Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1440 Trochodendron aralioides HOM05D006150 ORTHO05D007745 3.4e-180 634.8 306 100.0
MBI04_g13858_MAGBIO Magnolia biondii HOM05D006150 ORTHO05D007745 1.7e-150 536.2 305 83.3
CSS0019555 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 1.1e-149 533.5 309 82.2
Rhsim07G0136400 Rhododendron simsii HOM05D006150 ORTHO05D007745 1.0e-147 526.9 306 81.4
COL.COLO4_07285 Corchorus olitorius HOM05D006150 ORTHO05D007745 6.5e-147 524.2 297 82.8
Gohir.A12G212700 Gossypium hirsutum HOM05D006150 ORTHO05D007745 2.5e-146 522.3 307 81.4
Gorai.008G230800 Gossypium raimondii HOM05D006150 ORTHO05D007745 7.2e-146 520.8 297 81.8
Thecc.03G240100 Theobroma cacao HOM05D006150 ORTHO05D007745 1.6e-145 519.6 298 81.5
Duzib084G0008 Durio zibethinus HOM05D006150 ORTHO05D007745 3.6e-145 518.5 297 82.5
Hma1.2p1_0570F.1_g180430 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 3.6e-145 518.5 287 82.6
Nn6g33757 Nelumbo nucifera HOM05D006150 ORTHO05D007745 3.6e-145 518.5 287 84.3
Gohir.D12G215200 Gossypium hirsutum HOM05D006150 ORTHO05D007745 6.1e-145 517.7 297 81.1
Sopen08g026350 Solanum pennellii HOM05D006150 ORTHO05D007745 6.1e-145 517.7 306 79.7
Solyc08g077840.3 Solanum lycopersicum HOM05D006150 ORTHO05D007745 1.8e-144 516.2 306 79.4
Cfa012327 Carpinus fangiana HOM05D006150 ORTHO05D007745 2.3e-144 515.8 295 82.0
CANSAT21G0710 Cannabis sativa HOM05D006150 ORTHO05D007745 1.5e-143 513.1 295 81.4
Ciclev10021365m.g Citrus clementina HOM05D006150 ORTHO05D007745 5.7e-143 511.1 296 79.4
PSO675G6476 Papaver somniferum HOM05D006150 ORTHO05D007745 7.5e-143 510.8 297 81.5
PGSC0003DMG400026243 Solanum tuberosum HOM05D006150 ORTHO05D007745 7.5e-143 510.8 306 78.8
Lj8A277T42 Lonicera japonica HOM05D006150 ORTHO05D007745 9.7e-143 510.4 286 82.5
TWI60G0542 Tripterygium wilfordii HOM05D006150 ORTHO05D007745 2.8e-142 508.8 306 77.5
PSO732G0290 Papaver somniferum HOM05D006150 ORTHO05D007745 1.1e-141 506.9 297 81.1
Potri.003G083600 Populus trichocarpa HOM05D006150 ORTHO05D007745 1.8e-141 506.1 298 81.5
CAN.G572.11 Capsicum annuum HOM05D006150 ORTHO05D007745 5.3e-141 504.6 301 80.1
ClCG10G005070 Citrullus lanatus HOM05D006150 ORTHO05D007745 9.1e-141 503.8 297 78.8
Manes.01G089000 Manihot esculenta HOM05D006150 ORTHO05D007745 1.6e-140 503.1 298 80.2
MSTRG.6640 Avicennia marina HOM05D006150 ORTHO05D007745 2.7e-140 502.3 306 78.4
RcHm_v2.0_Chr7g0205681 Rosa chinensis HOM05D006150 ORTHO05D007745 2.7e-140 502.3 299 80.6
CsaV3_3G004750 Cucumis sativus L. HOM05D006150 ORTHO05D007745 4.5e-140 501.5 297 78.8
MD04G1055500 Malus domestica HOM05D006150 ORTHO05D007745 1.7e-139 499.6 295 80.0
Cc08_g11330 Coffea canephora HOM05D006150 ORTHO05D007745 5.0e-139 498.0 306 76.8
CiPaw.11G072300 Carya illinoinensis HOM05D006150 ORTHO05D007745 6.5e-139 497.7 294 78.9
DCAR_008330 Daucus carota HOM05D006150 ORTHO05D007745 8.5e-139 497.3 295 80.0
THA.LOC104807929 Tarenaya hassleriana HOM05D006150 ORTHO05D007745 1.1e-138 496.9 295 78.3
CARHR223610 Cardamine hirsuta HOM05D006150 ORTHO05D007745 1.9e-138 496.1 296 77.7
AT4G17050 Arabidopsis thaliana HOM05D006150 ORTHO05D007745 2.5e-138 495.7 296 78.0
FAN04G1813 Fragaria x ananassa HOM05D006150 ORTHO05D007745 2.5e-138 495.7 298 79.5
Haze_08363 Corylus avellana HOM05D006150 ORTHO05D007745 2.1e-137 492.7 320 74.4
arahy.Tifrunner.gnm1.ann1.IPM3U6 Arachis hypogaea HOM05D006150 ORTHO05D007745 3.6e-137 491.9 293 78.2
AL7G37660 Arabidopsis lyrata HOM05D006150 ORTHO05D007745 4.7e-137 491.5 294 77.6
FvH4_5g20400 Fragaria vesca HOM05D006150 ORTHO05D007745 4.7e-137 491.5 299 78.9
Carub.0007s2437 Capsella rubella HOM05D006150 ORTHO05D007745 6.1e-137 491.1 295 77.6
FAN08G0760 Fragaria x ananassa HOM05D006150 ORTHO05D007745 6.1e-137 491.1 291 80.4
HanXRQChr17g0534011 Helianthus annuus HOM05D006150 ORTHO05D007745 8.0e-137 490.7 307 76.2
EL10Ac5g12270 Beta vulgaris HOM05D006150 ORTHO05D007745 1.0e-136 490.3 306 75.5
BraA03t14117Z Brassica rapa HOM05D006150 ORTHO05D007745 1.0e-136 490.3 306 75.2
Sed0022790 Sechium edule HOM05D006150 ORTHO05D007745 4.0e-136 488.4 302 75.2
BcaNung04656 Brassica carinata HOM05D006150 ORTHO05D007745 5.2e-136 488.0 306 74.8
C07p48520 Brassica napus HOM05D006150 ORTHO05D007745 8.8e-136 487.3 295 77.3
BolC7t45360H Brassica oleracea HOM05D006150 ORTHO05D007745 8.8e-136 487.3 295 77.3
ECA234G2169 Erigeron canadensis HOM05D006150 ORTHO05D007745 8.8e-136 487.3 299 77.3
Atru.chr9.1206 Acer truncatum HOM05D006150 ORTHO05D007745 2.0e-135 486.1 296 77.0
A03p50280 Brassica napus HOM05D006150 ORTHO05D007745 2.0e-135 486.1 306 75.2
C07p48460 Brassica napus HOM05D006150 ORTHO05D007745 4.4e-135 485.0 293 78.2
Ah.12g053980 Amaranthus hybridus HOM05D006150 ORTHO05D007745 7.5e-135 484.2 305 73.8
BcaC06g33538 Brassica carinata HOM05D006150 ORTHO05D007745 7.5e-135 484.2 304 75.0
Glyma.05G066500 Glycine max HOM05D006150 ORTHO05D007745 7.5e-135 484.2 293 76.5
Glyma.17G148400 Glycine max HOM05D006150 ORTHO05D007745 1.3e-134 483.4 295 75.9
arahy.Tifrunner.gnm1.ann1.YY6LCE Arachis hypogaea HOM05D006150 ORTHO05D007745 1.7e-134 483.0 293 77.8
Lalb_Chr09g0329771 Lupinus albus HOM05D006150 ORTHO05D007745 1.7e-134 483.0 299 75.9
PSO732G0039 Papaver somniferum HOM05D006150 ORTHO05D007745 1.7e-134 483.0 274 82.5
Eucgr.D02133 Eucalyptus grandis HOM05D006150 ORTHO05D007745 3.7e-134 481.9 297 77.8
BraA01t01953Z Brassica rapa HOM05D006150 ORTHO05D007745 6.3e-134 481.1 297 76.1
Sp7g17140 Schrenkiella parvula HOM05D006150 ORTHO05D007745 8.3e-134 480.7 295 76.3
Nitab4.5_0000500g0240 Nicotiana tabacum HOM05D006150 ORTHO05D007745 1.8e-133 479.6 310 76.1
Aqoxy5G02622 Aquilegia oxysepala HOM05D006150 ORTHO05D007745 2.4e-133 479.2 318 73.0
C07p48390 Brassica napus HOM05D006150 ORTHO05D007745 3.1e-133 478.8 293 77.5
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 3.1e-133 478.8 293 77.8
Lj4g0002003 Lotus japonicus HOM05D006150 ORTHO05D007745 3.1e-133 478.8 295 75.6
ATR0665G013 Amborella trichopoda HOM05D006150 ORTHO05D007745 5.4e-133 478.0 297 76.1
SalBow7G3619 Salvia bowleyana HOM05D006150 ORTHO05D007745 7.0e-133 477.6 278 79.9
BolC1t02493H Brassica oleracea HOM05D006150 ORTHO05D007745 2.0e-132 476.1 295 76.3
PGR031G0533 Punica granatum HOM05D006150 ORTHO05D007745 2.3e-131 472.6 260 83.1
Ca_22017_v3 Cicer arietinum L. HOM05D006150 ORTHO05D007745 5.0e-131 471.5 295 73.2
VMungo0251G1767 Vigna mungo HOM05D006150 ORTHO05D007745 6.6e-131 471.1 295 71.5
Phvul.003G225600 Phaseolus vulgaris HOM05D006150 ORTHO05D007745 1.9e-130 469.5 294 72.8
TPR.G25747 Trifolium pratense HOM05D006150 ORTHO05D007745 3.3e-130 468.8 295 73.2
Nitab4.5_0009451g0030 Nicotiana tabacum HOM05D006150 ORTHO05D007745 4.2e-130 468.4 312 74.0
QL12p008732 Quercus lobata HOM05D006150 ORTHO05D007745 7.2e-130 467.6 399 60.9
BcaNung00130 Brassica carinata HOM05D006150 ORTHO05D007745 2.8e-129 465.7 296 74.0
Medtr4g099290 Medicago truncatula HOM05D006150 ORTHO05D007745 1.0e-128 463.8 296 72.6
Os07g0495000 Oryza sativa ssp. japonica HOM05D006150 ORTHO05D007745 6.8e-128 461.1 302 72.8
A01p20260 Brassica napus HOM05D006150 ORTHO05D007745 1.4e-125 453.4 284 75.0
unitig_746.g26644 Utricularia gibba HOM05D006150 ORTHO05D007745 1.8e-125 453.0 296 71.3
HPP92_025744 Vanilla planifolia HOM05D006150 ORTHO05D007745 1.8e-125 453.0 306 71.9
Zm00001eb322060 Zea mays HOM05D006150 ORTHO05D007745 2.4e-125 452.6 282 75.5
Peaxi162Scf00301g00519 Petunia axillaris HOM05D006150 ORTHO05D007745 2.3e-123 446.0 287 74.6
Actinidia02195 Actinidia chinensis HOM05D006150 ORTHO05D007745 5.0e-123 444.9 259 79.2
Dinv28876 Davidia involucrata HOM05D006150 ORTHO05D007745 1.4e-120 436.8 246 84.1
Thhalv10026866m.g Eutrema salsugineum HOM05D006150 ORTHO05D007745 9.8e-119 430.6 309 69.3
Psat4g076080 Pisum sativum HOM05D006150 ORTHO05D007745 4.9e-118 428.3 274 71.9
SEGI_33649 Sequoiadendron giganteum HOM05D006150 ORTHO05D007745 2.4e-117 426.0 305 69.2
vmacro00832 Vaccinium macrocarpon HOM05D006150 ORTHO05D007745 1.2e-116 423.7 296 70.9
BcaC09g50439 Brassica carinata HOM05D006150 ORTHO05D007745 1.5e-114 416.8 296 69.3
C01p25410 Brassica napus HOM05D006150 ORTHO05D007745 1.5e-114 416.8 296 69.3
Aa31LG2G13130 Aethionema arabicum HOM05D006150 ORTHO05D007745 2.5e-114 416.0 320 64.1
Sc01g0007980 Simmondsia chinensis HOM05D006150 ORTHO05D007745 2.8e-113 412.5 246 76.8
Prupe.5G055300 Prunus persica HOM05D006150 ORTHO05D007745 7.8e-108 394.4 212 87.7
Oeu012348.1 Olea europaea HOM05D006150 ORTHO05D007745 2.6e-103 379.4 211 85.3
GSVIVG01003685001 Vitis vinifera HOM05D006150 ORTHO05D007745 3.4e-103 379.0 285 66.7
Pp3c9_12580 Physcomitrium patens HOM05D006150 ORTHO05D007745 2.9e-102 375.9 305 60.7
AagrBONN_evm.TU.Sc2ySwM_228.2274 Anthoceros agrestis HOM05D006150 ORTHO05D007745 1.9e-101 373.2 252 71.0
Mapoly0072s0097 Marchantia polymorpha HOM05D006150 ORTHO05D007745 2.4e-101 372.9 263 65.0
SGA_v2.0_scaffold181G39680 Striga asiatica HOM05D006150 ORTHO05D007745 3.0e-99 365.9 243 74.9
AUR62007167 Chenopodium quinoa HOM05D006150 ORTHO05D007745 4.4e-95 352.1 202 80.7
AUR62018839 Chenopodium quinoa HOM05D006150 ORTHO05D007745 9.9e-95 350.9 202 79.2
Lsat_1_v5_gn_3_15361 Lactuca sativa HOM05D006150 ORTHO05D007745 5.4e-93 345.1 254 68.9
Actinidia25909 Actinidia chinensis HOM05D006150 ORTHO05D007745 3.6e-81 305.8 306 54.9
Potri.001G150800 Populus trichocarpa HOM05D006150 ORTHO05D007745 2.5e-74 283.1 194 71.1
MCO07G379 Micromonas commoda HOM05D006150 ORTHO05D007745 4.6e-68 262.3 265 48.3
Cre06.g290000 Chlamydomonas reinhardtii HOM05D006150 ORTHO05D007745 3.0e-67 259.6 243 52.3
MD06G1047100 Malus domestica HOM05D006150 ORTHO05D007745 8.7e-67 258.1 268 53.7
Sabra01G0120800 Salix brachista HOM05D006150 ORTHO05D007745 3.9e-59 232.6 184 65.2
MELO3C014174.2 Cucumis melo HOM05D006150 ORTHO05D007745 1.5e-58 230.7 287 48.1
MCO04G282 Micromonas commoda HOM05D006150 ORTHO05D007745 1.5e-58 230.7 264 47.3
Hma1.2p1_0570F.1_g180440 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 1.6e-57 227.3 127 81.1
FAN18G0603 Fragaria x ananassa HOM05D006150 ORTHO05D007745 8.5e-54 214.9 146 74.0
CSS0048254 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 2.2e-41 173.7 97 84.5
Sabra01G0120600 Salix brachista HOM05D006150 ORTHO05D007745 7.7e-39 165.2 162 57.4
PSO717G0125 Papaver somniferum HOM05D006150 ORTHO05D007745 2.9e-38 163.3 98 77.6
BcaC01g03436 Brassica carinata HOM05D006150 ORTHO05D007745 2.4e-32 143.7 98 68.4
Cpa.g.sc98.38 Carica papaya HOM05D006150 ORTHO05D007745 1.2e-31 141.4 81 76.5
CBR_g38093 Chara braunii HOM05D006150 ORTHO05D007745 2.5e-29 133.7 66 84.8
GSVIVG01021810001 Vitis vinifera HOM05D006150 ORTHO05D007745 5.7e-18 95.9 73 64.4
Cpa.g.sc98.35 Carica papaya HOM05D006150 ORTHO05D007745 2.7e-15 87.0 56 67.9
Oeu040463.1 Olea europaea HOM05D001574 ORTHO05D000708 1.2e-12 78.2 57 68.4
Lsat_1_v5_gn_6_74120 Lactuca sativa HOM05D006150 ORTHO05D233887 7.0e-08 62.4 33 78.8
Lsat_1_v5_gn_2_23540 Lactuca sativa HOM05D002379 ORTHO05D003469 7.8e-07 58.9 89 36.0
Lsat_1_v5_gn_8_14120 Lactuca sativa HOM05D002379 ORTHO05D021531 7.8e-07 58.9 89 36.0
Lsat_1_v5_gn_9_81181 Lactuca sativa HOM05D002379 ORTHO05D003469 7.8e-07 58.9 89 36.0
Cpa.g.sc3814.1 Carica papaya HOM05D006150 ORTHO05D007745 1.0e-06 58.5 37 64.9
MELO3C000773.2 Cucumis melo HOM05D006150 ORTHO05D007745 5.0e-06 56.2 39 69.2


User provided reference genes

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