Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 0.0e+00 1931.8 1014 100.0
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 0.0e+00 1853.6 1014 95.8
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 1.1e-195 688.0 596 64.1
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 1.8e-124 451.4 1149 35.6
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 2.3e-119 434.5 1216 32.6
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 6.1e-117 426.4 1248 33.3
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 8.3e-114 416.0 1102 32.6
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 1.7e-111 408.3 1106 33.4
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 2.6e-107 394.4 1137 33.8
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 5.8e-107 393.3 1077 33.4
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 1.7e-103 381.7 1076 34.4
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 4.3e-102 377.1 1135 32.7
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 1.1e-100 372.5 1154 30.5
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 3.5e-96 357.5 1100 32.9
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 1.6e-93 348.6 1290 30.9
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 9.2e-89 332.8 1116 30.9
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 2.1e-88 331.6 1239 29.3
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 1.7e-87 328.6 1284 29.4
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 1.1e-86 325.9 1130 30.4
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 4.3e-86 323.9 1236 29.0
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 4.3e-86 323.9 1084 30.9
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 1.8e-84 318.5 1147 31.0
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 4.0e-84 317.4 1160 30.3
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 1.5e-83 315.5 1113 31.3
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 4.2e-81 307.4 1061 31.6
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 2.7e-80 304.7 1110 29.7
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.7e-79 302.0 1288 28.3
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 8.7e-79 299.7 1089 29.7
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 2.5e-78 298.1 1377 28.1
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 5.6e-78 297.0 640 38.1
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 1.3e-77 295.8 1054 30.8
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 3.1e-76 291.2 1142 30.1
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 5.3e-76 290.4 1150 29.2
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 2.2e-74 285.0 1051 30.3
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 2.1e-72 278.5 1136 27.9
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 3.5e-72 277.7 1064 31.5
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 4.6e-72 277.3 1100 28.2
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 7.8e-72 276.6 1060 29.2
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 5.6e-70 270.4 1168 28.3
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 4.8e-69 267.3 1049 31.0
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 6.2e-69 266.9 1063 29.2
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 1.1e-68 266.2 1126 28.2
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 1.4e-68 265.8 1161 28.4
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 5.3e-68 263.8 1135 27.9
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 1.2e-67 262.7 1044 29.1
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.7e-66 258.8 1059 30.5
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 4.9e-66 257.3 645 34.4
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 4.2e-65 254.2 1108 28.4
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 7.1e-65 253.4 1066 28.5
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 1.6e-64 252.3 473 39.3
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 7.9e-64 250.0 1180 27.3
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 7.9e-64 250.0 1171 27.8
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.3e-63 249.2 1173 26.8
TAR365G0953 Trochodendron aralioides HOM05D005839 ORTHO05D005686 1.1e-62 246.1 504 39.5
FAN22G0032 Fragaria x ananassa HOM05D005839 ORTHO05D005686 6.2e-61 240.4 439 41.0
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 4.5e-59 234.2 1050 29.6
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 2.2e-58 231.9 1117 28.5
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 4.9e-58 230.7 1051 29.7
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 6.4e-58 230.3 1070 28.8
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 6.4e-58 230.3 1082 26.3
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 4.2e-57 227.6 409 39.9
Lj3A356G9 Lonicera japonica HOM05D005839 ORTHO05D005686 3.0e-55 221.5 954 29.7
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 5.1e-55 220.7 1064 27.9
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.9e-54 218.8 1066 28.0
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 5.7e-54 217.2 1082 27.6
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 7.4e-54 216.9 572 34.6
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 4.0e-52 211.1 1237 26.4
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 4.0e-52 211.1 1035 27.4
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 2.9e-50 204.9 1071 26.7
Lj3A375G30 Lonicera japonica HOM05D005839 ORTHO05D005686 6.5e-50 203.8 922 28.5
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 2.5e-49 201.8 1095 26.8
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 5.5e-49 200.7 1010 27.7
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 7.1e-49 200.3 1124 27.1
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 3.9e-47 194.5 1155 26.6
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 7.4e-46 190.3 1143 26.6
Gohir.A03G095700 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.3e-45 189.5 1015 28.8
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 1.4e-44 186.0 1132 26.5
PSO063G0130 Papaver somniferum HOM05D037519 ORTHO05D037279 2.4e-44 185.3 1038 26.7
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 2.4e-44 185.3 654 30.3
PSO017G5422 Papaver somniferum HOM05D037519 ORTHO05D037279 1.2e-43 183.0 1043 26.8
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 1.3e-42 179.5 1060 24.8
Atru.chr3.1776 Acer truncatum HOM05D005839 ORTHO05D005686 5.0e-42 177.6 915 27.8
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 4.2e-41 174.5 1058 25.3
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 2.5e-38 165.2 1053 25.3
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 3.3e-38 164.9 172 52.9
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 1.7e-37 162.5 1096 25.3
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 2.2e-37 162.2 1083 25.7
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 5.3e-36 157.5 210 43.3
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 9.1e-36 156.8 244 43.0
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 1.2e-35 156.4 1119 26.2
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 4.5e-35 154.5 1117 26.3
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 2.2e-34 152.1 1026 24.5
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 5.5e-33 147.5 1056 25.9
ECA233G5455 Erigeron canadensis HOM05D005839 ORTHO05D005686 2.7e-32 145.2 320 36.9
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 3.6e-32 144.8 989 25.8
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 1.4e-31 142.9 273 38.8
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 3.9e-31 141.4 619 28.6
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 4.8e-29 134.4 287 36.9
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 6.3e-29 134.0 254 40.2
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 4.5e-27 127.9 249 35.7
Duzib151G0492 Durio zibethinus HOM05D005839 ORTHO05D005686 5.5e-25 120.9 324 32.4
Lalb_Chr07g0186981 Lupinus albus HOM05D005839 ORTHO05D005686 4.7e-24 117.9 228 38.2
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 2.4e-20 105.5 224 34.8
Actinidia24785 Actinidia chinensis HOM05D005839 ORTHO05D005686 3.1e-20 105.1 380 29.7
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 5.3e-20 104.4 250 36.0
Lalb_Chr12g0205781 Lupinus albus HOM05D005839 ORTHO05D005686 5.3e-20 104.4 834 25.9
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 7.7e-19 100.5 1030 24.2
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 2.2e-18 99.0 129 44.2
Hund19024 Selenicereus undatus HOM05D005839 ORTHO05D005686 2.9e-18 98.6 318 32.4
TAR622G0416 Trochodendron aralioides HOM05D007115 ORTHO05D008923 5.0e-18 97.8 93 59.1
Cpa.g.sc157.15 Carica papaya HOM05D005839 ORTHO05D005686 1.1e-17 96.7 492 23.8
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 7.2e-17 94.0 1034 22.1
CDE05G0606 Ceratophyllum demersum HOM05D062397 ORTHO05D043856 1.6e-16 92.8 192 33.9
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 5.2e-15 87.8 109 49.5
arahy.Tifrunner.gnm1.ann1.52QBHW Arachis hypogaea HOM05D005839 ORTHO05D005686 6.8e-15 87.4 114 48.2
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 1.5e-14 86.3 122 44.3
Cpa.g.sc157.18 Carica papaya HOM05D005839 ORTHO05D005686 4.4e-14 84.7 150 39.3
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 5.7e-14 84.3 1057 23.7
AL7G42170 Arabidopsis lyrata HOM05D010750 ORTHO05D005686 2.8e-13 82.0 165 35.8
Nn1g08130 Nelumbo nucifera HOM05D005839 ORTHO05D005686 3.7e-13 81.6 1054 22.2
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 1.1e-12 80.1 344 24.7
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 5.4e-12 77.8 125 37.6
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 1.2e-11 76.6 150 36.7
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 1.2e-11 76.6 150 36.7
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 1.2e-11 76.6 116 36.2
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 1.2e-11 76.6 455 25.3
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 5.9e-11 74.3 283 27.2
Glyma.18G003300 Glycine max HOM05D005839 ORTHO05D005686 5.9e-11 74.3 440 25.5
Lalb_Chr07g0186961 Lupinus albus HOM05D005839 ORTHO05D005686 1.0e-10 73.6 137 36.5
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 1.3e-10 73.2 245 27.8
C04p41620 Brassica napus HOM05D010750 ORTHO05D005686 1.3e-10 73.2 245 27.8
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 1.3e-10 73.2 252 28.2
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 2.9e-10 72.0 332 26.8
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 2.9e-10 72.0 1026 20.8
arahy.Tifrunner.gnm1.ann1.Q2NVSC Arachis hypogaea HOM05D005839 ORTHO05D000011 5.0e-10 71.2 98 46.9
FvH4_1g13820 Fragaria vesca HOM05D005839 ORTHO05D005686 8.5e-10 70.5 55 50.9
Os09g0502100 Oryza sativa ssp. japonica HOM05D020277 ORTHO05D023046 1.1e-09 70.1 126 31.7
BraA08t34382Z Brassica rapa HOM05D010750 ORTHO05D005686 5.5e-09 67.8 377 24.4
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 2.7e-08 65.5 574 24.0
arahy.Tifrunner.gnm1.ann1.CIA2YT Arachis hypogaea HOM05D005839 ORTHO05D005686 4.7e-08 64.7 54 51.9
Glyma.11G253800 Glycine max HOM05D005839 ORTHO05D005686 8.0e-08 63.9 309 27.5
A08p24270 Brassica napus HOM05D010750 ORTHO05D005686 5.2e-07 61.2 543 23.6
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 5.2e-07 61.2 229 25.8
QL06p027203 Quercus lobata HOM05D034196 ORTHO05D005686 6.8e-07 60.8 31 77.4
SEGI_24376 Sequoiadendron giganteum HOM05D005839 ORTHO05D005686 6.8e-07 60.8 80 38.8
Lalb_Chr12g0205771 Lupinus albus HOM05D005839 ORTHO05D005686 1.5e-06 59.7 57 50.9


User provided reference genes

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