Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1032 Trochodendron aralioides HOM05D007590 ORTHO05D007875 8.2e-51 203.4 99 100.0
TAR375G1006 Trochodendron aralioides HOM05D007590 ORTHO05D007875 3.7e-35 151.4 97 75.3
TAR629G1835 Trochodendron aralioides HOM05D007590 ORTHO05D007875 4.1e-34 147.9 97 74.2
TAR374G1746 Trochodendron aralioides HOM05D007590 ORTHO05D007875 4.3e-31 137.9 100 71.0
TAR629G2201 Trochodendron aralioides HOM05D007590 ORTHO05D007875 1.2e-28 129.8 102 68.6
Nn1g01873 Nelumbo nucifera HOM05D007590 ORTHO05D007875 2.9e-27 125.2 102 66.7
Hma1.2p1_1746F.1_g300410 Hydrangea macrophylla HOM05D007590 ORTHO05D007875 1.2e-25 119.8 107 61.7
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 2.0e-25 119.0 99 62.6
Prupe.5G120200 Prunus persica HOM05D007590 ORTHO05D007875 1.3e-24 116.3 107 62.6
CiPaw.12G082900 Carya illinoinensis HOM05D007590 ORTHO05D007875 3.9e-24 114.8 106 60.4
Rhsim02G0243500 Rhododendron simsii HOM05D007590 ORTHO05D007875 1.1e-23 113.2 103 58.3
FAN13G0413 Fragaria x ananassa HOM05D007590 ORTHO05D007875 3.3e-23 111.7 106 61.3
Cfa012011 Carpinus fangiana HOM05D007590 ORTHO05D007875 4.3e-23 111.3 116 56.9
CiPaw.11G121300 Carya illinoinensis HOM05D007590 ORTHO05D007875 5.6e-23 110.9 96 62.5
FAN04G0970 Fragaria x ananassa HOM05D007590 ORTHO05D007875 5.6e-23 110.9 106 60.4
FAN08G0943 Fragaria x ananassa HOM05D007590 ORTHO05D007875 9.5e-23 110.2 106 58.5
RcHm_v2.0_Chr7g0194781 Rosa chinensis HOM05D007590 ORTHO05D007875 9.5e-23 110.2 107 61.7
Nn3g19015 Nelumbo nucifera HOM05D007590 ORTHO05D007875 1.2e-22 109.8 102 58.8
CSS0045762 Camellia sinensis var. sinensis HOM05D007590 ORTHO05D007875 2.1e-22 109.0 104 57.7
QL02p030422 Quercus lobata HOM05D007590 ORTHO05D007875 2.1e-22 109.0 110 57.3
MSTRG.25673 Avicennia marina HOM05D007590 ORTHO05D007875 3.6e-22 108.2 98 55.1
LjContig00312_ERROPOS870357g0000452 Lotus japonicus HOM05D007590 ORTHO05D007875 2.3e-21 105.5 112 56.2
CDE10G0927 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 2.0e-20 102.4 100 54.0
Peaxi162Scf00102g00178 Petunia axillaris HOM05D007590 ORTHO05D007875 2.6e-20 102.1 107 52.3
Actinidia22161 Actinidia chinensis HOM05D007590 ORTHO05D007875 9.8e-20 100.1 96 58.3
CDE10G0175 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 9.8e-20 100.1 97 57.7
AUR62010841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 1.3e-19 99.8 101 52.5
Aqoxy5G04230 Aquilegia oxysepala HOM05D007590 ORTHO05D007875 1.7e-19 99.4 105 54.3
PGSC0003DMG400012280 Solanum tuberosum HOM05D007590 ORTHO05D007875 1.7e-19 99.4 101 54.5
Solyc08g082370.1 Solanum lycopersicum HOM05D007590 ORTHO05D007875 4.9e-19 97.8 104 56.7
Sopen08g030630 Solanum pennellii HOM05D007590 ORTHO05D007875 4.9e-19 97.8 104 56.7
AUR62019841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 6.4e-19 97.4 101 52.5
Potri.001G091500 Populus trichocarpa HOM05D007590 ORTHO05D007875 6.4e-19 97.4 101 54.5
Cc08_g16080 Coffea canephora HOM05D007590 ORTHO05D007875 1.9e-18 95.9 110 50.9
TPR.G25602 Trifolium pratense HOM05D007590 ORTHO05D007875 3.2e-18 95.1 98 52.0
Glyma.01G225600 Glycine max HOM05D007590 ORTHO05D007875 5.4e-18 94.4 102 52.0
Phvul.002G164500 Phaseolus vulgaris HOM05D007590 ORTHO05D007875 5.4e-18 94.4 99 50.5
Lalb_Chr05g0211541 Lupinus albus HOM05D007590 ORTHO05D007875 1.6e-17 92.8 108 54.6
Medtr5g009260 Medicago truncatula HOM05D007590 ORTHO05D007875 1.6e-17 92.8 96 51.0
MSTRG.11924 Avicennia marina HOM05D007590 ORTHO05D007875 2.0e-17 92.4 100 52.0
Potri.003G140100 Populus trichocarpa HOM05D007590 ORTHO05D007875 2.0e-17 92.4 100 52.0
Ca_24513_v3 Cicer arietinum L. HOM05D007590 ORTHO05D007875 3.5e-17 91.7 99 50.5
Ca_29733_v3 Cicer arietinum L. HOM05D007590 ORTHO05D007875 3.5e-17 91.7 99 50.5
CANSAT21G0370 Cannabis sativa HOM05D007590 ORTHO05D007875 1.0e-16 90.1 120 49.2
Sabra01G0067900 Salix brachista HOM05D007590 ORTHO05D007875 1.0e-16 90.1 102 49.0
Sabra03G0101100 Salix brachista HOM05D007590 ORTHO05D007875 1.0e-16 90.1 103 51.5
HanXRQChr03g0083501 Helianthus annuus HOM05D007590 ORTHO05D007875 1.3e-16 89.7 108 48.1
Lsat_1_v5_gn_6_83961 Lactuca sativa HOM05D007590 ORTHO05D007875 1.3e-16 89.7 104 52.9
Manes.02G009900 Manihot esculenta HOM05D007590 ORTHO05D007875 2.3e-16 89.0 112 50.9
CiPaw.12G082700 Carya illinoinensis HOM05D007590 ORTHO05D007875 3.0e-16 88.6 99 55.6
Peaxi162Scf00074g00097 Petunia axillaris HOM05D007590 ORTHO05D007875 3.9e-16 88.2 87 57.5
Nitab4.5_0002782g0040 Nicotiana tabacum HOM05D007590 ORTHO05D007875 5.0e-16 87.8 97 54.6
EL10Ac5g12916 Beta vulgaris HOM05D007590 ORTHO05D007875 1.9e-15 85.9 77 59.7
Manes.02G010000 Manihot esculenta HOM05D007590 ORTHO05D007875 4.3e-15 84.7 108 50.9
MBI06_g08455_MAGBIO Magnolia biondii HOM05D007590 ORTHO05D007875 9.5e-15 83.6 98 44.9
Nitab4.5_0001231g0140 Nicotiana tabacum HOM05D007590 ORTHO05D007875 9.5e-15 83.6 97 51.5
PGSC0003DMG400005790 Solanum tuberosum HOM05D007590 ORTHO05D007875 2.1e-14 82.4 111 48.6
Cpa.g.sc79.34 Carica papaya HOM05D007590 ORTHO05D007875 4.7e-14 81.3 112 43.8
Glyma.11G017400 Glycine max HOM05D007590 ORTHO05D007875 4.7e-14 81.3 104 49.0
DCAR_006487 Daucus carota HOM05D007590 ORTHO05D007875 6.2e-14 80.9 107 43.0
Sed0026863 Sechium edule HOM05D007590 ORTHO05D007875 6.2e-14 80.9 109 45.9
Sopen08g004200 Solanum pennellii HOM05D007590 ORTHO05D007875 6.2e-14 80.9 111 47.7
CsaV3_4G006590 Cucumis sativus L. HOM05D007590 ORTHO05D007875 8.1e-14 80.5 103 47.6
Manes.01G049200 Manihot esculenta HOM05D007590 ORTHO05D007875 1.1e-13 80.1 93 49.5
Thecc.03G298200 Theobroma cacao HOM05D007590 ORTHO05D007875 1.4e-13 79.7 105 44.8
Ciclev10022592m.g Citrus clementina HOM05D007590 ORTHO05D007875 1.8e-13 79.3 109 43.1
Ah.12g052560 Amaranthus hybridus HOM05D007590 ORTHO05D007875 5.2e-13 77.8 114 43.0
ATR0602G105 Amborella trichopoda HOM05D007590 ORTHO05D007875 5.2e-13 77.8 126 40.5
Gorai.008G254500 Gossypium raimondii HOM05D007590 ORTHO05D007875 6.8e-13 77.4 102 45.1
Oeu063521.1 Olea europaea HOM05D007590 ORTHO05D007875 6.8e-13 77.4 99 46.5
Gohir.D12G237700 Gossypium hirsutum HOM05D007590 ORTHO05D007875 8.9e-13 77.0 102 44.1
Gohir.D12G237966 Gossypium hirsutum HOM05D007590 ORTHO05D007875 8.9e-13 77.0 102 44.1
MELO3C016294.2 Cucumis melo HOM05D007590 ORTHO05D007875 1.2e-12 76.6 104 47.1
PGR031G2453 Punica granatum HOM05D007590 ORTHO05D007875 1.2e-12 76.6 122 47.5
Duzib205G1174 Durio zibethinus HOM05D007590 ORTHO05D007875 1.5e-12 76.3 97 46.4
Lsat_1_v5_gn_3_10720 Lactuca sativa HOM05D007590 ORTHO05D007875 1.5e-12 76.3 110 42.7
Sed0003477 Sechium edule HOM05D007590 ORTHO05D007875 1.5e-12 76.3 101 44.6
Duzib068G0682 Durio zibethinus HOM05D007590 ORTHO05D007875 2.0e-12 75.9 100 43.0
TWI60G0225 Tripterygium wilfordii HOM05D007590 ORTHO05D007875 2.0e-12 75.9 113 47.8
Gohir.A12G236500 Gossypium hirsutum HOM05D007590 ORTHO05D007875 4.4e-12 74.7 104 44.2
BcaB07g31500 Brassica carinata HOM05D010600 ORTHO05D007875 7.5e-12 73.9 109 38.5
Duzib084G0874 Durio zibethinus HOM05D007590 ORTHO05D007875 1.3e-11 73.2 97 43.3
SGA_v2.0_scaffold305G47972 Striga asiatica HOM05D007590 ORTHO05D007875 1.3e-11 73.2 99 46.5
BcaC04g22619 Brassica carinata HOM05D010600 ORTHO05D007875 1.7e-11 72.8 109 37.6
SalBow1G4032 Salvia bowleyana HOM05D007590 ORTHO05D007875 1.7e-11 72.8 93 48.4
SalBow1G6340 Salvia bowleyana HOM05D007590 ORTHO05D007875 1.7e-11 72.8 93 48.4
A09p14360 Brassica napus HOM05D010600 ORTHO05D007875 2.2e-11 72.4 111 37.8
BraA09t37083Z Brassica rapa HOM05D010600 ORTHO05D007875 2.2e-11 72.4 111 37.8
Thhalv10023875m.g Eutrema salsugineum HOM05D010600 ORTHO05D007875 4.9e-11 71.2 115 37.4
ClCG07G011620 Citrullus lanatus HOM05D007590 ORTHO05D007875 6.4e-11 70.9 66 56.1
COL.COLO4_10703 Corchorus olitorius HOM05D007590 ORTHO05D007875 1.4e-10 69.7 63 57.1
Haze_09063 Corylus avellana HOM05D007590 ORTHO05D007875 1.4e-10 69.7 74 51.4
Eucgr.D01739 Eucalyptus grandis HOM05D007590 ORTHO05D007875 1.4e-10 69.7 134 41.0
BolC9t54630H Brassica oleracea HOM05D010600 ORTHO05D007875 1.9e-10 69.3 109 35.8
C09p17280 Brassica napus HOM05D010600 ORTHO05D007875 2.4e-10 68.9 109 36.7
Migut.A00642 Erythranthe guttata HOM05D007590 ORTHO05D007875 2.4e-10 68.9 98 42.9
HPP92_008631 Vanilla planifolia HOM05D026338 ORTHO05D007875 2.4e-10 68.9 96 39.6
Duzib068G0902 Durio zibethinus HOM05D007590 ORTHO05D007875 3.2e-10 68.6 88 44.3
Sp2g00320 Schrenkiella parvula HOM05D010600 ORTHO05D007875 3.2e-10 68.6 113 38.9
AL2G10440 Arabidopsis lyrata HOM05D010600 ORTHO05D007875 9.2e-10 67.0 112 36.6
THA.LOC104817601 Tarenaya hassleriana HOM05D010600 ORTHO05D007875 9.2e-10 67.0 103 41.7
AT1G64405 Arabidopsis thaliana HOM05D010600 ORTHO05D007875 2.1e-09 65.9 116 35.3
BcaB07g31463 Brassica carinata HOM05D010600 ORTHO05D007875 2.1e-09 65.9 113 36.3
Aa31LG2G1420 Aethionema arabicum HOM05D010600 ORTHO05D007875 2.7e-09 65.5 114 36.0
Carub.0002s0036 Capsella rubella HOM05D010600 ORTHO05D007875 2.7e-09 65.5 116 36.2
Sc07g0010040 Simmondsia chinensis HOM05D007590 ORTHO05D007875 1.7e-08 62.8 111 40.5
Gohir.A02G100200 Gossypium hirsutum HOM05D007590 ORTHO05D007875 6.6e-08 60.8 93 40.9
CARHR046510 Cardamine hirsuta HOM05D010600 ORTHO05D007875 8.6e-08 60.5 113 35.4
FvH4_5g04610 Fragaria vesca HOM05D007590 ORTHO05D007875 8.6e-08 60.5 46 67.4
FAN18G1504 Fragaria x ananassa HOM05D005474 ORTHO05D006551 8.6e-08 60.5 46 67.4
FAN18G3330 Fragaria x ananassa HOM05D005474 ORTHO05D006551 8.6e-08 60.5 46 67.4
BcaC04g22568 Brassica carinata HOM05D010600 ORTHO05D007875 1.1e-07 60.1 113 33.6
C09p17810 Brassica napus HOM05D010600 ORTHO05D007875 1.1e-07 60.1 115 34.8
BolC9t54679H Brassica oleracea HOM05D010600 ORTHO05D007875 1.1e-07 60.1 115 34.8
SalBow8G4830 Salvia bowleyana HOM05D007590 ORTHO05D007875 2.5e-07 58.9 57 50.9
Gorai.003G079000 Gossypium raimondii HOM05D007590 ORTHO05D007875 3.3e-07 58.5 93 40.9
Gohir.A02G100100 Gossypium hirsutum HOM05D007590 ORTHO05D007875 5.6e-07 57.8 93 41.9
Gohir.D03G083700 Gossypium hirsutum HOM05D007590 ORTHO05D007875 5.6e-07 57.8 93 40.9
Zm00001eb277920 Zea mays HOM05D021977 ORTHO05D007875 7.3e-07 57.4 111 35.1
THA.LOC104815061 Tarenaya hassleriana HOM05D008938 ORTHO05D011105 1.2e-06 56.6 106 40.6


User provided reference genes

Program Settings