Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1621 Trochodendron aralioides HOM05D005826 ORTHO05D004357 5.8e-187 657.5 360 100.0
VMungo1383G1915 Vigna mungo HOM05D005826 ORTHO05D004357 6.8e-103 378.3 305 67.9
GSVIVG01031331001 Vitis vinifera HOM05D005826 ORTHO05D004357 1.2e-102 377.5 315 69.5
SEGI_10560 Sequoiadendron giganteum HOM05D005826 ORTHO05D004357 6.4e-101 371.7 300 67.7
COL.COLO4_05485 Corchorus olitorius HOM05D005826 ORTHO05D004357 1.4e-100 370.5 303 71.6
Nn3g21953 Nelumbo nucifera HOM05D005826 ORTHO05D004357 4.1e-100 369.0 300 69.0
AUR62006820 Chenopodium quinoa HOM05D005826 ORTHO05D004357 7.8e-99 364.8 299 65.2
PGR083G1613 Punica granatum HOM05D005826 ORTHO05D004357 3.3e-97 359.4 300 68.7
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 9.5e-97 357.8 303 66.7
Phvul.001G222000 Phaseolus vulgaris HOM05D005826 ORTHO05D004357 1.2e-96 357.5 305 65.6
Migut.N00974 Erythranthe guttata HOM05D005826 ORTHO05D004357 2.1e-96 356.7 305 65.9
FAN09G2233 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.1e-96 356.7 306 69.9
Thecc.05G329600 Theobroma cacao HOM05D005826 ORTHO05D004357 3.6e-96 355.9 301 68.4
Manes.08G107500 Manihot esculenta HOM05D005826 ORTHO05D004357 6.2e-96 355.1 300 68.7
Atru.chr12.1539 Acer truncatum HOM05D005826 ORTHO05D004357 5.2e-95 352.1 303 66.0
Nn4g25335 Nelumbo nucifera HOM05D005826 ORTHO05D004357 5.2e-95 352.1 310 67.1
arahy.Tifrunner.gnm1.ann1.CWLZ7L Arachis hypogaea HOM05D005826 ORTHO05D004357 2.6e-94 349.7 317 63.1
TPR.G1630 Trifolium pratense HOM05D005826 ORTHO05D004357 1.3e-93 347.4 310 62.6
MD12G1199800 Malus domestica HOM05D005826 ORTHO05D004357 2.2e-93 346.7 300 65.0
HPP92_006322 Vanilla planifolia HOM05D005826 ORTHO05D004357 2.2e-93 346.7 304 65.1
Psat3g015120 Pisum sativum HOM05D005826 ORTHO05D004357 2.9e-93 346.3 307 63.2
CiPaw.07G036400 Carya illinoinensis HOM05D005826 ORTHO05D004357 3.7e-93 345.9 301 65.4
SGA_v2.0_scaffold22G09707 Striga asiatica HOM05D005826 ORTHO05D004357 4.9e-93 345.5 302 64.2
HPP92_027884 Vanilla planifolia HOM05D005826 ORTHO05D004357 8.3e-93 344.7 304 65.1
Hund21832 Selenicereus undatus HOM05D005826 ORTHO05D004357 1.1e-92 344.4 316 62.0
Dinv30950 Davidia involucrata HOM05D005826 ORTHO05D004357 1.4e-92 344.0 301 66.1
Cfa006771 Carpinus fangiana HOM05D005826 ORTHO05D004357 9.2e-92 341.3 299 63.9
Lalb_Chr18g0046231 Lupinus albus HOM05D005826 ORTHO05D004357 1.6e-91 340.5 305 63.0
Ciclev10012662m.g Citrus clementina HOM05D005826 ORTHO05D004357 3.5e-91 339.3 310 63.5
Ca_09273_v3 Cicer arietinum L. HOM05D005826 ORTHO05D004357 7.8e-91 338.2 310 62.9
CANSAT54G1651 Cannabis sativa HOM05D005826 ORTHO05D004357 3.0e-90 336.3 305 64.3
Sopen01g044700 Solanum pennellii HOM05D005826 ORTHO05D004357 3.0e-90 336.3 302 61.3
FAN14G1262 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.1e-89 334.3 314 66.2
arahy.Tifrunner.gnm1.ann1.TKMT5T Arachis hypogaea HOM05D005826 ORTHO05D004357 1.5e-89 334.0 317 60.9
AUR62000478 Chenopodium quinoa HOM05D005826 ORTHO05D004357 1.5e-89 334.0 268 66.8
Solyc01g101250.3 Solanum lycopersicum HOM05D005826 ORTHO05D004357 1.5e-89 334.0 302 60.9
Eucgr.B01823 Eucalyptus grandis HOM05D005826 ORTHO05D004357 3.3e-89 332.8 300 66.0
FvH4_6g08510 Fragaria vesca HOM05D005826 ORTHO05D004357 9.5e-89 331.3 306 66.7
Lj1g0011738 Lotus japonicus HOM05D005826 ORTHO05D004357 1.2e-88 330.9 307 60.6
Glyma.03G228100 Glycine max HOM05D005826 ORTHO05D004357 1.6e-88 330.5 305 60.3
EL10Ac4g09561 Beta vulgaris HOM05D005826 ORTHO05D004357 2.8e-88 329.7 291 62.9
Hma1.2p1_0052F.1_g030400 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 3.6e-88 329.3 275 66.5
Sed0027683 Sechium edule HOM05D005826 ORTHO05D004357 4.7e-88 328.9 304 62.2
Hund07271 Selenicereus undatus HOM05D005826 ORTHO05D004357 4.7e-88 328.9 302 61.6
Mapoly0026s0010 Marchantia polymorpha HOM05D005826 ORTHO05D004357 6.2e-88 328.6 285 66.3
unitig_26.g9561 Utricularia gibba HOM05D005826 ORTHO05D005018 8.1e-88 328.2 304 64.1
TWI12G0016 Tripterygium wilfordii HOM05D005826 ORTHO05D004357 2.3e-87 326.6 298 64.4
Actinidia17738 Actinidia chinensis HOM05D005826 ORTHO05D004357 8.9e-87 324.7 308 62.0
Aqoxy2G02470 Aquilegia oxysepala HOM05D005826 ORTHO05D004357 8.9e-87 324.7 301 63.5
CsaV3_1G038040 Cucumis sativus L. HOM05D005826 ORTHO05D004357 1.2e-86 324.3 304 59.9
ATR0796G273 Amborella trichopoda HOM05D005826 ORTHO05D004357 2.6e-86 323.2 294 66.7
Glyma.19G225400 Glycine max HOM05D005826 ORTHO05D004357 3.4e-86 322.8 305 60.0
Cpa.g.sc48.51 Carica papaya HOM05D005826 ORTHO05D004357 1.1e-84 317.8 303 60.1
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 2.7e-83 313.2 301 60.8
Sc09g0002410 Simmondsia chinensis HOM05D005826 ORTHO05D004357 3.5e-83 312.8 302 62.3
CAN.G1248.16 Capsicum annuum HOM05D005826 ORTHO05D004357 1.5e-81 307.4 316 56.3
Haze_03986 Corylus avellana HOM05D005826 ORTHO05D004357 3.3e-81 306.2 248 67.3
Rhsim11G0105000 Rhododendron simsii HOM05D005826 ORTHO05D004357 3.3e-81 306.2 281 64.1
vmacro01667 Vaccinium macrocarpon HOM05D005826 ORTHO05D004357 8.9e-79 298.1 343 54.2
Medtr7g111520 Medicago truncatula HOM05D005826 ORTHO05D004357 1.2e-78 297.7 313 57.5
THA.LOC104821749 Tarenaya hassleriana HOM05D005826 ORTHO05D004357 9.9e-78 294.7 301 55.8
FAN02G3127 Fragaria x ananassa HOM05D005826 ORTHO05D004357 2.2e-77 293.5 302 61.6
Pp3c20_6860 Physcomitrium patens HOM05D005826 ORTHO05D004357 2.9e-77 293.1 287 58.9
Hma1.2p1_0052F.1_g030390 Hydrangea macrophylla HOM05D005826 ORTHO05D004357 8.4e-77 291.6 200 75.5
MSTRG.27910 Avicennia marina HOM05D005826 ORTHO05D004357 7.1e-76 288.5 301 58.8
RcHm_v2.0_Chr3g0458551 Rosa chinensis HOM05D005826 ORTHO05D004357 1.6e-75 287.3 308 61.4
Lsat_1_v5_gn_7_64900 Lactuca sativa HOM05D005826 ORTHO05D004357 2.3e-74 283.5 322 54.7
Dinv24515 Davidia involucrata HOM05D005826 ORTHO05D004357 8.7e-74 281.6 317 57.7
ClCG03G017880 Citrullus lanatus HOM05D005826 ORTHO05D004357 1.5e-73 280.8 342 53.2
Sabra13G0001500 Salix brachista HOM05D005826 ORTHO05D004357 1.5e-73 280.8 341 54.0
Potri.005G002700 Populus trichocarpa HOM05D005826 ORTHO05D004357 2.4e-71 273.5 300 59.3
DCAR_006590 Daucus carota HOM05D005826 ORTHO05D004357 4.0e-71 272.7 195 71.3
Cc02_g35870 Coffea canephora HOM05D005826 ORTHO05D004357 5.8e-70 268.9 301 56.8
Carub.0006s2438 Capsella rubella HOM05D005826 ORTHO05D004357 1.3e-69 267.7 304 53.0
Prupe.6G304400 Prunus persica HOM05D005826 ORTHO05D004357 3.8e-69 266.2 302 58.6
FAN05G0435 Fragaria x ananassa HOM05D005826 ORTHO05D004357 1.9e-68 263.8 306 58.2
AT5G26610 Arabidopsis thaliana HOM05D005826 ORTHO05D004357 7.1e-68 261.9 304 51.0
QL03p011008 Quercus lobata HOM05D005826 ORTHO05D004357 7.1e-68 261.9 294 57.8
AL6G38590 Arabidopsis lyrata HOM05D005826 ORTHO05D004357 9.3e-68 261.5 332 48.8
CSS0045001 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 9.3e-68 261.5 301 57.8
MBI12_g27791_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 9.3e-68 261.5 190 70.5
CSS0017545 Camellia sinensis var. sinensis HOM05D005826 ORTHO05D004357 3.5e-67 259.6 301 57.5
PSO210G7107 Papaver somniferum HOM05D005826 ORTHO05D004357 4.6e-67 259.2 310 58.1
Thhalv10004695m.g Eutrema salsugineum HOM05D005826 ORTHO05D004357 7.9e-67 258.5 303 51.2
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 8.7e-66 255.0 271 57.6
A09p05710 Brassica napus HOM05D005826 ORTHO05D004357 2.1e-64 250.4 305 49.5
BraA09t36211Z Brassica rapa HOM05D005826 ORTHO05D004357 2.1e-64 250.4 305 49.5
Peaxi162Scf00194g00018 Petunia axillaris HOM05D005826 ORTHO05D004357 2.1e-64 250.4 304 53.6
Ah.06g190730 Amaranthus hybridus HOM05D005826 ORTHO05D004357 2.8e-64 250.0 301 52.5
Sabra05G0000100 Salix brachista HOM05D005826 ORTHO05D004357 4.8e-64 249.2 303 55.4
Sabra05G0014200 Salix brachista HOM05D005826 ORTHO05D004357 4.8e-64 249.2 303 55.4
Gorai.013G210000 Gossypium raimondii HOM05D005826 ORTHO05D004357 2.4e-63 246.9 311 53.7
Gohir.D13G184300 Gossypium hirsutum HOM05D005826 ORTHO05D004357 4.0e-63 246.1 313 53.4
Rhsim11G0104700 Rhododendron simsii HOM05D005826 ORTHO05D004357 4.0e-63 246.1 296 55.1
Nitab4.5_0002516g0020 Nicotiana tabacum HOM05D005826 ORTHO05D004357 5.3e-63 245.7 332 49.1
SMO196G0190 Selaginella moellendorffii HOM05D005826 ORTHO05D004357 1.7e-61 240.7 273 54.9
Nitab4.5_0005662g0030 Nicotiana tabacum HOM05D005826 ORTHO05D004357 4.9e-61 239.2 304 50.0
PSO761G0619 Papaver somniferum HOM05D005826 ORTHO05D004357 8.4e-61 238.4 310 54.5
BcaC04g23633 Brassica carinata HOM05D005826 ORTHO05D004357 1.6e-59 234.2 339 45.4
C09p06300 Brassica napus HOM05D005826 ORTHO05D004357 1.6e-59 234.2 339 45.4
BolC9t53550H Brassica oleracea HOM05D005826 ORTHO05D004357 4.6e-59 232.6 305 48.2
HanXRQChr09g0247941 Helianthus annuus HOM05D005826 ORTHO05D004357 3.0e-58 229.9 307 53.1
CDE01G0499 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 6.7e-58 228.8 295 54.9
MBI09_g02136_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 4.8e-56 222.6 193 64.2
ECA240G4745 Erigeron canadensis HOM05D005826 ORTHO05D004357 1.4e-55 221.1 317 49.2
Sp2g21260 Schrenkiella parvula HOM05D005826 ORTHO05D004357 2.4e-55 220.3 302 49.3
BcaB04g19716 Brassica carinata HOM05D005826 ORTHO05D004357 1.1e-52 211.5 304 46.7
Gohir.A13G177700 Gossypium hirsutum HOM05D005826 ORTHO05D004357 1.1e-52 211.5 305 49.8
Aa31LG11G9920 Aethionema arabicum HOM05D005826 ORTHO05D004357 3.2e-52 209.9 286 49.3
CARHR186850 Cardamine hirsuta HOM05D005826 ORTHO05D004357 1.5e-49 201.1 273 50.5
CBR_g48434 Chara braunii HOM05D005826 ORTHO05D004357 1.6e-48 197.6 148 69.6
MBI06_g28828_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 9.0e-47 191.8 158 70.3
AagrBONN_evm.TU.Sc2ySwM_362.2503 Anthoceros agrestis HOM05D005826 ORTHO05D004357 1.5e-41 174.5 137 67.2
BcaNung03909 Brassica carinata HOM05D005826 ORTHO05D004357 4.3e-41 172.9 210 49.5
Os04g0115400 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 9.0e-39 165.2 116 69.8
MBI12_g47801_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 9.4e-36 155.2 182 51.1
Potri.013G002100 Populus trichocarpa HOM05D005826 ORTHO05D004357 1.1e-31 141.7 161 58.4
MELO3C015241.2 Cucumis melo HOM05D005826 ORTHO05D004357 3.8e-29 133.3 105 62.9
PGR083G0870 Punica granatum HOM05D005826 ORTHO05D004357 2.5e-28 130.6 133 66.2
Cre03.g201250 Chlamydomonas reinhardtii HOM05D005826 ORTHO05D004357 6.1e-27 125.9 233 43.8
PGSC0003DMG400018243 Solanum tuberosum HOM05D005826 ORTHO05D004357 6.3e-24 115.9 129 56.6
MELO3C021663.2 Cucumis melo HOM05D005826 ORTHO05D004357 7.7e-22 109.0 66 75.8
BraA06t26622Z Brassica rapa HOM05D005826 ORTHO05D004357 1.9e-20 104.4 90 66.7
C07p41530 Brassica napus HOM05D005826 ORTHO05D004357 6.3e-16 89.4 97 51.5
BolC7t44686H Brassica oleracea HOM05D005826 ORTHO05D004357 6.3e-16 89.4 97 51.5
Migut.O00760 Erythranthe guttata HOM05D005826 ORTHO05D004357 8.2e-16 89.0 112 56.2
BcaNung03680 Brassica carinata HOM05D005826 ORTHO05D004357 1.4e-15 88.2 95 51.6
A06p36960 Brassica napus HOM05D005826 ORTHO05D004357 3.5e-14 83.6 64 68.8
Os05g0229475 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 3.5e-14 83.6 48 79.2
MBI18_g10370_MAGBIO Magnolia biondii HOM05D005826 ORTHO05D004357 2.1e-11 74.3 93 60.2
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 1.7e-08 64.7 108 39.8
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 6.3e-08 62.8 108 39.8
Oeu023421.1 Olea europaea HOM05D005826 ORTHO05D004357 8.3e-08 62.4 57 63.2
CDE12G0861 Ceratophyllum demersum HOM05D005826 ORTHO05D004357 3.1e-07 60.5 29 89.7
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 3.1e-07 60.5 108 38.9
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 5.4e-07 59.7 114 37.7
Thhalv10002245m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 1.6e-06 58.2 116 31.9
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 1.6e-06 58.2 60 50.0
PSO063G2822 Papaver somniferum HOM05D006753 ORTHO05D008521 1.6e-06 58.2 50 56.0
PSO782G2482 Papaver somniferum HOM05D006753 ORTHO05D008521 1.6e-06 58.2 50 56.0
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 2.0e-06 57.8 108 30.6
Os04g0114801 Oryza sativa ssp. japonica HOM05D005826 ORTHO05D004357 2.0e-06 57.8 59 50.8
ECA247G0541 Erigeron canadensis HOM05D002899 ORTHO05D003850 2.7e-06 57.4 99 33.3
Glyma.10G288900 Glycine max HOM05D006753 ORTHO05D008521 2.7e-06 57.4 105 33.3
SEGI_21581 Sequoiadendron giganteum HOM05D005384 ORTHO05D006477 3.5e-06 57.0 66 42.4
SGA_v2.0_scaffold119G32769 Striga asiatica HOM05D006753 ORTHO05D008521 3.5e-06 57.0 51 54.9
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 3.5e-06 57.0 95 34.7
arahy.Tifrunner.gnm1.ann1.RGG8YR Arachis hypogaea HOM05D006753 ORTHO05D008521 5.9e-06 56.2 56 48.2
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 5.9e-06 56.2 121 33.1
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 5.9e-06 56.2 66 43.9
arahy.Tifrunner.gnm1.ann1.IW7U68 Arachis hypogaea HOM05D006753 ORTHO05D008521 7.7e-06 55.8 56 48.2
Dinv04696 Davidia involucrata HOM05D002899 ORTHO05D003850 7.7e-06 55.8 115 35.7
Nn3g18540 Nelumbo nucifera HOM05D006753 ORTHO05D008521 7.7e-06 55.8 103 35.9


User provided reference genes

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