Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1611 Trochodendron aralioides HOM05D003803 ORTHO05D004456 7.2e-69 264.2 182 100.0
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 4.8e-20 102.1 156 47.4
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 6.7e-14 81.6 50 88.0
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 1.9e-13 80.1 49 83.7
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 2.5e-13 79.7 50 86.0
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 2.5e-13 79.7 203 35.5
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 3.3e-13 79.3 49 87.8
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 5.6e-13 78.6 49 85.7
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 5.6e-13 78.6 48 83.3
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 7.4e-13 78.2 49 81.6
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 9.6e-13 77.8 49 81.6
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 9.6e-13 77.8 49 81.6
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 1.3e-12 77.4 49 81.6
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 1.3e-12 77.4 49 81.6
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 1.6e-12 77.0 214 34.1
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 1.6e-12 77.0 49 81.6
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 2.1e-12 76.6 52 78.8
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 2.1e-12 76.6 49 83.7
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 2.1e-12 76.6 47 83.0
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 2.1e-12 76.6 43 88.4
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 2.8e-12 76.3 42 85.7
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 2.8e-12 76.3 49 79.6
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 3.6e-12 75.9 48 85.4
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 3.6e-12 75.9 47 80.9
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 3.6e-12 75.9 49 81.6
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 4.8e-12 75.5 42 85.7
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 4.8e-12 75.5 42 85.7
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 6.2e-12 75.1 49 81.6
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 6.2e-12 75.1 49 83.7
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 6.2e-12 75.1 50 76.0
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 8.1e-12 74.7 42 85.7
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 8.1e-12 74.7 48 77.1
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 8.1e-12 74.7 48 77.1
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 8.1e-12 74.7 48 77.1
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 8.1e-12 74.7 48 77.1
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 8.1e-12 74.7 48 77.1
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 8.1e-12 74.7 48 77.1
unitig_699.g19272 Utricularia gibba HOM05D003803 ORTHO05D004456 8.1e-12 74.7 42 85.7
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 1.4e-11 73.9 49 71.4
unitig_85.g27251 Utricularia gibba HOM05D003803 ORTHO05D004456 1.4e-11 73.9 41 85.4
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 2.4e-11 73.2 43 83.7
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 2.4e-11 73.2 49 77.6
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 2.4e-11 73.2 49 77.6
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 2.4e-11 73.2 43 81.4
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 2.4e-11 73.2 49 77.6
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 2.4e-11 73.2 42 81.0
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 2.4e-11 73.2 42 81.0
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 2.4e-11 73.2 48 81.2
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 3.1e-11 72.8 42 83.3
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 5.3e-11 72.0 48 75.0
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 6.9e-11 71.6 49 71.4
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 6.9e-11 71.6 43 81.4
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 6.9e-11 71.6 192 33.9
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 6.9e-11 71.6 44 77.3
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 1.2e-10 70.9 42 83.3
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 1.2e-10 70.9 49 75.5
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 1.5e-10 70.5 49 75.5
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.5e-10 70.5 49 73.5
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 1.5e-10 70.5 49 75.5
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 1.5e-10 70.5 42 83.3
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 2.0e-10 70.1 42 83.3
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.0e-10 70.1 51 76.5
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.0e-10 70.1 51 76.5
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 2.0e-10 70.1 51 76.5
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 2.0e-10 70.1 42 83.3
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 2.6e-10 69.7 37 89.2
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 2.6e-10 69.7 46 76.1
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 2.6e-10 69.7 37 89.2
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 2.6e-10 69.7 49 73.5
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 2.6e-10 69.7 43 76.7
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 2.6e-10 69.7 43 76.7
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 3.4e-10 69.3 42 81.0
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 3.4e-10 69.3 49 75.5
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 4.5e-10 68.9 49 69.4
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 4.5e-10 68.9 49 69.4
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 4.5e-10 68.9 42 81.0
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 7.6e-10 68.2 46 76.1
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 7.6e-10 68.2 37 86.5
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 7.6e-10 68.2 37 86.5
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 7.6e-10 68.2 48 72.9
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 1.3e-09 67.4 49 71.4
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.3e-09 67.4 38 86.8
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 1.7e-09 67.0 50 70.0
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 1.7e-09 67.0 50 70.0
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 2.2e-09 66.6 58 63.8
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 2.2e-09 66.6 58 63.8
BcaB05g22827 Brassica carinata HOM05D003803 ORTHO05D004456 2.9e-09 66.2 62 61.3
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 3.8e-09 65.9 43 76.7
BcaC03g13781 Brassica carinata HOM05D003803 ORTHO05D004456 3.8e-09 65.9 60 61.7
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 3.8e-09 65.9 60 61.7
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 3.8e-09 65.9 42 76.2
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 3.8e-09 65.9 176 37.5
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 8.4e-09 64.7 33 90.9
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 8.4e-09 64.7 49 73.5
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 8.4e-09 64.7 49 73.5
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 1.1e-08 64.3 42 83.3
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.1e-08 64.3 49 75.5
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 1.1e-08 64.3 48 70.8
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 1.1e-08 64.3 42 73.8
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 2.4e-08 63.2 37 75.7
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 3.2e-08 62.8 33 87.9
CSS0005199 Camellia sinensis var. sinensis HOM05D003803 ORTHO05D004456 3.2e-08 62.8 41 82.9
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 3.2e-08 62.8 191 38.7
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 4.2e-08 62.4 42 73.8
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 4.2e-08 62.4 49 71.4
Oeu060649.1 Olea europaea HOM05D003803 ORTHO05D004456 7.1e-08 61.6 49 69.4
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 9.3e-08 61.2 52 61.5
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 9.3e-08 61.2 52 61.5
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 9.3e-08 61.2 42 71.4
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 9.3e-08 61.2 49 73.5
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 2.1e-07 60.1 45 73.3
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 2.7e-07 59.7 39 69.2
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 3.5e-07 59.3 42 73.8
Hma1.2p1_0291F.1_g114940 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 6.0e-07 58.5 37 75.7
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 1.0e-06 57.8 31 80.6
THA.LOC104808881 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.3e-06 57.4 43 67.4
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 1.8e-06 57.0 31 80.6
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 1.8e-06 57.0 31 80.6
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 2.3e-06 56.6 45 68.9
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 3.9e-06 55.8 47 63.8
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 3.9e-06 55.8 47 63.8
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 5.1e-06 55.5 38 65.8
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 5.1e-06 55.5 36 72.2
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 5.1e-06 55.5 47 68.1
Medtr4g125015 Medicago truncatula HOM05D003803 ORTHO05D004456 6.7e-06 55.1 27 92.6
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 8.7e-06 54.7 48 60.4


User provided reference genes

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