Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1325 Trochodendron aralioides HOM05D005424 ORTHO05D006726 4.2e-279 964.1 520 100.0
Dinv12891 Davidia involucrata HOM05D005424 ORTHO05D006726 1.4e-170 603.6 514 68.5
GSVIVG01019675001 Vitis vinifera HOM05D005424 ORTHO05D006726 6.2e-166 588.2 523 66.5
Nn7g38300 Nelumbo nucifera HOM05D005424 ORTHO05D006726 1.4e-162 577.0 528 64.8
Dinv18754 Davidia involucrata HOM05D005424 ORTHO05D006726 5.1e-160 568.5 518 65.6
Thecc.03G218200 Theobroma cacao HOM05D005424 ORTHO05D006726 3.4e-156 555.8 518 65.4
Cfa011902 Carpinus fangiana HOM05D005424 ORTHO05D006726 1.9e-154 550.1 521 64.1
CiPaw.11G110500 Carya illinoinensis HOM05D005424 ORTHO05D006726 1.0e-152 544.3 517 63.8
Rhsim07G0076500 Rhododendron simsii HOM05D005424 ORTHO05D006726 3.7e-150 535.8 500 63.0
Potri.011G152600 Populus trichocarpa HOM05D005424 ORTHO05D006726 4.8e-150 535.4 514 62.8
COL.COLO4_10822 Corchorus olitorius HOM05D005424 ORTHO05D006726 4.1e-149 532.3 513 64.3
CSS0028831 Camellia sinensis var. sinensis HOM05D005424 ORTHO05D006726 1.5e-148 530.4 445 69.0
Potri.001G448900 Populus trichocarpa HOM05D005424 ORTHO05D006726 1.7e-147 526.9 516 62.2
Atru.chr9.1859 Acer truncatum HOM05D005424 ORTHO05D006726 1.4e-146 523.9 469 65.5
PSO063G2765 Papaver somniferum HOM05D005424 ORTHO05D006726 4.2e-146 522.3 520 60.8
Ciclev10018587m.g Citrus clementina HOM05D005424 ORTHO05D006726 7.2e-146 521.5 516 62.2
Gohir.A12G241300 Gossypium hirsutum HOM05D005424 ORTHO05D006726 2.1e-145 520.0 518 61.2
Gohir.D12G242600 Gossypium hirsutum HOM05D005424 ORTHO05D006726 2.7e-145 519.6 513 62.0
Prupe.5G132500 Prunus persica HOM05D005424 ORTHO05D006726 6.1e-145 518.5 516 61.0
Gorai.008G259800 Gossypium raimondii HOM05D005424 ORTHO05D006726 1.8e-144 516.9 513 61.8
Aqoxy7G00007 Aquilegia oxysepala HOM05D005424 ORTHO05D006726 6.7e-144 515.0 518 61.6
PSO782G1858 Papaver somniferum HOM05D005424 ORTHO05D006726 5.7e-143 511.9 520 60.2
Manes.01G055600 Manihot esculenta HOM05D005424 ORTHO05D006726 1.4e-141 507.3 519 59.9
Duzib205G0106 Durio zibethinus HOM05D005424 ORTHO05D006726 2.4e-141 506.5 518 61.8
QL02p027371 Quercus lobata HOM05D005424 ORTHO05D006726 3.1e-141 506.1 504 61.1
vmacro13840 Vaccinium macrocarpon HOM05D005424 ORTHO05D006726 3.1e-141 506.1 513 60.2
Sabra16G0303000 Salix brachista HOM05D005424 ORTHO05D006726 2.6e-140 503.1 507 61.5
Sabra11G0148200 Salix brachista HOM05D005424 ORTHO05D006726 8.5e-139 498.0 516 60.7
MBI12_g14812_MAGBIO Magnolia biondii HOM05D005424 ORTHO05D006726 2.5e-138 496.5 521 59.7
FvH4_5g10620 Fragaria vesca HOM05D005424 ORTHO05D006726 1.1e-133 481.1 517 57.8
FAN13G2865 Fragaria x ananassa HOM05D005424 ORTHO05D006726 2.4e-133 479.9 517 57.3
TWI81G0285 Tripterygium wilfordii HOM05D005424 ORTHO05D006726 2.9e-131 473.0 517 57.6
Duzib068G1314 Durio zibethinus HOM05D005424 ORTHO05D006726 4.2e-130 469.2 516 59.5
MD06G1121800 Malus domestica HOM05D005424 ORTHO05D006726 7.2e-130 468.4 513 58.1
FAN08G3416 Fragaria x ananassa HOM05D005424 ORTHO05D006726 1.2e-129 467.6 517 57.3
FAN18G4434 Fragaria x ananassa HOM05D005424 ORTHO05D006726 2.7e-129 466.5 542 55.2
RcHm_v2.0_Chr7g0187521 Rosa chinensis HOM05D005424 ORTHO05D006726 2.3e-128 463.4 487 59.8
Cpa.g.sc37.92 Carica papaya HOM05D005424 ORTHO05D006726 3.7e-126 456.1 502 58.8
Nitab4.5_0002520g0100 Nicotiana tabacum HOM05D005424 ORTHO05D006726 8.3e-126 454.9 508 55.5
Haze_09196 Corylus avellana HOM05D005424 ORTHO05D006726 7.7e-124 448.4 521 56.2
Nitab4.5_0003419g0090 Nicotiana tabacum HOM05D005424 ORTHO05D006726 2.2e-123 446.8 505 55.0
CANSAT21G2321 Cannabis sativa HOM05D005424 ORTHO05D006726 3.8e-123 446.0 484 56.8
Solyc08g083290.4 Solanum lycopersicum HOM05D005424 ORTHO05D006726 1.1e-122 444.5 510 53.9
Glyma.10G172500 Glycine max HOM05D005424 ORTHO05D006726 3.2e-122 443.0 510 56.3
VMungo0720G0206 Vigna mungo HOM05D005424 ORTHO05D006726 7.2e-122 441.8 518 55.8
Sopen08g031500 Solanum pennellii HOM05D005424 ORTHO05D006726 9.4e-122 441.4 510 53.5
Eucgr.D01670 Eucalyptus grandis HOM05D005424 ORTHO05D006726 1.0e-120 438.0 518 56.0
Lj2A154T41 Lonicera japonica HOM05D005424 ORTHO05D006726 9.8e-119 431.4 509 56.0
Glyma.20G217700 Glycine max HOM05D005424 ORTHO05D006726 1.2e-116 424.5 510 54.9
Lj5g0003487 Lotus japonicus HOM05D005424 ORTHO05D006726 2.7e-116 423.3 519 53.0
arahy.Tifrunner.gnm1.ann1.BAML4E Arachis hypogaea HOM05D005424 ORTHO05D006726 1.0e-115 421.4 510 54.5
CAN.G567.102 Capsicum annuum HOM05D005424 ORTHO05D006726 6.6e-115 418.7 480 53.8
Cc08_g16940 Coffea canephora HOM05D005424 ORTHO05D006726 6.6e-115 418.7 499 53.9
Ca_09953_v3 Cicer arietinum L. HOM05D005424 ORTHO05D006726 2.8e-113 413.3 508 53.1
MELO3C025037.2 Cucumis melo HOM05D005424 ORTHO05D006726 1.4e-112 411.0 500 53.8
ClCG08G001970 Citrullus lanatus HOM05D005424 ORTHO05D006726 2.3e-112 410.2 521 53.2
Sc01g0010800 Simmondsia chinensis HOM05D005424 ORTHO05D006726 6.8e-112 408.7 513 54.4
Lalb_Chr21g0311581 Lupinus albus HOM05D005424 ORTHO05D006726 1.2e-111 407.9 516 53.1
Medtr1g077940 Medicago truncatula HOM05D005424 ORTHO05D006726 1.2e-111 407.9 517 52.2
EL10Ac5g12404 Beta vulgaris HOM05D005424 ORTHO05D006726 4.4e-111 406.0 514 52.5
Phvul.L004801 Phaseolus vulgaris HOM05D005424 ORTHO05D006726 5.7e-111 405.6 538 52.0
Psat6g052720 Pisum sativum HOM05D005424 ORTHO05D006726 2.2e-110 403.7 509 52.1
Lalb_Chr21g0311601 Lupinus albus HOM05D005424 ORTHO05D006726 1.4e-109 401.0 518 52.5
CsaV3_6G002490 Cucumis sativus L. HOM05D005424 ORTHO05D006726 2.4e-109 400.2 505 53.3
Peaxi162Scf00074g00151 Petunia axillaris HOM05D005424 ORTHO05D006726 2.7e-108 396.7 427 57.1
PGR031G0320 Punica granatum HOM05D005424 ORTHO05D006726 1.8e-104 384.0 465 54.6
MSTRG.13701 Avicennia marina HOM05D005424 ORTHO05D006726 1.6e-100 370.9 442 53.8
Hund11337 Selenicereus undatus HOM05D005424 ORTHO05D006726 3.9e-99 366.3 507 50.9
THA.LOC104806458 Tarenaya hassleriana HOM05D005424 ORTHO05D006726 4.0e-96 356.3 459 54.5
Oeu010728.1 Olea europaea HOM05D005424 ORTHO05D006726 2.3e-91 340.5 381 56.2
THA.LOC104813063 Tarenaya hassleriana HOM05D005424 ORTHO05D006726 2.3e-91 340.5 523 49.1
AUR62019939 Chenopodium quinoa HOM05D005424 ORTHO05D006726 1.1e-90 338.2 502 47.4
Migut.E00727 Erythranthe guttata HOM05D005424 ORTHO05D006726 8.1e-89 332.0 517 47.6
AUR62007075 Chenopodium quinoa HOM05D005424 ORTHO05D006726 4.0e-88 329.7 471 48.6
TAR374G0493 Trochodendron aralioides HOM05D005424 ORTHO05D006726 1.1e-85 321.6 253 72.3
ECA233G6131 Erigeron canadensis HOM05D005424 ORTHO05D006726 4.6e-84 316.2 515 45.8
HanXRQChr07g0192271 Helianthus annuus HOM05D005424 ORTHO05D006726 6.6e-83 312.4 522 46.2
DCAR_009582 Daucus carota HOM05D005424 ORTHO05D006726 2.5e-82 310.5 488 48.0
Aqoxy8s003 Aquilegia oxysepala HOM05D005424 ORTHO05D006726 1.2e-81 308.1 327 59.0
SGA_v2.0_scaffold88G27243 Striga asiatica HOM05D005424 ORTHO05D006726 1.6e-81 307.8 444 50.5
Ah.07g198200 Amaranthus hybridus HOM05D005424 ORTHO05D006726 1.5e-79 301.2 508 43.3
SEGI_18929 Sequoiadendron giganteum HOM05D005424 ORTHO05D006726 8.4e-78 295.4 580 40.3
Sed0006250 Sechium edule HOM05D005424 ORTHO05D006726 3.9e-75 286.6 434 46.8
Lsat_1_v5_gn_6_11441 Lactuca sativa HOM05D005424 ORTHO05D006726 2.5e-74 283.9 471 45.4
Thhalv10006636m.g Eutrema salsugineum HOM05D005424 ORTHO05D006726 2.1e-73 280.8 365 54.2
CARHR032180 Cardamine hirsuta HOM05D005424 ORTHO05D006726 7.6e-71 272.3 466 46.6
AL1G47110 Arabidopsis lyrata HOM05D005424 ORTHO05D006726 1.3e-70 271.6 491 45.8
Carub.0001s3113 Capsella rubella HOM05D005424 ORTHO05D006726 1.6e-68 264.6 454 45.8
Ah.12g053330 Amaranthus hybridus HOM05D001091 ORTHO05D001020 8.7e-67 258.8 419 45.3
Aa31LG6G7470 Aethionema arabicum HOM05D005424 ORTHO05D006726 2.5e-66 257.3 423 46.8
AT1G32810 Arabidopsis thaliana HOM05D005424 ORTHO05D006726 1.8e-64 251.1 359 51.0
Sp1g28160 Schrenkiella parvula HOM05D005424 ORTHO05D006726 1.3e-62 245.0 467 43.9
unitig_699.g19549 Utricularia gibba HOM05D005424 ORTHO05D006726 4.2e-61 240.0 483 42.0
CDE11G1187 Ceratophyllum demersum HOM05D005424 ORTHO05D006726 9.3e-61 238.8 504 39.5
HPP92_001577 Vanilla planifolia HOM05D005424 ORTHO05D006726 1.6e-57 228.0 382 43.2
BcaB04g17977 Brassica carinata HOM05D005424 ORTHO05D006726 6.2e-57 226.1 452 42.3
DCAR_019998 Daucus carota HOM05D005424 ORTHO05D006726 1.9e-53 214.5 355 46.2
PGSC0003DMG402012227 Solanum tuberosum HOM05D005424 ORTHO05D006726 4.2e-53 213.4 322 46.6
BolC8t47971H Brassica oleracea HOM05D005424 ORTHO05D006726 1.2e-52 211.8 376 44.1
BcaC07g37610 Brassica carinata HOM05D005424 ORTHO05D006726 7.9e-52 209.1 376 43.9
BraA08t32921Z Brassica rapa HOM05D005424 ORTHO05D006726 7.9e-52 209.1 312 47.1
A08p09200 Brassica napus HOM05D005424 ORTHO05D006726 1.0e-51 208.8 438 40.9
TPR.G34809 Trifolium pratense HOM05D005424 ORTHO05D006726 4.2e-45 186.8 331 43.2
TPR.G34808 Trifolium pratense HOM05D005424 ORTHO05D006726 9.3e-45 185.7 150 69.3
SHI06919 Sapria himalayana HOM05D005424 ORTHO05D006726 1.6e-44 184.9 275 46.2
Os04g0221600 Oryza sativa ssp. japonica HOM05D005424 ORTHO05D006726 2.7e-44 184.1 496 34.9
ATR0078G022 Amborella trichopoda HOM05D005424 ORTHO05D006726 6.5e-38 162.9 486 35.2
TAR374G0151 Trochodendron aralioides HOM05D005424 ORTHO05D006726 7.2e-37 159.5 149 63.8
Oeu038526.1 Olea europaea HOM05D000700 ORTHO05D000397 2.6e-31 141.0 323 37.8
Mapoly0057s0069 Marchantia polymorpha HOM05D005424 ORTHO05D006726 3.4e-31 140.6 479 32.2
AagrBONN_evm.TU.Sc2ySwM_117.701 Anthoceros agrestis HOM05D005424 ORTHO05D006726 3.8e-30 137.1 578 30.3
PGSC0003DMG401012227 Solanum tuberosum HOM05D005424 ORTHO05D006726 3.3e-18 97.4 97 56.7
SEGI_29779 Sequoiadendron giganteum HOM05D005424 ORTHO05D006726 2.2e-17 94.7 203 37.9
TAR636G2935 Trochodendron aralioides HOM05D005424 ORTHO05D006726 3.5e-07 60.8 45 75.6
TPR.G31171 Trifolium pratense HOM05D005424 ORTHO05D006726 6.5e-06 56.6 50 60.0


User provided reference genes

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