Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.9e-22 108.2 53 100.0
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.5e-11 72.0 36 97.2
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 3.4e-11 70.9 36 94.4
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 4.5e-11 70.5 36 94.4
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 4.5e-11 70.5 36 94.4
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 5.8e-11 70.1 36 94.4
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 2.2e-10 68.2 36 88.9
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 2.9e-10 67.8 36 88.9
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 2.9e-10 67.8 36 88.9
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 4.9e-10 67.0 36 86.1
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 4.9e-10 67.0 36 88.9
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 6.4e-10 66.6 36 83.3
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 8.4e-10 66.2 36 86.1
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 8.4e-10 66.2 36 86.1
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 8.4e-10 66.2 36 86.1
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 1.1e-09 65.9 36 86.1
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 1.1e-09 65.9 36 83.3
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 1.1e-09 65.9 36 86.1
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 1.1e-09 65.9 36 86.1
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.1e-09 65.9 36 86.1
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.1e-09 65.9 36 86.1
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.1e-09 65.9 36 86.1
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.1e-09 65.9 36 86.1
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 1.1e-09 65.9 36 86.1
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 1.1e-09 65.9 36 86.1
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 1.1e-09 65.9 36 83.3
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 1.1e-09 65.9 36 86.1
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 1.1e-09 65.9 36 86.1
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 1.4e-09 65.5 36 86.1
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 1.4e-09 65.5 36 86.1
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 1.4e-09 65.5 36 86.1
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 1.9e-09 65.1 36 83.3
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 1.9e-09 65.1 36 83.3
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 1.9e-09 65.1 36 83.3
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 1.9e-09 65.1 36 83.3
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 1.9e-09 65.1 36 83.3
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 2.4e-09 64.7 36 83.3
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 2.4e-09 64.7 36 83.3
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 2.4e-09 64.7 36 83.3
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 2.4e-09 64.7 36 83.3
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 3.2e-09 64.3 36 83.3
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 3.2e-09 64.3 36 83.3
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 3.2e-09 64.3 36 80.6
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 3.2e-09 64.3 36 80.6
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 3.2e-09 64.3 36 83.3
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 3.2e-09 64.3 36 83.3
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 3.2e-09 64.3 36 83.3
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 3.2e-09 64.3 36 83.3
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 3.2e-09 64.3 36 83.3
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 3.2e-09 64.3 36 83.3
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 4.2e-09 63.9 36 83.3
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 4.2e-09 63.9 36 80.6
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 4.2e-09 63.9 36 80.6
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 4.2e-09 63.9 36 80.6
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 4.2e-09 63.9 36 80.6
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 4.2e-09 63.9 36 83.3
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 4.2e-09 63.9 36 83.3
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 4.2e-09 63.9 36 83.3
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 5.5e-09 63.5 36 83.3
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 5.5e-09 63.5 36 80.6
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 5.5e-09 63.5 36 80.6
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 5.5e-09 63.5 36 80.6
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 5.5e-09 63.5 36 80.6
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 5.5e-09 63.5 36 80.6
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 5.5e-09 63.5 36 80.6
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 5.5e-09 63.5 36 77.8
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 5.5e-09 63.5 36 83.3
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 7.1e-09 63.2 36 80.6
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 7.1e-09 63.2 36 80.6
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 7.1e-09 63.2 36 80.6
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 7.1e-09 63.2 36 80.6
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 9.3e-09 62.8 36 80.6
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 9.3e-09 62.8 36 80.6
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 9.3e-09 62.8 36 80.6
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 9.3e-09 62.8 36 80.6
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 9.3e-09 62.8 36 77.8
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 1.2e-08 62.4 36 80.6
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 1.2e-08 62.4 36 80.6
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 1.2e-08 62.4 36 80.6
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 1.2e-08 62.4 36 80.6
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 1.2e-08 62.4 36 80.6
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 1.2e-08 62.4 36 80.6
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 1.2e-08 62.4 36 80.6
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 1.2e-08 62.4 36 80.6
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 1.2e-08 62.4 36 80.6
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 1.2e-08 62.4 36 80.6
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 1.2e-08 62.4 36 80.6
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 1.2e-08 62.4 36 80.6
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 1.2e-08 62.4 36 80.6
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 1.2e-08 62.4 36 80.6
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 1.2e-08 62.4 36 80.6
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 1.2e-08 62.4 36 80.6
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 1.2e-08 62.4 36 80.6
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 1.2e-08 62.4 36 80.6
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 1.2e-08 62.4 36 80.6
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 1.2e-08 62.4 36 80.6
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 1.2e-08 62.4 36 80.6
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 1.2e-08 62.4 36 80.6
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 1.2e-08 62.4 36 80.6
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 1.2e-08 62.4 36 80.6
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 1.2e-08 62.4 36 80.6
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 1.2e-08 62.4 36 80.6
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 1.2e-08 62.4 36 80.6
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 1.2e-08 62.4 36 77.8
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 1.2e-08 62.4 36 80.6
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 1.6e-08 62.0 36 80.6
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.6e-08 62.0 36 77.8
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 1.6e-08 62.0 36 80.6
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 2.1e-08 61.6 36 80.6
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 2.1e-08 61.6 36 80.6
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 2.1e-08 61.6 36 77.8
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 2.1e-08 61.6 36 77.8
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 2.1e-08 61.6 36 77.8
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 2.1e-08 61.6 36 75.0
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 2.1e-08 61.6 36 80.6
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 2.7e-08 61.2 36 77.8
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 2.7e-08 61.2 36 77.8
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 2.7e-08 61.2 36 77.8
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 2.7e-08 61.2 36 75.0
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 2.7e-08 61.2 36 75.0
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 2.7e-08 61.2 36 77.8
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 2.7e-08 61.2 36 75.0
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 2.7e-08 61.2 36 75.0
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 3.5e-08 60.8 36 80.6
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 3.5e-08 60.8 36 77.8
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 4.6e-08 60.5 41 65.9
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 1.0e-07 59.3 36 75.0
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 1.8e-07 58.5 36 77.8
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 1.8e-07 58.5 36 75.0
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 2.3e-07 58.2 36 72.2
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 2.3e-07 58.2 36 75.0
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 2.3e-07 58.2 36 75.0
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 3.0e-07 57.8 36 75.0
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 3.9e-07 57.4 36 72.2
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 6.7e-07 56.6 36 69.4
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 8.7e-07 56.2 36 69.4
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 8.7e-07 56.2 41 61.0
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 1.9e-06 55.1 36 63.9
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 3.3e-06 54.3 33 75.8
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 4.3e-06 53.9 36 69.4


User provided reference genes

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