Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1069 Trochodendron aralioides HOM05D007586 ORTHO05D009554 4.0e-30 134.4 85 100.0
Thecc.04G272400 Theobroma cacao HOM05D007586 ORTHO05D009554 3.2e-19 98.2 52 88.5
Duzib151G0133 Durio zibethinus HOM05D007586 ORTHO05D009554 5.5e-19 97.4 52 86.5
Atru.chr4.2702 Acer truncatum HOM05D007586 ORTHO05D009554 9.3e-19 96.7 83 61.4
Actinidia00073 Actinidia chinensis HOM05D007586 ORTHO05D009554 1.2e-18 96.3 52 86.5
MBI19_g21636_MAGBIO Magnolia biondii HOM05D007586 ORTHO05D009554 1.2e-18 96.3 52 84.6
Nn4g26123 Nelumbo nucifera HOM05D007586 ORTHO05D009554 1.2e-18 96.3 87 62.1
Potri.008G198500 Populus trichocarpa HOM05D007586 ORTHO05D009554 7.9e-18 93.6 52 82.7
Prupe.1G146700 Prunus persica HOM05D007586 ORTHO05D009554 1.3e-17 92.8 52 80.8
Gohir.A10G105800 Gossypium hirsutum HOM05D007586 ORTHO05D009554 3.9e-17 91.3 46 89.1
Gohir.D10G162600 Gossypium hirsutum HOM05D007586 ORTHO05D009554 3.9e-17 91.3 46 89.1
Gorai.011G181700 Gossypium raimondii HOM05D007586 ORTHO05D009554 3.9e-17 91.3 46 89.1
PSO210G0926 Papaver somniferum HOM05D007586 ORTHO05D009554 3.9e-17 91.3 52 78.8
PSO832G2949 Papaver somniferum HOM05D007586 ORTHO05D009554 5.1e-17 90.9 52 78.8
Sabra08G0162000 Salix brachista HOM05D007586 ORTHO05D009554 6.7e-17 90.5 52 82.7
CSS0032912 Camellia sinensis var. sinensis HOM05D007586 ORTHO05D009554 8.7e-17 90.1 52 80.8
Potri.010G028000 Populus trichocarpa HOM05D007586 ORTHO05D009554 8.7e-17 90.1 52 80.8
QL06p006198 Quercus lobata HOM05D007586 ORTHO05D009554 2.5e-16 88.6 46 87.0
RcHm_v2.0_Chr4g0420101 Rosa chinensis HOM05D007586 ORTHO05D009554 2.5e-16 88.6 54 79.6
Manes.03G188100 Manihot esculenta HOM05D007586 ORTHO05D009554 3.3e-16 88.2 52 78.8
Cpa.g.sc16.72 Carica papaya HOM05D007586 ORTHO05D009554 4.3e-16 87.8 46 89.1
Dinv38351 Davidia involucrata HOM05D007586 ORTHO05D009554 4.3e-16 87.8 52 78.8
Hma1.2p1_2025F.1_g311520 Hydrangea macrophylla HOM05D007586 ORTHO05D009554 4.3e-16 87.8 47 83.0
BcaB01g05279 Brassica carinata HOM05D007586 ORTHO05D009554 1.3e-15 86.3 45 88.9
C03p10700 Brassica napus HOM05D007586 ORTHO05D009554 1.3e-15 86.3 45 88.9
Sp6g25470 Schrenkiella parvula HOM05D007586 ORTHO05D009554 1.3e-15 86.3 45 88.9
BcaB01g04886 Brassica carinata HOM05D007586 ORTHO05D009554 1.6e-15 85.9 45 86.7
COL.COLO4_13963 Corchorus olitorius HOM05D007586 ORTHO05D009554 1.6e-15 85.9 52 76.9
Haze_01009 Corylus avellana HOM05D007586 ORTHO05D009554 1.6e-15 85.9 46 84.8
Cc03_g02750 Coffea canephora HOM05D007586 ORTHO05D009554 2.2e-15 85.5 52 76.9
A03p09170 Brassica napus HOM05D007586 ORTHO05D009554 2.8e-15 85.1 45 86.7
BraA03t10240Z Brassica rapa HOM05D007586 ORTHO05D009554 2.8e-15 85.1 45 86.7
Thhalv10015193m.g Eutrema salsugineum HOM05D007586 ORTHO05D009554 2.8e-15 85.1 45 86.7
FvH4_4g16650 Fragaria vesca HOM05D007586 ORTHO05D009554 3.7e-15 84.7 51 74.5
FAN12G0362 Fragaria x ananassa HOM05D007586 ORTHO05D009554 3.7e-15 84.7 51 74.5
Sopen01g032230 Solanum pennellii HOM05D007586 ORTHO05D009554 4.8e-15 84.3 49 77.6
COL.COLO4_25734 Corchorus olitorius HOM05D007586 ORTHO05D009554 6.3e-15 84.0 52 75.0
MD13G1177700 Malus domestica HOM05D007586 ORTHO05D009554 6.3e-15 84.0 46 82.6
Sed0005131 Sechium edule HOM05D007586 ORTHO05D009554 6.3e-15 84.0 52 75.0
BraA10t44138Z Brassica rapa HOM05D007586 ORTHO05D009554 8.2e-15 83.6 45 84.4
vmacro15289 Vaccinium macrocarpon HOM05D007586 ORTHO05D009554 8.2e-15 83.6 52 75.0
Cfa015540 Carpinus fangiana HOM05D007586 ORTHO05D009554 1.1e-14 83.2 46 80.4
GSVIVG01017851001 Vitis vinifera HOM05D007586 ORTHO05D009554 1.4e-14 82.8 49 75.5
PGR031G0345 Punica granatum HOM05D007586 ORTHO05D009554 1.8e-14 82.4 49 77.6
AL6G30270 Arabidopsis lyrata HOM05D007586 ORTHO05D009554 2.4e-14 82.0 44 86.4
AT5G18920 Arabidopsis thaliana HOM05D007586 ORTHO05D009554 2.4e-14 82.0 44 86.4
Carub.0006s1722 Capsella rubella HOM05D007586 ORTHO05D009554 2.4e-14 82.0 44 86.4
CiPaw.02G089500 Carya illinoinensis HOM05D007586 ORTHO05D009554 2.4e-14 82.0 46 80.4
Ah.04g150810 Amaranthus hybridus HOM05D007586 ORTHO05D009554 3.1e-14 81.6 49 73.5
BcaB08g36636 Brassica carinata HOM05D007586 ORTHO05D009554 3.1e-14 81.6 44 84.1
unitig_749.g14058 Utricularia gibba HOM05D007586 ORTHO05D009554 3.1e-14 81.6 50 74.0
THA.LOC104802735 Tarenaya hassleriana HOM05D007586 ORTHO05D009554 4.1e-14 81.3 46 78.3
arahy.Tifrunner.gnm1.ann1.5VHG73 Arachis hypogaea HOM05D007586 ORTHO05D009554 5.3e-14 80.9 52 71.2
ATR0626G363 Amborella trichopoda HOM05D007586 ORTHO05D009554 6.9e-14 80.5 46 73.9
arahy.Tifrunner.gnm1.ann1.SH255N Arachis hypogaea HOM05D007586 ORTHO05D009554 6.9e-14 80.5 52 69.2
CsaV3_6G005530 Cucumis sativus L. HOM05D007586 ORTHO05D009554 6.9e-14 80.5 53 73.6
Lalb_Chr18g0055891 Lupinus albus HOM05D007586 ORTHO05D009554 6.9e-14 80.5 50 70.0
CARHR194100 Cardamine hirsuta HOM05D007586 ORTHO05D009554 9.0e-14 80.1 45 82.2
EL10Ac3g07262 Beta vulgaris HOM05D007586 ORTHO05D009554 2.6e-13 78.6 46 73.9
AUR62018376 Chenopodium quinoa HOM05D000949 ORTHO05D001276 2.6e-13 78.6 49 71.4
ClCG06G005620 Citrullus lanatus HOM05D007586 ORTHO05D009554 3.4e-13 78.2 53 71.7
DCAR_027132 Daucus carota HOM05D007586 ORTHO05D009554 4.5e-13 77.8 46 71.7
Glyma.15G100600 Glycine max HOM05D007586 ORTHO05D009554 4.5e-13 77.8 52 69.2
Medtr2g020920 Medicago truncatula HOM05D007586 ORTHO05D009554 4.5e-13 77.8 49 69.4
Os05g0404300 Oryza sativa ssp. japonica HOM05D007586 ORTHO05D009554 5.9e-13 77.4 52 67.3
Psat1g185520 Pisum sativum HOM05D007586 ORTHO05D009554 5.9e-13 77.4 51 66.7
Migut.G00284 Erythranthe guttata HOM05D007586 ORTHO05D009554 1.7e-12 75.9 46 76.1
SalBow2G2177 Salvia bowleyana HOM05D007586 ORTHO05D009554 1.7e-12 75.9 47 72.3
TPR.G18017 Trifolium pratense HOM05D007586 ORTHO05D009554 1.7e-12 75.9 49 67.3
Lj6g0006659 Lotus japonicus HOM05D007586 ORTHO05D009554 2.2e-12 75.5 49 69.4
Glyma.13G212100 Glycine max HOM05D007586 ORTHO05D009554 3.8e-12 74.7 52 65.4
Phvul.006G158200 Phaseolus vulgaris HOM05D007586 ORTHO05D009554 3.8e-12 74.7 52 67.3
ECA246G1660 Erigeron canadensis HOM05D007586 ORTHO05D009554 6.5e-12 73.9 51 64.7
Phvul.006G158400 Phaseolus vulgaris HOM05D007586 ORTHO05D009554 6.5e-12 73.9 52 65.4
SEGI_37206 Sequoiadendron giganteum HOM05D007586 ORTHO05D009554 8.5e-12 73.6 45 64.4
TWI09G0380 Tripterygium wilfordii HOM05D007586 ORTHO05D009554 8.5e-12 73.6 74 55.4
Zm00001eb349880 Zea mays HOM05D007586 ORTHO05D009554 1.9e-11 72.4 50 66.0
FAN22G2185 Fragaria x ananassa HOM05D007586 ORTHO05D009554 2.7e-10 68.6 51 66.7
arahy.Tifrunner.gnm1.ann1.70FWSL Arachis hypogaea HOM05D007586 ORTHO05D009554 4.6e-10 67.8 62 54.8
Ciclev10006319m.g Citrus clementina HOM05D007586 ORTHO05D009554 1.0e-09 66.6 35 80.0
Aa31LG11G10810 Aethionema arabicum HOM05D007586 ORTHO05D009554 6.7e-09 63.9 32 87.5
BolC3t13546H Brassica oleracea HOM05D007586 ORTHO05D009554 6.7e-09 63.9 32 87.5
Hma1.2p1_0511F.1_g169220 Hydrangea macrophylla HOM05D000488 ORTHO05D000347 8.8e-09 63.5 33 81.8
CANSAT01G2672 Cannabis sativa HOM05D007586 ORTHO05D009554 1.9e-08 62.4 32 81.2
Eucgr.B01188 Eucalyptus grandis HOM05D007586 ORTHO05D009554 1.9e-08 62.4 31 87.1
Lj3g0017006 Lotus japonicus HOM05D007586 ORTHO05D009554 9.7e-08 60.1 43 65.1
Pp3c2_37920 Physcomitrium patens HOM05D007586 ORTHO05D009554 9.7e-08 60.1 45 51.1
Ca_00589_v3 Cicer arietinum L. HOM05D002494 ORTHO05D002673 3.7e-07 58.2 32 75.0
Nitab4.5_0000201g0230 Nicotiana tabacum HOM05D007586 ORTHO05D009554 3.7e-07 58.2 32 75.0
Nitab4.5_0009518g0010 Nicotiana tabacum HOM05D007586 ORTHO05D009554 3.7e-07 58.2 32 75.0
A10p20750 Brassica napus HOM05D007586 ORTHO05D009554 4.8e-07 57.8 31 83.9


User provided reference genes

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