Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1364 Trochodendron aralioides HOM05D005046 ORTHO05D006194 9.2e-51 203.4 111 100.0
GSVIVG01034987001 Vitis vinifera HOM05D005046 ORTHO05D006194 3.3e-48 194.9 111 95.5
Lj6A691T78 Lonicera japonica HOM05D005046 ORTHO05D006194 9.6e-48 193.4 111 94.6
Dinv44282 Davidia involucrata HOM05D005046 ORTHO05D006194 8.1e-47 190.3 111 93.7
Glyma.17G033800 Glycine max HOM05D005046 ORTHO05D006194 6.9e-46 187.2 111 92.8
Dinv15163 Davidia involucrata HOM05D005046 ORTHO05D006194 1.2e-45 186.4 111 90.1
Lalb_Chr20g0120821 Lupinus albus HOM05D005046 ORTHO05D006194 1.5e-45 186.0 111 91.0
Nn3g21734 Nelumbo nucifera HOM05D005046 ORTHO05D006194 2.0e-45 185.7 111 91.9
Lalb_Chr18g0058661 Lupinus albus HOM05D005046 ORTHO05D006194 3.4e-45 184.9 111 91.0
Glyma.07G239500 Glycine max HOM05D005046 ORTHO05D006194 4.4e-45 184.5 111 91.0
Lj6g0015111 Lotus japonicus HOM05D005046 ORTHO05D006194 7.6e-45 183.7 111 89.2
TPR.G13743 Trifolium pratense HOM05D005046 ORTHO05D006194 7.6e-45 183.7 111 90.1
Aqoxy5G02541 Aquilegia oxysepala HOM05D005046 ORTHO05D006194 1.3e-44 183.0 111 90.1
Lsat_1_v5_gn_1_41381 Lactuca sativa HOM05D005046 ORTHO05D006194 1.3e-44 183.0 109 91.7
Medtr2g034010 Medicago truncatula HOM05D005046 ORTHO05D006194 1.3e-44 183.0 111 89.2
Phvul.003G114500 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 1.7e-44 182.6 111 89.2
VMungo1215G0235 Vigna mungo HOM05D005046 ORTHO05D006194 1.7e-44 182.6 111 89.2
CsaV3_6G028590 Cucumis sativus L. HOM05D005046 ORTHO05D006194 2.9e-44 181.8 111 88.3
CDE02G0992 Ceratophyllum demersum HOM05D005046 ORTHO05D006194 3.8e-44 181.4 111 86.5
HanXRQChr11g0353491 Helianthus annuus HOM05D005046 ORTHO05D006194 3.8e-44 181.4 109 91.7
Ca_00977_v3 Cicer arietinum L. HOM05D005046 ORTHO05D006194 4.9e-44 181.0 111 88.3
Psat1g160840 Pisum sativum HOM05D005046 ORTHO05D006194 8.4e-44 180.3 111 88.3
TWI73G0015 Tripterygium wilfordii HOM05D005046 ORTHO05D006194 8.4e-44 180.3 111 87.4
MELO3C021266.2 Cucumis melo HOM05D005046 ORTHO05D006194 1.1e-43 179.9 111 87.4
Manes.15G000300 Manihot esculenta HOM05D005046 ORTHO05D006194 1.1e-43 179.9 112 92.0
CSS0005662 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 1.4e-43 179.5 111 90.1
CSS0011224 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 1.4e-43 179.5 111 90.1
CSS0039452 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 1.4e-43 179.5 111 90.1
Glyma.15G139900 Glycine max HOM05D005046 ORTHO05D006194 1.4e-43 179.5 111 89.2
MD13G1153200 Malus domestica HOM05D005046 ORTHO05D006194 1.9e-43 179.1 111 90.1
MD16G1153600 Malus domestica HOM05D005046 ORTHO05D006194 1.9e-43 179.1 107 90.7
Phvul.006G118400 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 4.2e-43 177.9 111 89.2
VMungo0540G1157 Vigna mungo HOM05D005046 ORTHO05D006194 4.2e-43 177.9 111 89.2
arahy.Tifrunner.gnm1.ann1.4F0N5D Arachis hypogaea HOM05D005046 ORTHO05D006194 5.4e-43 177.6 111 85.6
arahy.Tifrunner.gnm1.ann1.KUZ2VC Arachis hypogaea HOM05D005046 ORTHO05D006194 5.4e-43 177.6 111 85.6
Prupe.1G116800 Prunus persica HOM05D005046 ORTHO05D006194 5.4e-43 177.6 112 89.3
Sed0022816 Sechium edule HOM05D005046 ORTHO05D006194 5.4e-43 177.6 111 85.6
Actinidia14256 Actinidia chinensis HOM05D005046 ORTHO05D006194 7.1e-43 177.2 111 88.3
Cfa015310 Carpinus fangiana HOM05D005046 ORTHO05D006194 7.1e-43 177.2 107 91.6
QL05p065557 Quercus lobata HOM05D005046 ORTHO05D006194 7.1e-43 177.2 107 92.5
MBI18_g37558_MAGBIO Magnolia biondii HOM05D005046 ORTHO05D006194 9.3e-43 176.8 133 77.4
PSO210G4010 Papaver somniferum HOM05D005046 ORTHO05D006194 1.2e-42 176.4 112 86.6
PSO761G0203 Papaver somniferum HOM05D005046 ORTHO05D006194 1.2e-42 176.4 112 86.6
Potri.010G146100 Populus trichocarpa HOM05D005046 ORTHO05D006194 2.1e-42 175.6 112 89.3
Sabra10G0112600 Salix brachista HOM05D005046 ORTHO05D006194 4.6e-42 174.5 110 88.2
CiPaw.01G138200 Carya illinoinensis HOM05D005046 ORTHO05D006194 1.3e-41 172.9 112 87.5
Ciclev10006264m.g Citrus clementina HOM05D005046 ORTHO05D006194 1.3e-41 172.9 112 87.5
CANSAT78G2375 Cannabis sativa HOM05D005046 ORTHO05D006194 1.7e-41 172.6 108 87.0
PGSC0003DMG400004620 Solanum tuberosum HOM05D005046 ORTHO05D006194 3.0e-41 171.8 111 85.6
SGA_v2.0_scaffold104G30073 Striga asiatica HOM05D005046 ORTHO05D006194 3.9e-41 171.4 109 86.2
ATR0693G376 Amborella trichopoda HOM05D005046 ORTHO05D006194 5.1e-41 171.0 111 87.4
ClCG06G004560 Citrullus lanatus HOM05D005046 ORTHO05D006194 5.1e-41 171.0 127 76.4
Solyc12g099240.2 Solanum lycopersicum HOM05D005046 ORTHO05D006194 5.1e-41 171.0 111 83.8
Sopen12g033920 Solanum pennellii HOM05D005046 ORTHO05D006194 5.1e-41 171.0 111 83.8
Eucgr.H04047 Eucalyptus grandis HOM05D005046 ORTHO05D006194 1.1e-40 169.9 112 87.5
Glyma.09G035300 Glycine max HOM05D005046 ORTHO05D006194 1.1e-40 169.9 111 85.6
HPP92_016092 Vanilla planifolia HOM05D005046 ORTHO05D006194 1.1e-40 169.9 106 85.8
CAN.G484.64 Capsicum annuum HOM05D005046 ORTHO05D006194 1.5e-40 169.5 111 86.5
CiPaw.02G074700 Carya illinoinensis HOM05D005046 ORTHO05D006194 2.5e-40 168.7 109 84.4
MSTRG.10153 Avicennia marina HOM05D005046 ORTHO05D006194 3.3e-40 168.3 109 86.2
COL.COLO4_34610 Corchorus olitorius HOM05D005046 ORTHO05D006194 4.3e-40 167.9 111 83.8
Migut.G00065 Erythranthe guttata HOM05D005046 ORTHO05D006194 5.6e-40 167.5 109 84.4
Rhsim04G0239300 Rhododendron simsii HOM05D005046 ORTHO05D006194 7.3e-40 167.2 112 83.0
Haze_01302 Corylus avellana HOM05D005046 ORTHO05D006194 9.6e-40 166.8 107 88.8
Duzib212G1042 Durio zibethinus HOM05D005046 ORTHO05D006194 1.3e-39 166.4 111 82.9
Gohir.D01G023544 Gossypium hirsutum HOM05D005046 ORTHO05D006194 1.3e-39 166.4 111 82.9
Gorai.002G030300 Gossypium raimondii HOM05D005046 ORTHO05D006194 1.3e-39 166.4 111 82.9
Oeu001169.1 Olea europaea HOM05D005046 ORTHO05D006194 1.3e-39 166.4 104 90.4
vmacro08042 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 1.3e-39 166.4 107 84.1
Peaxi162Scf00228g00326 Petunia axillaris HOM05D005046 ORTHO05D006194 1.6e-39 166.0 111 83.8
Sed0009015 Sechium edule HOM05D005046 ORTHO05D006194 1.6e-39 166.0 109 80.7
MSTRG.24823 Avicennia marina HOM05D005046 ORTHO05D006194 2.8e-39 165.2 111 82.9
PGR004G2877 Punica granatum HOM05D005046 ORTHO05D006194 3.6e-39 164.9 112 83.9
Rhsim02G0003600 Rhododendron simsii HOM05D005046 ORTHO05D006194 3.6e-39 164.9 108 87.0
Gohir.A01G034600 Gossypium hirsutum HOM05D005046 ORTHO05D006194 4.8e-39 164.5 111 82.0
Thecc.04G301400 Theobroma cacao HOM05D005046 ORTHO05D006194 4.8e-39 164.5 111 82.9
Actinidia18456 Actinidia chinensis HOM05D005046 ORTHO05D006194 8.1e-39 163.7 111 83.8
Actinidia40381 Actinidia chinensis HOM05D005046 ORTHO05D006194 8.1e-39 163.7 111 83.8
Gorai.005G067500 Gossypium raimondii HOM05D005046 ORTHO05D006194 8.1e-39 163.7 111 82.0
Gohir.A02G054900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 1.1e-38 163.3 111 82.0
Zm00001eb211320 Zea mays HOM05D005046 ORTHO05D006194 1.1e-38 163.3 100 86.0
Duzib052G0826 Durio zibethinus HOM05D005046 ORTHO05D006194 4.0e-38 161.4 111 80.2
Nitab4.5_0000403g0120 Nicotiana tabacum HOM05D005046 ORTHO05D006194 4.0e-38 161.4 111 81.1
Os03g0832300 Oryza sativa ssp. japonica HOM05D005046 ORTHO05D006194 6.9e-38 160.6 103 82.5
RcHm_v2.0_Chr4g0425361 Rosa chinensis HOM05D005046 ORTHO05D006194 9.0e-38 160.2 107 83.2
FvH4_4g19820 Fragaria vesca HOM05D005046 ORTHO05D006194 1.5e-37 159.5 107 83.2
FAN07G0875 Fragaria x ananassa HOM05D005046 ORTHO05D006194 1.5e-37 159.5 107 83.2
FAN12G2964 Fragaria x ananassa HOM05D005046 ORTHO05D006194 1.5e-37 159.5 107 83.2
Actinidia13356 Actinidia chinensis HOM05D005046 ORTHO05D006194 2.6e-37 158.7 99 89.9
SalBow5G2652 Salvia bowleyana HOM05D005046 ORTHO05D006194 2.6e-37 158.7 109 78.9
CAN.G158.24 Capsicum annuum HOM05D005046 ORTHO05D006194 5.8e-37 157.5 111 80.2
Pp3c15_12430 Physcomitrium patens HOM05D005046 ORTHO05D006194 1.3e-36 156.4 110 80.0
THA.LOC104805014 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 2.2e-36 155.6 110 81.8
unitig_749.g13361 Utricularia gibba HOM05D005046 ORTHO05D006194 2.9e-36 155.2 105 77.1
PSO063G6303 Papaver somniferum HOM05D005046 ORTHO05D006194 3.8e-36 154.8 112 75.9
Potri.008G105000 Populus trichocarpa HOM05D005046 ORTHO05D006194 6.4e-36 154.1 112 81.2
PSO017G4602 Papaver somniferum HOM05D005046 ORTHO05D006194 1.9e-35 152.5 112 77.7
AagrBONN_evm.TU.Sc2ySwM_368.969 Anthoceros agrestis HOM05D005046 ORTHO05D006194 7.1e-35 150.6 109 76.1
Hund11979 Selenicereus undatus HOM05D005046 ORTHO05D006194 7.1e-35 150.6 111 76.6
Sp3g05540 Schrenkiella parvula HOM05D005046 ORTHO05D006194 2.1e-34 149.1 110 78.2
Aa31LG5G17170 Aethionema arabicum HOM05D005046 ORTHO05D006194 2.7e-34 148.7 110 77.3
A05p41430 Brassica napus HOM05D005046 ORTHO05D006194 2.7e-34 148.7 110 77.3
C05p60640 Brassica napus HOM05D005046 ORTHO05D006194 2.7e-34 148.7 110 77.3
BolC5t34723H Brassica oleracea HOM05D005046 ORTHO05D006194 2.7e-34 148.7 110 77.3
BraA05t22864Z Brassica rapa HOM05D005046 ORTHO05D006194 2.7e-34 148.7 110 77.3
Thhalv10021793m.g Eutrema salsugineum HOM05D005046 ORTHO05D006194 2.7e-34 148.7 110 76.4
Sabra08G0079200 Salix brachista HOM05D005046 ORTHO05D006194 2.7e-34 148.7 109 80.7
Sc25g0003240 Simmondsia chinensis HOM05D005046 ORTHO05D006194 2.7e-34 148.7 111 77.5
BNapus_Darmor_BZH_scaffold_118p00040 Brassica napus HOM05D005046 ORTHO05D006194 3.5e-34 148.3 110 77.3
BraA01t04428Z Brassica rapa HOM05D005046 ORTHO05D006194 6.0e-34 147.5 110 76.4
THA.LOC104818881 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 7.9e-34 147.1 110 76.4
CARHR081150 Cardamine hirsuta HOM05D005046 ORTHO05D006194 1.0e-33 146.7 110 76.4
AT3G06610 Arabidopsis thaliana HOM05D005046 ORTHO05D006194 1.3e-33 146.4 110 76.4
SMO304G0028 Selaginella moellendorffii HOM05D005046 ORTHO05D006194 3.9e-33 144.8 107 72.0
Carub.0003s0607 Capsella rubella HOM05D005046 ORTHO05D006194 6.7e-33 144.1 110 75.5
BcaC05g30546 Brassica carinata HOM05D005046 ORTHO05D006194 8.7e-33 143.7 111 76.6
BolC1t05599H Brassica oleracea HOM05D005046 ORTHO05D006194 8.7e-33 143.7 110 75.5
ECA240G2346 Erigeron canadensis HOM05D005046 ORTHO05D006194 8.7e-33 143.7 98 81.6
AL3G17660 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 3.3e-32 141.7 110 74.5
EL10Ac3g05511 Beta vulgaris HOM05D005046 ORTHO05D006194 4.3e-32 141.4 111 73.0
Ah.13g071840 Amaranthus hybridus HOM05D005046 ORTHO05D006194 7.4e-32 140.6 111 71.2
AUR62016211 Chenopodium quinoa HOM05D005046 ORTHO05D006194 7.4e-32 140.6 113 72.6
Nitab4.5_0000496g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 7.4e-32 140.6 111 72.1
vmacro15180 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 1.3e-31 139.8 175 55.4
AUR62039277 Chenopodium quinoa HOM05D005046 ORTHO05D006194 1.4e-30 136.3 111 70.3
AagrBONN_evm.TU.Sc2ySwM_368.976 Anthoceros agrestis HOM05D005046 ORTHO05D006194 3.1e-30 135.2 97 76.3
Nitab4.5_0002150g0070 Nicotiana tabacum HOM05D005046 ORTHO05D006194 5.3e-30 134.4 111 71.2
Mapoly0010s0169 Marchantia polymorpha HOM05D005046 ORTHO05D006194 6.9e-30 134.0 108 69.4
Nitab4.5_0002294g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 4.9e-28 127.9 111 69.4
CBR_g51449 Chara braunii HOM05D005046 ORTHO05D006194 1.1e-27 126.7 96 70.8
Cc03_g00760 Coffea canephora HOM05D005046 ORTHO05D006194 3.5e-26 121.7 83 84.3
Manes.03G205301 Manihot esculenta HOM05D005046 ORTHO05D006194 4.6e-26 121.3 102 69.6
TAR365G1002 Trochodendron aralioides HOM05D005046 ORTHO05D006194 1.6e-23 112.8 62 95.2
Gohir.D02G059900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 1.2e-21 106.7 68 86.8
BcaC09g47907 Brassica carinata HOM05D005046 ORTHO05D006194 3.4e-21 105.1 110 60.9
DCAR_026983 Daucus carota HOM05D005046 ORTHO05D006194 6.7e-17 90.9 61 83.6
Atru.chr4.2994 Acer truncatum HOM05D005046 ORTHO05D006194 7.4e-16 87.4 57 80.7
Lj5g0009192 Lotus japonicus HOM05D005046 ORTHO05D006194 2.2e-15 85.9 92 56.5
Eucgr.J02724 Eucalyptus grandis HOM05D005046 ORTHO05D006194 6.3e-15 84.3 50 90.0
Lj1g0019312 Lotus japonicus HOM05D005046 ORTHO05D006194 6.3e-15 84.3 109 48.6
SEGI_33495 Sequoiadendron giganteum HOM05D005046 ORTHO05D006194 5.3e-14 81.3 57 77.2
RcHm_v2.0_Chr5g0023271 Rosa chinensis HOM05D005046 ORTHO05D006194 2.0e-13 79.3 68 67.6
AL3G18870 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 2.5e-11 72.4 62 69.4
Atru.chr4.2993 Acer truncatum HOM05D005046 ORTHO05D006194 5.5e-11 71.2 44 84.1
Cre01.g041000 Chlamydomonas reinhardtii HOM05D005046 ORTHO05D006194 1.1e-06 57.0 110 38.2


User provided reference genes

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