Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1323 Trochodendron aralioides HOM05D005292 ORTHO05D006473 1.0e-204 716.5 352 100.0
GSVIVG01004916001 Vitis vinifera HOM05D005292 ORTHO05D006473 6.5e-167 590.9 350 83.1
Cfa012803 Carpinus fangiana HOM05D005292 ORTHO05D006473 2.3e-164 582.4 345 82.6
QL12p014915 Quercus lobata HOM05D005292 ORTHO05D006473 1.2e-163 580.1 344 82.8
Nn1g01261 Nelumbo nucifera HOM05D005292 ORTHO05D006473 1.5e-163 579.7 346 82.1
CiPaw.11G147800 Carya illinoinensis HOM05D005292 ORTHO05D006473 5.7e-163 577.8 350 82.3
Atru.chr9.1428 Acer truncatum HOM05D005292 ORTHO05D006473 4.5e-160 568.2 349 79.9
CANSAT80G2034 Cannabis sativa HOM05D005292 ORTHO05D006473 1.7e-159 566.2 345 81.2
Cpa.g.sc29.95 Carica papaya HOM05D005292 ORTHO05D006473 1.5e-158 563.1 350 80.0
Ciclev10020454m.g Citrus clementina HOM05D005292 ORTHO05D006473 1.9e-158 562.8 344 79.9
Lj4g0005126 Lotus japonicus HOM05D005292 ORTHO05D006473 1.6e-157 559.7 344 80.5
CiPaw.12G105300 Carya illinoinensis HOM05D005292 ORTHO05D006473 2.1e-157 559.3 343 81.3
Duzib084G0213 Durio zibethinus HOM05D005292 ORTHO05D006473 2.7e-157 558.9 344 79.1
Ca_12278_v3 Cicer arietinum L. HOM05D005292 ORTHO05D006473 4.7e-157 558.1 352 78.7
Thecc.03G261400 Theobroma cacao HOM05D005292 ORTHO05D006473 3.0e-156 555.4 344 79.4
COL.COLO4_31983 Corchorus olitorius HOM05D005292 ORTHO05D006473 1.5e-155 553.1 344 79.4
Potri.001G118000 Populus trichocarpa HOM05D005292 ORTHO05D006473 1.5e-155 553.1 346 78.9
MD04G1079900 Malus domestica HOM05D005292 ORTHO05D006473 1.7e-154 549.7 346 78.9
Prupe.5G079200 Prunus persica HOM05D005292 ORTHO05D006473 1.7e-154 549.7 348 79.3
TPR.G37684 Trifolium pratense HOM05D005292 ORTHO05D006473 1.7e-154 549.7 352 77.8
Oeu016513.1 Olea europaea HOM05D005292 ORTHO05D006473 8.3e-154 547.4 347 79.0
Dinv21573 Davidia involucrata HOM05D005292 ORTHO05D006473 4.1e-153 545.0 344 79.1
Gohir.D12G223000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 5.4e-153 544.7 344 78.2
TWI15G0139 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 1.2e-152 543.5 349 77.1
Glyma.05G052500 Glycine max HOM05D005292 ORTHO05D006473 1.6e-152 543.1 345 78.6
Glyma.17G134700 Glycine max HOM05D005292 ORTHO05D006473 1.6e-152 543.1 352 77.8
arahy.Tifrunner.gnm1.ann1.VS5X7Y Arachis hypogaea HOM05D005292 ORTHO05D006473 2.0e-152 542.7 349 77.9
Gohir.A03G012000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 2.0e-152 542.7 344 77.6
Manes.02G033900 Manihot esculenta HOM05D005292 ORTHO05D006473 2.0e-152 542.7 348 79.0
arahy.Tifrunner.gnm1.ann1.YRMJ3W Arachis hypogaea HOM05D005292 ORTHO05D006473 2.7e-152 542.3 340 79.7
Lalb_Chr05g0225431 Lupinus albus HOM05D005292 ORTHO05D006473 4.5e-152 541.6 344 79.1
Gohir.D03G157800 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.7e-151 539.7 344 77.3
Phvul.003G214500 Phaseolus vulgaris HOM05D005292 ORTHO05D006473 1.7e-151 539.7 346 78.6
VMungo1215G1740 Vigna mungo HOM05D005292 ORTHO05D006473 1.7e-151 539.7 344 78.5
Cc08_g13210 Coffea canephora HOM05D005292 ORTHO05D006473 1.1e-150 537.0 344 77.9
Gorai.003G166300 Gossypium raimondii HOM05D005292 ORTHO05D006473 2.5e-150 535.8 344 77.0
Sed0004099 Sechium edule HOM05D005292 ORTHO05D006473 2.5e-150 535.8 344 76.7
Gorai.008G239300 Gossypium raimondii HOM05D005292 ORTHO05D006473 4.2e-150 535.0 369 73.4
Psat4g068120 Pisum sativum HOM05D005292 ORTHO05D006473 4.2e-150 535.0 342 78.7
CAN.G630.87 Capsicum annuum HOM05D005292 ORTHO05D006473 2.1e-149 532.7 350 76.3
Hma1.2p1_0367F.1_g137040 Hydrangea macrophylla HOM05D005292 ORTHO05D006473 2.1e-149 532.7 342 77.2
Medtr4g102260 Medicago truncatula HOM05D005292 ORTHO05D006473 2.1e-149 532.7 348 77.0
Potri.003G114900 Populus trichocarpa HOM05D005292 ORTHO05D006473 3.6e-149 531.9 351 75.5
PGR031G2306 Punica granatum HOM05D005292 ORTHO05D006473 8.0e-149 530.8 311 83.0
Eucgr.D01991 Eucalyptus grandis HOM05D005292 ORTHO05D006473 1.0e-148 530.4 342 77.2
MSTRG.12063 Avicennia marina HOM05D005292 ORTHO05D006473 1.4e-148 530.0 349 75.4
Gohir.A11G020400 Gossypium hirsutum HOM05D005292 ORTHO05D006473 3.0e-148 528.9 355 75.2
Peaxi162Scf00271g00021 Petunia axillaris HOM05D005292 ORTHO05D006473 4.0e-148 528.5 346 76.3
Aqoxy7G00654 Aquilegia oxysepala HOM05D005292 ORTHO05D006473 1.5e-147 526.6 342 77.8
CSS0004035 Camellia sinensis var. sinensis HOM05D005292 ORTHO05D006473 2.6e-147 525.8 357 74.8
PSO782G2032 Papaver somniferum HOM05D005292 ORTHO05D006473 5.7e-147 524.6 316 81.6
RcHm_v2.0_Chr7g0201621 Rosa chinensis HOM05D005292 ORTHO05D006473 7.5e-147 524.2 289 87.9
Sopen08g027820 Solanum pennellii HOM05D005292 ORTHO05D006473 1.3e-146 523.5 345 75.4
Actinidia02093 Actinidia chinensis HOM05D005292 ORTHO05D006473 1.7e-146 523.1 285 88.4
MBI12_g31646_MAGBIO Magnolia biondii HOM05D005292 ORTHO05D006473 2.2e-146 522.7 353 74.5
Solyc08g079450.3 Solanum lycopersicum HOM05D005292 ORTHO05D006473 2.2e-146 522.7 345 75.4
Lj8A255T56 Lonicera japonica HOM05D005292 ORTHO05D006473 4.9e-146 521.5 353 74.8
Nitab4.5_0003534g0020 Nicotiana tabacum HOM05D005292 ORTHO05D006473 4.9e-146 521.5 346 75.7
Gorai.007G021400 Gossypium raimondii HOM05D005292 ORTHO05D006473 1.1e-145 520.4 356 74.7
Dinv39082 Davidia involucrata HOM05D005292 ORTHO05D006473 1.8e-145 519.6 345 76.5
CsaV3_5G003780 Cucumis sativus L. HOM05D005292 ORTHO05D006473 5.4e-145 518.1 345 75.4
THA.LOC104813867 Tarenaya hassleriana HOM05D005292 ORTHO05D006473 5.4e-145 518.1 295 83.4
FAN04G0899 Fragaria x ananassa HOM05D005292 ORTHO05D006473 7.0e-145 517.7 289 87.2
FAN13G3324 Fragaria x ananassa HOM05D005292 ORTHO05D006473 7.0e-145 517.7 289 87.5
FAN08G1347 Fragaria x ananassa HOM05D005292 ORTHO05D006473 9.2e-145 517.3 289 87.2
FAN18G3339 Fragaria x ananassa HOM05D005292 ORTHO05D006473 9.2e-145 517.3 289 87.2
Hund14648 Selenicereus undatus HOM05D005292 ORTHO05D006473 5.9e-144 514.6 317 80.1
Gohir.D11G020100 Gossypium hirsutum HOM05D005292 ORTHO05D006473 7.8e-144 514.2 349 74.2
PSO478G4449 Papaver somniferum HOM05D005292 ORTHO05D006473 1.7e-143 513.1 316 80.4
AL6G47090 Arabidopsis lyrata HOM05D005292 ORTHO05D006473 2.9e-143 512.3 292 82.9
Thhalv10028717m.g Eutrema salsugineum HOM05D005292 ORTHO05D006473 2.9e-143 512.3 296 82.4
EL10Ac5g12610 Beta vulgaris HOM05D005292 ORTHO05D006473 5.0e-143 511.5 351 72.1
Sc22g0000600 Simmondsia chinensis HOM05D005292 ORTHO05D006473 5.0e-143 511.5 315 79.4
PGSC0003DMG400003959 Solanum tuberosum HOM05D005292 ORTHO05D006473 5.0e-143 511.5 346 74.6
ECA233G3282 Erigeron canadensis HOM05D005292 ORTHO05D006473 6.6e-143 511.1 294 84.4
CARHR254020 Cardamine hirsuta HOM05D005292 ORTHO05D006473 2.5e-142 509.2 294 82.3
CDE09G1063 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 5.6e-142 508.1 354 70.6
BcaC01g04601 Brassica carinata HOM05D005292 ORTHO05D006473 1.6e-141 506.5 289 83.0
A03p29600 Brassica napus HOM05D005292 ORTHO05D006473 1.6e-141 506.5 289 83.0
BraA03t12155Z Brassica rapa HOM05D005292 ORTHO05D006473 1.6e-141 506.5 289 83.0
BcaB01g02654 Brassica carinata HOM05D005292 ORTHO05D006473 3.6e-141 505.4 289 82.7
Carub.0006s3135 Capsella rubella HOM05D005292 ORTHO05D006473 4.7e-141 505.0 305 78.7
Sp6g05330 Schrenkiella parvula HOM05D005292 ORTHO05D006473 4.7e-141 505.0 305 80.0
HanXRQChr07g0188671 Helianthus annuus HOM05D005292 ORTHO05D006473 1.8e-140 503.1 347 73.8
C03p35880 Brassica napus HOM05D005292 ORTHO05D006473 4.0e-140 501.9 290 82.8
BolC3t15896H Brassica oleracea HOM05D005292 ORTHO05D006473 4.0e-140 501.9 290 82.8
AT4G12230 Arabidopsis thaliana HOM05D005292 ORTHO05D006473 5.2e-140 501.5 356 71.1
Haze_08610 Corylus avellana HOM05D005292 ORTHO05D006473 5.2e-140 501.5 405 66.4
AUR62010507 Chenopodium quinoa HOM05D005292 ORTHO05D006473 8.9e-140 500.7 332 72.6
Gohir.A12G220700 Gossypium hirsutum HOM05D005292 ORTHO05D006473 3.4e-139 498.8 330 75.2
SGA_v2.0_scaffold120G32820 Striga asiatica HOM05D005292 ORTHO05D006473 4.4e-139 498.4 375 69.1
Migut.A00832 Erythranthe guttata HOM05D005292 ORTHO05D006473 5.8e-139 498.0 283 83.4
HanXRQChr02g0046251 Helianthus annuus HOM05D005292 ORTHO05D006473 1.3e-138 496.9 310 78.1
Nitab4.5_0007591g0040 Nicotiana tabacum HOM05D005292 ORTHO05D006473 6.4e-138 494.6 287 82.2
Aa31LG9G10310 Aethionema arabicum HOM05D005292 ORTHO05D006473 1.1e-137 493.8 321 75.1
Sabra01G0090700 Salix brachista HOM05D005292 ORTHO05D006473 1.1e-137 493.8 442 60.6
Os10g0169800 Oryza sativa ssp. japonica HOM05D005292 ORTHO05D006473 4.1e-137 491.9 335 71.0
DCAR_006803 Daucus carota HOM05D005292 ORTHO05D006473 7.0e-137 491.1 352 71.0
ClCG01G003660 Citrullus lanatus HOM05D005292 ORTHO05D006473 2.7e-136 489.2 355 71.0
Nn4g26373 Nelumbo nucifera HOM05D005292 ORTHO05D006473 7.8e-136 487.6 349 71.3
Ah.12g058260 Amaranthus hybridus HOM05D005292 ORTHO05D006473 3.9e-135 485.3 353 70.0
SalBow1G6483 Salvia bowleyana HOM05D005292 ORTHO05D006473 3.9e-135 485.3 379 66.2
Zm00001eb026990 Zea mays HOM05D005292 ORTHO05D006473 3.6e-133 478.8 302 75.2
vmacro14043 Vaccinium macrocarpon HOM05D005292 ORTHO05D006473 1.4e-132 476.9 331 72.8
Ah.02g116220 Amaranthus hybridus HOM05D005292 ORTHO05D006473 3.1e-132 475.7 282 79.4
Lsat_1_v5_gn_6_9841 Lactuca sativa HOM05D005292 ORTHO05D006473 1.6e-128 463.4 329 71.4
ATR0757G031 Amborella trichopoda HOM05D005292 ORTHO05D006473 4.6e-128 461.8 267 83.5
AUR62017394 Chenopodium quinoa HOM05D005292 ORTHO05D006473 1.3e-127 460.3 312 71.2
unitig_744.g24320 Utricularia gibba HOM05D005292 ORTHO05D006473 1.3e-127 460.3 371 64.2
CDE11G0205 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 8.6e-127 457.6 330 69.4
TWI15G0397 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 5.6e-126 454.9 349 68.5
HPP92_014608 Vanilla planifolia HOM05D005292 ORTHO05D006473 5.4e-121 438.3 276 76.1
SEGI_16146 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 2.4e-116 422.9 306 64.4
SMO223G0031 Selaginella moellendorffii HOM05D005292 ORTHO05D006473 3.3e-110 402.5 274 67.9
Pp3c6_20320 Physcomitrium patens HOM05D005292 ORTHO05D006473 5.6e-110 401.7 279 67.7
Sabra03G0079600 Salix brachista HOM05D005292 ORTHO05D006473 1.1e-108 397.5 219 87.2
FvH4_5g00640 Fragaria vesca HOM05D005292 ORTHO05D006473 3.1e-108 396.0 225 87.1
Rhsim07G0101700 Rhododendron simsii HOM05D005292 ORTHO05D006473 5.3e-108 395.2 358 59.5
Mapoly0066s0051 Marchantia polymorpha HOM05D005292 ORTHO05D006473 2.0e-107 393.3 272 67.3
AagrBONN_evm.TU.Sc2ySwM_368.248 Anthoceros agrestis HOM05D005292 ORTHO05D006473 2.4e-105 386.3 321 60.1
Duzib205G1434 Durio zibethinus HOM05D005292 ORTHO05D006473 3.6e-101 372.5 344 60.2
TAR629G1108 Trochodendron aralioides HOM05D005292 ORTHO05D006473 6.9e-100 368.2 183 93.4
Oeu022319.3 Olea europaea HOM05D005292 ORTHO05D006473 7.9e-96 354.8 364 55.5
Actinidia14462 Actinidia chinensis HOM05D005292 ORTHO05D006473 1.3e-90 337.4 343 55.7
Aa31LG11G5120 Aethionema arabicum HOM05D005292 ORTHO05D006473 2.7e-72 276.6 155 80.6
TAR636G3691 Trochodendron aralioides HOM05D005292 ORTHO05D006473 7.9e-72 275.0 135 100.0
MD06G1074900 Malus domestica HOM05D005292 ORTHO05D006473 1.1e-70 271.2 147 84.4
Dinv37766 Davidia involucrata HOM05D005292 ORTHO05D006473 2.2e-69 266.9 203 70.0
Lsat_1_v5_gn_8_156781 Lactuca sativa HOM05D005292 ORTHO05D006473 4.8e-45 186.0 173 60.7
MELO3C005579.2 Cucumis melo HOM05D005292 ORTHO05D006473 1.4e-44 184.5 163 63.2
Lsat_1_v5_gn_8_88300 Lactuca sativa HOM05D005292 ORTHO05D006473 9.5e-41 171.8 238 43.3
Lsat_1_v5_gn_2_99060 Lactuca sativa HOM05D005292 ORTHO05D006473 4.7e-40 169.5 120 73.3
SEGI_25328 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.4e-36 157.9 94 70.2
Lsat_1_v5_gn_8_99640 Lactuca sativa HOM05D005292 ORTHO05D006473 1.9e-33 147.5 161 52.8
SEGI_08273 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 2.2e-29 134.0 84 77.4
Glyma.05G052200 Glycine max HOM05D005292 ORTHO05D006473 6.4e-29 132.5 138 55.1
Cc08_g13200 Coffea canephora HOM05D005292 ORTHO05D006473 1.2e-27 128.3 66 86.4
CDE11G1060 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 1.6e-27 127.9 66 83.3
MD06G1074800 Malus domestica HOM05D005292 ORTHO05D006473 1.1e-25 121.7 72 86.1
SEGI_15988 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.2e-22 111.7 65 78.5
TWI81G0363 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 1.3e-18 98.2 71 71.8
Eucgr.C02046 Eucalyptus grandis HOM05D005292 ORTHO05D006473 3.6e-16 90.1 66 69.7
vmacro17465 Vaccinium macrocarpon HOM05D002883 ORTHO05D003116 2.0e-14 84.3 42 85.7
Peaxi162Scf00102g01237 Petunia axillaris HOM05D000023 ORTHO05D013611 1.2e-06 58.5 41 63.4


User provided reference genes

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