Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1555 Trochodendron aralioides HOM05D001886 ORTHO05D005666 1.4e-99 366.3 186 100.0
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 8.0e-31 137.9 331 32.9
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 5.4e-27 125.2 332 31.9
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 2.0e-26 123.2 330 30.0
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 3.5e-26 122.5 330 31.8
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 4.5e-26 122.1 332 31.0
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 3.8e-25 119.0 332 31.6
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 1.1e-24 117.5 345 30.4
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 1.6e-23 113.6 332 29.8
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 3.6e-23 112.5 332 29.8
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 8.0e-23 111.3 329 30.1
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 1.8e-22 110.2 322 31.7
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 3.0e-22 109.4 219 36.5
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 6.8e-22 108.2 219 36.1
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 6.8e-22 108.2 219 35.2
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 8.9e-22 107.8 167 41.3
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 8.9e-22 107.8 328 29.6
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 2.6e-21 106.3 336 29.5
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 2.6e-21 106.3 219 35.6
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 2.6e-21 106.3 219 35.6
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 4.4e-21 105.5 328 29.6
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 5.7e-21 105.1 331 29.9
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 5.7e-21 105.1 168 41.1
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 5.7e-21 105.1 265 33.2
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 1.3e-20 104.0 298 30.9
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 1.7e-20 103.6 328 29.3
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.2e-20 103.2 326 29.8
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 2.2e-20 103.2 328 29.6
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 2.8e-20 102.8 328 29.6
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 2.8e-20 102.8 168 40.5
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 3.7e-20 102.4 166 41.0
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 3.7e-20 102.4 330 29.1
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 8.3e-20 101.3 324 30.2
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.1e-19 100.9 265 32.5
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.8e-19 100.1 329 28.6
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 1.8e-19 100.1 333 27.9
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 2.4e-19 99.8 324 29.9
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 2.4e-19 99.8 324 29.0
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 3.1e-19 99.4 325 29.2
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 3.1e-19 99.4 329 29.5
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 3.1e-19 99.4 328 28.7
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 4.1e-19 99.0 178 39.9
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 4.1e-19 99.0 131 45.0
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 5.4e-19 98.6 324 28.7
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 1.2e-18 97.4 336 28.6
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 1.2e-18 97.4 213 36.2
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 1.6e-18 97.1 283 30.4
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.7e-18 96.3 162 40.7
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 3.5e-18 95.9 167 38.3
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 4.5e-18 95.5 203 34.5
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 5.9e-18 95.1 162 39.5
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 5.9e-18 95.1 196 34.7
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 5.9e-18 95.1 162 39.5
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 5.9e-18 95.1 172 39.5
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 1.0e-17 94.4 167 37.1
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.0e-17 94.4 164 39.6
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 1.3e-17 94.0 295 30.2
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.7e-17 93.6 329 28.6
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 1.7e-17 93.6 337 28.8
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.7e-17 93.6 337 28.8
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 2.3e-17 93.2 329 28.9
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 3.9e-17 92.4 326 28.5
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 5.0e-17 92.0 341 28.2
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 5.0e-17 92.0 335 29.0
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 6.6e-17 91.7 324 27.5
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 6.6e-17 91.7 324 28.1
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 6.6e-17 91.7 326 26.7
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 8.6e-17 91.3 319 27.9
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.5e-16 90.5 329 28.3
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 1.5e-16 90.5 331 28.1
TAR629G3448 Trochodendron aralioides HOM05D001163 ORTHO05D001769 1.5e-16 90.5 54 92.6
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 2.5e-16 89.7 171 39.2
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 4.3e-16 89.0 170 37.1
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 4.3e-16 89.0 219 36.5
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 5.6e-16 88.6 331 28.4
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 9.5e-16 87.8 162 37.7
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 1.2e-15 87.4 329 27.4
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 1.2e-15 87.4 328 26.8
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 1.6e-15 87.0 329 27.4
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 1.6e-15 87.0 164 39.0
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 1.6e-15 87.0 350 27.7
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 2.1e-15 86.7 164 38.4
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 2.8e-15 86.3 324 27.5
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 2.8e-15 86.3 329 26.7
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 3.6e-15 85.9 327 27.5
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 3.6e-15 85.9 326 27.3
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 4.7e-15 85.5 308 28.9
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 6.1e-15 85.1 166 38.6
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 8.0e-15 84.7 164 37.2
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 8.0e-15 84.7 164 36.0
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 8.0e-15 84.7 329 28.0
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 1.0e-14 84.3 328 27.1
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 1.4e-14 84.0 329 27.7
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 1.4e-14 84.0 329 27.7
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 1.8e-14 83.6 325 26.5
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 2.3e-14 83.2 201 31.3
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 2.3e-14 83.2 64 67.2
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 3.1e-14 82.8 190 34.7
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 4.0e-14 82.4 177 36.7
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 4.0e-14 82.4 324 26.5
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 4.0e-14 82.4 324 26.5
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 5.2e-14 82.0 173 34.1
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 5.2e-14 82.0 332 26.8
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 5.2e-14 82.0 332 26.5
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 5.2e-14 82.0 332 26.5
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 6.8e-14 81.6 332 26.5
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 8.9e-14 81.3 303 27.7
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 8.9e-14 81.3 168 37.5
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 2.0e-13 80.1 303 28.4
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 2.6e-13 79.7 326 26.7
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 2.6e-13 79.7 162 37.0
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 2.6e-13 79.7 166 35.5
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 4.4e-13 79.0 160 36.2
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 5.8e-13 78.6 297 27.3
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 1.7e-12 77.0 160 35.0
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 1.7e-12 77.0 124 42.7
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 3.7e-12 75.9 169 33.1
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 4.9e-12 75.5 320 26.6
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 6.4e-12 75.1 148 35.8
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 1.4e-11 73.9 316 25.9
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 3.2e-11 72.8 39 79.5
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 4.6e-10 68.9 164 31.1
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 7.8e-10 68.2 203 29.1
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 1.3e-09 67.4 148 30.4
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 3.0e-09 66.2 300 24.3
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.1e-08 64.3 90 43.3
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 1.9e-08 63.5 55 61.8
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 1.9e-08 63.5 158 32.3
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 2.5e-08 63.2 68 48.5
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 3.3e-08 62.8 161 29.8
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 7.3e-08 61.6 68 55.9
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.2e-07 60.8 50 68.0
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 1.6e-07 60.5 49 67.3
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 1.6e-07 60.5 140 31.4
TAR365G0008 Trochodendron aralioides HOM05D001163 ORTHO05D001769 6.2e-07 58.5 37 89.2
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 8.0e-07 58.2 56 60.7
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 3.1e-06 56.2 38 65.8


User provided reference genes

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