Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1150 Trochodendron aralioides HOM05D004766 ORTHO05D006159 1.1e-183 646.4 305 100.0
TAR633G2654 Trochodendron aralioides HOM05D004766 ORTHO05D006159 1.6e-137 493.0 305 77.7
Nn2g10346 Nelumbo nucifera HOM05D004766 ORTHO05D006159 2.5e-122 442.6 306 70.9
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 1.0e-120 437.2 305 67.5
Actinidia31615 Actinidia chinensis HOM05D004766 ORTHO05D006159 8.8e-120 434.1 304 67.1
CSS0019433 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 1.5e-119 433.3 308 67.9
Nn5g26881 Nelumbo nucifera HOM05D004766 ORTHO05D006159 2.6e-119 432.6 305 71.1
Dinv26060 Davidia involucrata HOM05D004766 ORTHO05D006159 3.4e-119 432.2 306 69.0
Actinidia33880 Actinidia chinensis HOM05D004766 ORTHO05D006159 4.3e-114 415.2 300 65.3
GSVIVG01032703001 Vitis vinifera HOM05D004766 ORTHO05D006159 9.5e-114 414.1 308 65.3
Hma1.2p1_2838F.1_g329290 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 1.4e-112 410.2 304 64.5
QL08p064773 Quercus lobata HOM05D004766 ORTHO05D006159 3.4e-111 405.6 311 63.3
RcHm_v2.0_Chr1g0372121 Rosa chinensis HOM05D004766 ORTHO05D006159 1.7e-110 403.3 304 65.8
MSTRG.178 Avicennia marina HOM05D004766 ORTHO05D006159 6.4e-110 401.4 304 60.5
FvH4_7g25850 Fragaria vesca HOM05D004766 ORTHO05D006159 8.3e-110 401.0 304 64.8
MD07G1233000 Malus domestica HOM05D004766 ORTHO05D006159 8.3e-110 401.0 304 63.5
Nitab4.5_0003695g0010 Nicotiana tabacum HOM05D004766 ORTHO05D006159 8.3e-110 401.0 305 60.7
CAN.G169.5 Capsicum annuum HOM05D004766 ORTHO05D006159 1.4e-109 400.2 306 61.1
FAN06G4224 Fragaria x ananassa HOM05D004766 ORTHO05D006159 3.2e-109 399.1 304 64.5
FAN10G2197 Fragaria x ananassa HOM05D004766 ORTHO05D006159 1.6e-108 396.7 304 64.5
Actinidia29749 Actinidia chinensis HOM05D004766 ORTHO05D006159 3.5e-108 395.6 280 66.8
Aqoxy4G02363 Aquilegia oxysepala HOM05D004766 ORTHO05D006159 3.5e-108 395.6 306 63.1
Duzib128G1614 Durio zibethinus HOM05D004766 ORTHO05D006159 3.5e-108 395.6 308 60.4
FAN03G3241 Fragaria x ananassa HOM05D004766 ORTHO05D006159 4.6e-108 395.2 299 65.2
vmacro09973 Vaccinium macrocarpon HOM05D004766 ORTHO05D006159 1.3e-107 393.7 338 58.3
Rhsim09G0184400 Rhododendron simsii HOM05D004766 ORTHO05D006159 2.3e-107 392.9 306 63.4
MBI15_g35105_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D006159 3.0e-107 392.5 320 61.9
Nitab4.5_0000109g0520 Nicotiana tabacum HOM05D004766 ORTHO05D006159 3.9e-107 392.1 306 60.1
Lj8C56T7 Lonicera japonica HOM05D004766 ORTHO05D006159 6.6e-107 391.3 305 61.6
Ciclev10033572m.g Citrus clementina HOM05D004766 ORTHO05D006159 8.6e-107 391.0 304 63.5
Migut.F01258 Erythranthe guttata HOM05D004766 ORTHO05D006159 8.6e-107 391.0 303 60.7
Cc02_g05520 Coffea canephora HOM05D004766 ORTHO05D006159 2.5e-106 389.4 303 62.4
Haze_17351 Corylus avellana HOM05D004766 ORTHO05D006159 4.3e-106 388.7 331 59.8
Manes.07G137600 Manihot esculenta HOM05D004766 ORTHO05D006159 2.1e-105 386.3 304 60.9
Potri.019G056200 Populus trichocarpa HOM05D004766 ORTHO05D006159 2.1e-105 386.3 305 61.0
PGR142G0390 Punica granatum HOM05D004766 ORTHO05D006159 2.1e-105 386.3 304 59.5
Gorai.013G008100 Gossypium raimondii HOM05D004766 ORTHO05D006159 4.7e-105 385.2 309 61.2
Gohir.D13G007700 Gossypium hirsutum HOM05D004766 ORTHO05D006159 8.0e-105 384.4 309 61.2
Gohir.A13G007600 Gossypium hirsutum HOM05D004766 ORTHO05D006159 1.4e-104 383.6 309 61.5
TWI09G0270 Tripterygium wilfordii HOM05D004766 ORTHO05D006159 1.2e-103 380.6 305 61.6
Atru.chr12.159 Acer truncatum HOM05D004766 ORTHO05D006159 9.8e-103 377.5 306 59.2
CiPaw.01G306100 Carya illinoinensis HOM05D004766 ORTHO05D006159 3.7e-102 375.6 306 61.1
Sabra19G0071700 Salix brachista HOM05D004766 ORTHO05D006159 3.7e-102 375.6 305 60.0
Oeu054426.2 Olea europaea HOM05D004766 ORTHO05D006159 8.3e-102 374.4 376 51.6
Prupe.2G263500 Prunus persica HOM05D004766 ORTHO05D006159 8.3e-102 374.4 282 63.8
Cpa.g.sc19.83 Carica papaya HOM05D004766 ORTHO05D006159 5.4e-101 371.7 304 59.2
SGA_v2.0_scaffold275G46605 Striga asiatica HOM05D004766 ORTHO05D006159 4.6e-100 368.6 305 57.0
Sc10g0002920 Simmondsia chinensis HOM05D004766 ORTHO05D006159 5.0e-99 365.2 306 58.8
arahy.Tifrunner.gnm1.ann1.GHXG56 Arachis hypogaea HOM05D004766 ORTHO05D006159 1.9e-98 363.2 306 59.2
EL10Ac2g04254 Beta vulgaris HOM05D004766 ORTHO05D006159 1.9e-98 363.2 304 57.6
Thecc.10G183900 Theobroma cacao HOM05D004766 ORTHO05D006159 3.3e-98 362.5 306 57.8
CANSAT56G1075 Cannabis sativa HOM05D004766 ORTHO05D006159 5.6e-98 361.7 305 59.7
PSO339G1431 Papaver somniferum HOM05D004766 ORTHO05D006159 9.5e-98 360.9 313 56.5
PSO384G4442 Papaver somniferum HOM05D004766 ORTHO05D006159 9.5e-98 360.9 313 57.5
arahy.Tifrunner.gnm1.ann1.4BS23W Arachis hypogaea HOM05D004766 ORTHO05D006159 6.2e-97 358.2 306 58.8
FAN01G2723 Fragaria x ananassa HOM05D004766 ORTHO05D006159 1.4e-96 357.1 304 59.9
SalBow5G3937 Salvia bowleyana HOM05D004766 ORTHO05D006159 1.4e-96 357.1 331 53.8
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 1.4e-96 357.1 305 58.0
Ca_16870_v3 Cicer arietinum L. HOM05D004766 ORTHO05D006159 1.8e-96 356.7 306 59.5
ClCG11G005730 Citrullus lanatus HOM05D004766 ORTHO05D006159 1.8e-96 356.7 300 59.7
MELO3C020001.2 Cucumis melo HOM05D004766 ORTHO05D006159 2.3e-96 356.3 300 57.3
Eucgr.J00130 Eucalyptus grandis HOM05D004766 ORTHO05D006159 6.8e-96 354.8 304 58.2
PGSC0003DMG400024309 Solanum tuberosum HOM05D004766 ORTHO05D006159 6.8e-96 354.8 307 57.0
THA.LOC104812375 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 8.9e-96 354.4 303 57.8
Ah.16g104280 Amaranthus hybridus HOM05D004766 ORTHO05D006159 1.2e-95 354.0 304 56.9
DCAR_010519 Daucus carota HOM05D004766 ORTHO05D006159 1.2e-95 354.0 303 55.8
Medtr3g094070 Medicago truncatula HOM05D004766 ORTHO05D006159 1.9e-93 346.7 306 55.9
HanXRQChr08g0222571 Helianthus annuus HOM05D004766 ORTHO05D006159 7.1e-93 344.7 304 54.9
AUR62031489 Chenopodium quinoa HOM05D004766 ORTHO05D006159 1.2e-92 344.0 306 57.5
TPR.G16138 Trifolium pratense HOM05D004766 ORTHO05D006159 1.2e-92 344.0 326 53.4
CsaV3_6G002240 Cucumis sativus L. HOM05D004766 ORTHO05D006159 4.6e-92 342.0 300 55.3
Phvul.009G142700 Phaseolus vulgaris HOM05D004766 ORTHO05D006159 1.7e-91 340.1 302 54.3
ECA233G3027 Erigeron canadensis HOM05D004766 ORTHO05D006159 3.9e-91 339.0 305 54.8
Glyma.04G222000 Glycine max HOM05D004766 ORTHO05D006159 8.6e-91 337.8 304 55.9
Lalb_Chr11g0067831 Lupinus albus HOM05D004766 ORTHO05D006159 1.1e-90 337.4 310 55.2
VMungo1309G2839 Vigna mungo HOM05D004766 ORTHO05D006159 2.5e-90 336.3 304 54.3
Glyma.06G143400 Glycine max HOM05D004766 ORTHO05D006159 3.3e-90 335.9 304 55.3
THA.LOC104803295 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 8.1e-89 331.3 303 56.1
AUR62012360 Chenopodium quinoa HOM05D004766 ORTHO05D006159 5.2e-88 328.6 304 54.6
HanXRQChr17g0560771 Helianthus annuus HOM05D004766 ORTHO05D006159 5.2e-88 328.6 304 52.0
Sed0017451 Sechium edule HOM05D004766 ORTHO05D006159 4.4e-87 325.5 299 55.5
Thhalv10016414m.g Eutrema salsugineum HOM05D004766 ORTHO05D006159 2.2e-86 323.2 300 54.7
AT2G40550 Arabidopsis thaliana HOM05D004766 ORTHO05D006159 3.8e-86 322.4 300 55.0
BcaC02g07319 Brassica carinata HOM05D004766 ORTHO05D006159 4.9e-86 322.0 302 53.3
Sp4g22880 Schrenkiella parvula HOM05D004766 ORTHO05D006159 1.1e-85 320.9 302 53.6
SpUn0061_0030 Schrenkiella parvula HOM05D004766 ORTHO05D006159 1.1e-85 320.9 302 53.6
AL4G38400 Arabidopsis lyrata HOM05D004766 ORTHO05D006159 2.4e-85 319.7 300 54.0
BcaB06g29150 Brassica carinata HOM05D004766 ORTHO05D006159 1.2e-84 317.4 300 52.3
Lsat_1_v5_gn_8_13521 Lactuca sativa HOM05D004766 ORTHO05D006159 1.6e-84 317.0 305 53.1
Aa31LG10G11180 Aethionema arabicum HOM05D004766 ORTHO05D006159 6.0e-84 315.1 282 53.9
Psat5g069120 Pisum sativum HOM05D004766 ORTHO05D006159 6.0e-84 315.1 311 52.4
Carub.0004s2277 Capsella rubella HOM05D004766 ORTHO05D006159 1.3e-83 313.9 301 52.8
CARHR135660 Cardamine hirsuta HOM05D004766 ORTHO05D006159 2.3e-83 313.2 304 53.6
Lalb_Chr08g0239111 Lupinus albus HOM05D004766 ORTHO05D006159 2.3e-83 313.2 312 53.5
ATR0681G084 Amborella trichopoda HOM05D004766 ORTHO05D006159 4.4e-79 298.9 305 50.5
Lj1g0018162 Lotus japonicus HOM05D004766 ORTHO05D006159 5.8e-79 298.5 305 49.5
A04p31000 Brassica napus HOM05D004766 ORTHO05D006159 2.4e-77 293.1 283 52.3
Os01g0166800 Oryza sativa ssp. japonica HOM05D004766 ORTHO05D006159 2.7e-76 289.7 316 48.1
C04p68390 Brassica napus HOM05D004766 ORTHO05D006159 4.6e-76 288.9 283 51.2
HPP92_018094 Vanilla planifolia HOM05D004766 ORTHO05D006159 3.9e-75 285.8 305 51.8
Zm00001eb123270 Zea mays HOM05D004766 ORTHO05D006159 6.9e-72 275.0 317 45.7
Cfa001212 Carpinus fangiana HOM05D004766 ORTHO05D006159 4.5e-71 272.3 213 62.9
SEGI_19414 Sequoiadendron giganteum HOM05D004766 ORTHO05D006159 3.9e-67 259.2 308 43.5
COL.COLO4_19454 Corchorus olitorius HOM05D004766 ORTHO05D006159 2.1e-65 253.4 226 55.8
CDE12G0671 Ceratophyllum demersum HOM05D004766 ORTHO05D006159 1.5e-63 247.3 305 46.2
Sopen06g015640 Solanum pennellii HOM05D000002 ORTHO05D000001 2.6e-63 246.5 270 50.4
unitig_90.g27573 Utricularia gibba HOM05D004766 ORTHO05D006159 2.2e-62 243.4 331 40.5
Peaxi162Scf00739g00019 Petunia axillaris HOM05D004766 ORTHO05D006159 2.4e-61 240.0 284 45.4
C04p02090 Brassica napus HOM05D004766 ORTHO05D006159 6.2e-57 225.3 245 48.6
MD01G1166000 Malus domestica HOM05D004766 ORTHO05D006159 1.4e-56 224.2 131 73.3
Pp3c21_8640 Physcomitrium patens HOM05D004766 ORTHO05D006159 1.1e-53 214.5 309 37.9
BolC4t28340H Brassica oleracea HOM05D000154 ORTHO05D000092 1.8e-51 207.2 214 51.4
BraA04t18557Z Brassica rapa HOM05D000154 ORTHO05D000092 2.3e-51 206.8 214 51.4
Mapoly0030s0020 Marchantia polymorpha HOM05D004766 ORTHO05D006159 1.8e-48 197.2 326 36.2
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 5.9e-47 192.2 278 41.4
CBR_g29836 Chara braunii HOM05D004766 ORTHO05D006159 5.5e-45 185.7 338 33.7
HanXRQChr02g0033011 Helianthus annuus HOM05D004766 ORTHO05D006159 2.7e-44 183.3 139 56.1
Solyc06g050180.3 Solanum lycopersicum HOM05D004766 ORTHO05D006159 1.3e-43 181.0 288 38.9
Hma1.2p1_2838F.1_g329300 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 1.9e-42 177.2 128 64.8
SMO347G0133 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 2.8e-41 173.3 309 34.6
MD01G1166300 Malus domestica HOM05D004766 ORTHO05D006159 1.1e-40 171.4 151 58.3
SMO347G0333 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 5.3e-40 169.1 303 34.7
Dinv21784 Davidia involucrata HOM05D004766 ORTHO05D006159 4.2e-37 159.5 115 63.5
MCO09G187 Micromonas commoda HOM05D004766 ORTHO05D006159 3.8e-30 136.3 280 32.5
AagrBONN_evm.TU.Sc2ySwM_228.73 Anthoceros agrestis HOM05D004766 ORTHO05D006159 1.1e-29 134.8 133 45.9
HanXRQChr03g0064211 Helianthus annuus HOM05D004766 ORTHO05D006159 1.9e-29 134.0 94 63.8
SHI28879 Sapria himalayana HOM05D004766 ORTHO05D006159 2.2e-22 110.5 78 61.5
SalBow5G1700 Salvia bowleyana HOM05D004766 ORTHO05D006159 1.8e-19 100.9 115 47.0
BolC4t21857H Brassica oleracea HOM05D000154 ORTHO05D000092 3.7e-17 93.2 172 38.4
AagrBONN_evm.TU.Sc2ySwM_336.9 Anthoceros agrestis HOM05D004766 ORTHO05D006159 1.6e-15 87.8 88 46.6
BcaC02g12723 Brassica carinata HOM05D000154 ORTHO05D000092 5.9e-15 85.9 159 39.6
HanXRQChr15g0483741 Helianthus annuus HOM05D004766 ORTHO05D006159 1.0e-14 85.1 55 67.3
Cre01.g030150 Chlamydomonas reinhardtii HOM05D004766 ORTHO05D006159 1.7e-14 84.3 128 39.8
PRCOL_00003324 Prasinoderma coloniale HOM05D004766 ORTHO05D006159 1.7e-14 84.3 301 25.6
SHI28878 Sapria himalayana HOM05D004766 ORTHO05D006159 1.7e-14 84.3 107 43.0
BcaC04g23924 Brassica carinata HOM05D004766 ORTHO05D039973 1.4e-11 74.7 42 71.4
A06p41130 Brassica napus HOM05D000061 ORTHO05D000050 3.0e-11 73.6 117 35.9
CSS0047727 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 3.0e-11 73.6 57 61.4
SHI28880 Sapria himalayana HOM05D004766 ORTHO05D006159 5.2e-11 72.8 57 59.6
BraA06t27036Z Brassica rapa HOM05D000061 ORTHO05D000050 6.8e-11 72.4 41 70.7
BolC1t04291H Brassica oleracea HOM05D004766 ORTHO05D008768 1.2e-10 71.6 41 70.7
C07p45160 Brassica napus HOM05D004766 ORTHO05D033383 7.5e-10 68.9 111 36.9
C09p32190 Brassica napus HOM05D004766 ORTHO05D008768 7.5e-10 68.9 111 36.9
MD01G1183300 Malus domestica HOM05D004766 ORTHO05D006159 1.8e-08 64.3 94 41.5


User provided reference genes

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