris HOM05D004395 ORTHO05D005234 1.1e-14 83.6 72 65.3
Actinidia21008 Actinidia chinensis HOM05D004395 ORTHO05D005234 1.4e-14 83.2 71 62.0
Dinv33106 Davidia involucrata HOM05D004395 ORTHO05D005234 1.4e-14 83.2 71 63.4
DCAR_002879 Daucus carota HOM05D004395 ORTHO05D005234 1.8e-14 82.8 71 64.8
HanXRQChr06g0167821 Helianthus annuus HOM05D004395 ORTHO05D005234 1.8e-14 82.8 71 62.0
vmacro15119 Vaccinium macrocarpon HOM05D004395 ORTHO05D005234 1.8e-14 82.8 71 66.2
unitig_0.g274 Utricularia gibba HOM05D004395 ORTHO05D005234 3.1e-14 82.0 71 60.6
FAN13G1316 Fragaria x ananassa HOM05D004395 ORTHO05D005234 7.0e-14 80.9 71 64.8
Cc01_g21280 Coffea canephora HOM05D004395 ORTHO05D005234 9.1e-14 80.5 75 61.3
arahy.Tifrunner.gnm1.ann1.NCI439 Arachis hypogaea HOM05D004395 ORTHO05D005234 1.2e-13 80.1 71 62.0
arahy.Tifrunner.gnm1.ann1.TUT6I7 Arachis hypogaea HOM05D004395 ORTHO05D005234 1.2e-13 80.1 71 62.0
CSS0011400 Camellia sinensis var. sinensis HOM05D004395 ORTHO05D005234 1.6e-13 79.7 71 62.0
CSS0015284 Camellia sinensis var. sinensis HOM05D004395 ORTHO05D005234 1.6e-13 79.7 71 62.0
FAN18G1082 Fragaria x ananassa HOM05D004395 ORTHO05D005234 1.6e-13 79.7 71 63.4
Oeu004074.1 Olea europaea HOM05D004395 ORTHO05D005234 1.6e-13 79.7 71 62.0
Glyma.10G014200 Glycine max HOM05D004395 ORTHO05D005234 2.0e-13 79.3 71 62.0
Potri.002G197800 Populus trichocarpa HOM05D004395 ORTHO05D005234 2.0e-13 79.3 71 62.0
unitig_60.g25658 Utricularia gibba HOM05D004395 ORTHO05D005234 2.0e-13 79.3 71 59.2
VMungo0720G1854 Vigna mungo HOM05D004395 ORTHO05D005234 2.0e-13 79.3 71 62.0
Actinidia25840 Actinidia chinensis HOM05D004395 ORTHO05D005234 3.5e-13 78.6 72 61.1
ATR0706G165 Amborella trichopoda HOM05D004395 ORTHO05D005234 4.5e-13 78.2 71 62.0
Eucgr.K03534 Eucalyptus grandis HOM05D004395 ORTHO05D005234 4.5e-13 78.2 71 56.3
FAN04G0288 Fragaria x ananassa HOM05D004395 ORTHO05D005234 4.5e-13 78.2 71 63.4
Lj5g0013155 Lotus japonicus HOM05D004395 ORTHO05D005234 5.9e-13 77.8 71 62.0
Lalb_Chr02g0146721 Lupinus albus HOM05D004395 ORTHO05D005234 5.9e-13 77.8 71 60.6
Lalb_Chr21g0309501 Lupinus albus HOM05D004395 ORTHO05D005234 5.9e-13 77.8 71 60.6
Ah.02g112150 Amaranthus hybridus HOM05D004395 ORTHO05D005234 7.7e-13 77.4 71 60.6
Manes.05G002300 Manihot esculenta HOM05D004395 ORTHO05D005234 7.7e-13 77.4 71 60.6
Rhsim01G0289900 Rhododendron simsii HOM05D004395 ORTHO05D005234 7.7e-13 77.4 73 60.3
Lj2A1204T57 Lonicera japonica HOM05D004395 ORTHO05D005234 1.3e-12 76.6 72 62.5
Phvul.007G215400 Phaseolus vulgaris HOM05D004395 ORTHO05D005234 1.3e-12 76.6 71 60.6
SEGI_05878 Sequoiadendron giganteum HOM05D004395 ORTHO05D005234 1.3e-12 76.6 79 55.7
Manes.01G226500 Manihot esculenta HOM05D004395 ORTHO05D005234 2.2e-12 75.9 71 59.2
EL10As5g23506 Beta vulgaris HOM05D004395 ORTHO05D005234 2.9e-12 75.5 68 60.3
MBI18_g28451_MAGBIO Magnolia biondii HOM05D004395 ORTHO05D005234 2.9e-12 75.5 68 52.9
Sabra02G0159800 Salix brachista HOM05D004395 ORTHO05D005234 2.9e-12 75.5 71 60.6
MD16G1277100 Malus domestica HOM05D003738 ORTHO05D005234 3.8e-12 75.1 61 65.6
AUR62011832 Chenopodium quinoa HOM05D004395 ORTHO05D005234 8.5e-12 73.9 71 59.2
AUR62024674 Chenopodium quinoa HOM05D004395 ORTHO05D005234 8.5e-12 73.9 71 59.2
Psat6g162440 Pisum sativum HOM05D004395 ORTHO05D005234 8.5e-12 73.9 70 65.7
Medtr1g087320 Medicago truncatula HOM05D004395 ORTHO05D005234 1.1e-11 73.6 71 60.6
Sc05g0000520 Simmondsia chinensis HOM05D004395 ORTHO05D005234 1.5e-11 73.2 68 58.8
Zm00001eb137060 Zea mays HOM05D004395 ORTHO05D005234 1.5e-11 73.2 71 56.3
Ca_10293_v3 Cicer arietinum L. HOM05D004395 ORTHO05D005234 1.9e-11 72.8 71 59.2
Ca_30262_v3 Cicer arietinum L. HOM05D004395 ORTHO05D005234 1.9e-11 72.8 71 59.2
Sc17g0000530 Simmondsia chinensis HOM05D004395 ORTHO05D005234 3.2e-11 72.0 71 59.2
Oeu008460.1 Olea europaea HOM05D004395 ORTHO05D005234 4.2e-11 71.6 71 56.3
TPR.G19763 Trifolium pratense HOM05D004395 ORTHO05D005234 2.1e-10 69.3 62 62.9
Zm00001eb028370 Zea mays HOM05D004395 ORTHO05D005234 3.6e-10 68.6 72 55.6
HPP92_017241 Vanilla planifolia HOM05D004395 ORTHO05D005234 1.0e-09 67.0 72 54.2
Cfa005821 Carpinus fangiana HOM05D004395 ORTHO05D005234 1.4e-09 66.6 62 53.2
Os12g0557400 Oryza sativa ssp. japonica HOM05D004395 ORTHO05D005234 1.8e-09 66.2 72 50.0
Haze_05020 Corylus avellana HOM05D004395 ORTHO05D005234 4.0e-09 65.1 62 53.2
Haze_05023 Corylus avellana HOM05D004395 ORTHO05D005234 4.0e-09 65.1 62 53.2
Eucgr.K03536 Eucalyptus grandis HOM05D004395 ORTHO05D005234 4.0e-09 65.1 68 52.9
Os11g0673100 Oryza sativa ssp. japonica HOM05D004395 ORTHO05D005234 6.8e-09 64.3 73 49.3
Haze_05024 Corylus avellana HOM05D004395 ORTHO05D005234 5.7e-08 61.2 58 51.7
AagrBONN_evm.TU.Sc2ySwM_344.4364 Anthoceros agrestis HOM05D004395 ORTHO05D005234 7.5e-08 60.8 80 46.2
Cfa005819 Carpinus fangiana HOM05D004395 ORTHO05D005234 8.3e-07 57.4 52 51.9
RcHm_v2.0_Chr7g0189431 Rosa chinensis HOM05D004395 ORTHO05D005234 8.3e-07 57.4 68 51.5
SMO367G0059 Selaginella moellendorffii HOM05D004395 ORTHO05D005234 2.4e-06 55.8 74 43.2
Nn8g41243 Nelumbo nucifera HOM05D004395 ORTHO05D005234 3.1e-06 55.5 43 65.1
MD04G1089900 Malus domestica HOM05D004395 ORTHO05D005234 9.1e-06 53.9 32 84.4


User provided reference genes

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