Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G1018 Trochodendron aralioides HOM05D001519 ORTHO05D001403 2.4e-80 302.4 145 100.0
TAR629G1478 Trochodendron aralioides HOM05D001519 ORTHO05D001403 1.9e-29 133.3 187 47.6
CiPaw.06G004000 Carya illinoinensis HOM05D001519 ORTHO05D001403 4.9e-25 118.6 183 44.3
TWI23G0850 Tripterygium wilfordii HOM05D001519 ORTHO05D001403 1.1e-24 117.5 184 43.5
Cfa016301 Carpinus fangiana HOM05D001519 ORTHO05D001403 1.9e-24 116.7 184 45.1
Dinv35265 Davidia involucrata HOM05D002465 ORTHO05D008860 2.4e-24 116.3 197 43.7
Nn6g32418 Nelumbo nucifera HOM05D001519 ORTHO05D001403 3.2e-24 115.9 187 41.7
CSS0045369 Camellia sinensis var. sinensis HOM05D001519 ORTHO05D001403 4.2e-24 115.5 181 44.2
CSS0049483 Camellia sinensis var. sinensis HOM05D001519 ORTHO05D001403 4.2e-24 115.5 181 44.2
CDE04G3401 Ceratophyllum demersum HOM05D001519 ORTHO05D001403 4.2e-24 115.5 154 45.5
Lj1A1006G36 Lonicera japonica HOM05D001519 ORTHO05D001403 4.2e-24 115.5 180 43.9
Eucgr.A02720 Eucalyptus grandis HOM05D001519 ORTHO05D001403 5.5e-24 115.2 182 42.3
PSO478G4244 Papaver somniferum HOM05D001519 ORTHO05D001403 5.5e-24 115.2 183 43.2
vmacro06617 Vaccinium macrocarpon HOM05D001519 ORTHO05D001403 5.5e-24 115.2 181 42.5
PSO266G0004 Papaver somniferum HOM05D001519 ORTHO05D001403 7.1e-24 114.8 183 42.6
MD07G1280000 Malus domestica HOM05D001519 ORTHO05D001403 1.2e-23 114.0 182 41.2
Rhsim03G0192000 Rhododendron simsii HOM05D001519 ORTHO05D001403 1.2e-23 114.0 181 44.8
MELO3C006950.2 Cucumis melo HOM05D001519 ORTHO05D001403 2.1e-23 113.2 181 44.2
CsaV3_3G017570 Cucumis sativus L. HOM05D001519 ORTHO05D001403 2.1e-23 113.2 180 41.1
ClCG05G008480 Citrullus lanatus HOM05D001519 ORTHO05D001403 2.7e-23 112.8 180 41.7
Duzib205G1719 Durio zibethinus HOM05D001519 ORTHO05D001403 2.7e-23 112.8 183 43.2
GSVIVG01028826001 Vitis vinifera HOM05D001519 ORTHO05D001403 2.7e-23 112.8 183 44.3
Cpa.g.sc107.124 Carica papaya HOM05D001519 ORTHO05D001403 3.5e-23 112.5 180 42.8
Gohir.D11G228300 Gossypium hirsutum HOM05D001519 ORTHO05D001403 4.6e-23 112.1 186 40.3
Gorai.003G069300 Gossypium raimondii HOM05D001519 ORTHO05D001403 4.6e-23 112.1 186 40.3
Thecc.03G185800 Theobroma cacao HOM05D001519 ORTHO05D001403 4.6e-23 112.1 183 42.6
Duzib084G0137 Durio zibethinus HOM05D001519 ORTHO05D001403 6.0e-23 111.7 183 43.2
Cc02_g31330 Coffea canephora HOM05D001519 ORTHO05D001403 7.9e-23 111.3 183 42.6
HanXRQChr14g0451811 Helianthus annuus HOM05D001519 ORTHO05D001403 7.9e-23 111.3 189 42.9
Lsat_1_v5_gn_2_131460 Lactuca sativa HOM05D001519 ORTHO05D001403 1.0e-22 110.9 180 42.2
Prupe.2G302200 Prunus persica HOM05D001519 ORTHO05D001403 1.0e-22 110.9 180 42.2
TWI14G0780 Tripterygium wilfordii HOM05D001519 ORTHO05D001403 1.0e-22 110.9 184 42.4
Manes.14G021300 Manihot esculenta HOM05D001519 ORTHO05D001403 1.3e-22 110.5 183 42.6
QL09p012471 Quercus lobata HOM05D001519 ORTHO05D001403 1.8e-22 110.2 182 42.3
Solyc03g007600.3 Solanum lycopersicum HOM05D001519 ORTHO05D001403 1.8e-22 110.2 189 40.7
Gohir.A11G225100 Gossypium hirsutum HOM05D001519 ORTHO05D001403 2.3e-22 109.8 186 39.8
MBI03_g46998_MAGBIO Magnolia biondii HOM05D001519 ORTHO05D001403 2.3e-22 109.8 180 42.8
Ciclev10005483m.g Citrus clementina HOM05D001519 ORTHO05D001403 3.0e-22 109.4 183 43.7
Haze_00058 Corylus avellana HOM05D001519 ORTHO05D001403 3.0e-22 109.4 204 40.7
Actinidia34164 Actinidia chinensis HOM05D001519 ORTHO05D001403 3.9e-22 109.0 181 42.0
PGR042G3254 Punica granatum HOM05D001519 ORTHO05D001403 5.1e-22 108.6 179 42.5
Hund04796 Selenicereus undatus HOM05D001519 ORTHO05D001403 5.1e-22 108.6 180 44.4
Hma1.2p1_1713F.1_g298860 Hydrangea macrophylla HOM05D001519 ORTHO05D001403 8.7e-22 107.8 179 41.9
MD01G1209900 Malus domestica HOM05D001519 ORTHO05D001403 8.7e-22 107.8 182 40.1
Sopen03g003550 Solanum pennellii HOM05D001519 ORTHO05D001403 8.7e-22 107.8 188 40.4
ATR0006G014 Amborella trichopoda HOM05D001519 ORTHO05D001403 1.1e-21 107.5 181 41.4
ECA238G0627 Erigeron canadensis HOM05D001519 ORTHO05D001403 1.1e-21 107.5 181 41.4
Nitab4.5_0000472g0130 Nicotiana tabacum HOM05D001519 ORTHO05D001403 1.5e-21 107.1 178 42.1
THA.LOC104811946 Tarenaya hassleriana HOM05D001519 ORTHO05D001403 1.5e-21 107.1 184 38.6
BcaC09g51248 Brassica carinata HOM05D001519 ORTHO05D001403 1.9e-21 106.7 180 38.9
C01p15130 Brassica napus HOM05D001519 ORTHO05D001403 1.9e-21 106.7 180 38.9
BolC1t01462H Brassica oleracea HOM05D001519 ORTHO05D001403 1.9e-21 106.7 180 38.9
BraA01t01199Z Brassica rapa HOM05D001519 ORTHO05D001403 1.9e-21 106.7 180 38.9
Peaxi162Scf00444g00241 Petunia axillaris HOM05D001519 ORTHO05D001403 1.9e-21 106.7 178 41.6
PGSC0003DMG400009505 Solanum tuberosum HOM05D001519 ORTHO05D001403 1.9e-21 106.7 199 35.7
BcaNung03835 Brassica carinata HOM05D001519 ORTHO05D001403 2.5e-21 106.3 180 38.9
Oeu002073.1 Olea europaea HOM05D001519 ORTHO05D003260 2.5e-21 106.3 183 42.1
COL.COLO4_30294 Corchorus olitorius HOM05D001519 ORTHO05D001403 3.3e-21 105.9 182 39.0
Atru.chr1.339 Acer truncatum HOM05D001519 ORTHO05D001403 4.3e-21 105.5 182 41.8
Atru.ctg97_1.43 Acer truncatum HOM05D001519 ORTHO05D001403 4.3e-21 105.5 182 41.8
AUR62021104 Chenopodium quinoa HOM05D001519 ORTHO05D001403 4.3e-21 105.5 180 41.1
BcaC06g30654 Brassica carinata HOM05D001519 ORTHO05D001403 5.6e-21 105.1 180 38.3
DCAR_010655 Daucus carota HOM05D001519 ORTHO05D001403 5.6e-21 105.1 179 43.6
A01p12540 Brassica napus HOM05D001519 ORTHO05D001403 7.4e-21 104.8 180 38.3
CAN.G126.38 Capsicum annuum HOM05D001519 ORTHO05D001403 7.4e-21 104.8 180 40.0
AUR62031436 Chenopodium quinoa HOM05D001519 ORTHO05D001403 7.4e-21 104.8 180 41.1
A03p52680 Brassica napus HOM05D001519 ORTHO05D001403 9.6e-21 104.4 180 37.8
C07p51110 Brassica napus HOM05D001519 ORTHO05D001403 9.6e-21 104.4 180 37.8
RcHm_v2.0_Chr1g0378571 Rosa chinensis HOM05D001519 ORTHO05D001403 9.6e-21 104.4 183 40.4
EL10Ac3g05403 Beta vulgaris HOM05D001519 ORTHO05D001403 1.3e-20 104.0 185 38.9
Carub.0007s2024 Capsella rubella HOM05D001519 ORTHO05D001403 1.3e-20 104.0 184 38.0
CARHR227770 Cardamine hirsuta HOM05D001519 ORTHO05D001403 1.3e-20 104.0 181 39.2
Sp7g19270 Schrenkiella parvula HOM05D001519 ORTHO05D001403 1.3e-20 104.0 180 37.8
Sed0012040 Sechium edule HOM05D001519 ORTHO05D001403 1.3e-20 104.0 181 43.6
TPR.G9159 Trifolium pratense HOM05D001519 ORTHO05D001403 1.3e-20 104.0 177 41.2
Actinidia08588 Actinidia chinensis HOM05D001519 ORTHO05D001403 1.6e-20 103.6 181 39.8
BraA03t14342Z Brassica rapa HOM05D001519 ORTHO05D001403 1.6e-20 103.6 180 37.8
FAN01G1384 Fragaria x ananassa HOM05D001519 ORTHO05D001403 1.6e-20 103.6 182 39.0
unitig_8.g3897 Utricularia gibba HOM05D001519 ORTHO05D001403 1.6e-20 103.6 174 40.8
Migut.N00099 Erythranthe guttata HOM05D001519 ORTHO05D001403 2.1e-20 103.2 177 42.9
FvH4_7g30430 Fragaria vesca HOM05D001519 ORTHO05D001403 2.8e-20 102.8 182 39.0
FAN06G2087 Fragaria x ananassa HOM05D001519 ORTHO05D001403 2.8e-20 102.8 182 39.0
FAN10G2765 Fragaria x ananassa HOM05D001519 ORTHO05D001403 2.8e-20 102.8 182 39.0
FAN03G0270 Fragaria x ananassa HOM05D001519 ORTHO05D001403 3.7e-20 102.4 182 39.0
FAN03G2573 Fragaria x ananassa HOM05D001519 ORTHO05D001403 3.7e-20 102.4 182 39.0
Thhalv10025765m.g Eutrema salsugineum HOM05D001519 ORTHO05D001403 6.2e-20 101.7 184 37.0
Lalb_Chr19g0130541 Lupinus albus HOM05D001519 ORTHO05D001403 6.2e-20 101.7 186 39.2
Nitab4.5_0001331g0030 Nicotiana tabacum HOM05D001519 ORTHO05D001403 6.2e-20 101.7 197 39.6
Psat4g006360 Pisum sativum HOM05D001519 ORTHO05D001403 6.2e-20 101.7 175 43.4
Potri.017G148700 Populus trichocarpa HOM05D001519 ORTHO05D001403 6.2e-20 101.7 181 39.2
AL7G32930 Arabidopsis lyrata HOM05D001519 ORTHO05D001403 8.2e-20 101.3 185 38.4
AT4G21190 Arabidopsis thaliana HOM05D001519 ORTHO05D001403 8.2e-20 101.3 185 38.4
MSTRG.24788 Avicennia marina HOM05D001519 ORTHO05D001403 1.4e-19 100.5 200 38.5
Glyma.16G177300 Glycine max HOM05D001519 ORTHO05D001403 1.4e-19 100.5 175 41.1
Sabra17G0124000 Salix brachista HOM05D001519 ORTHO05D001403 1.4e-19 100.5 181 38.1
SGA_v2.0_scaffold236G43723 Striga asiatica HOM05D001519 ORTHO05D001403 1.4e-19 100.5 177 39.0
Zm00001eb152660 Zea mays HOM05D001519 ORTHO05D001403 1.4e-19 100.5 176 43.2
Ca_26804_v3 Cicer arietinum L. HOM05D001519 ORTHO05D001403 2.4e-19 99.8 179 42.5
Glyma.09G129400 Glycine max HOM05D001519 ORTHO05D001403 4.0e-19 99.0 175 39.4
Lj2g0020073 Lotus japonicus HOM05D001519 ORTHO05D001403 5.3e-19 98.6 185 39.5
Zm00001eb370620 Zea mays HOM05D001519 ORTHO05D001403 6.9e-19 98.2 174 41.4
CANSAT21G1537 Cannabis sativa HOM05D001519 ORTHO05D001403 1.2e-18 97.4 182 36.3
HPP92_003513 Vanilla planifolia HOM05D001519 ORTHO05D001403 2.0e-18 96.7 175 40.0
Aa31LG6G3190 Aethionema arabicum HOM05D001519 ORTHO05D001403 5.8e-18 95.1 177 36.2
Phvul.004G106000 Phaseolus vulgaris HOM05D001519 ORTHO05D001403 7.6e-18 94.7 175 37.7
Aqoxy3G03794 Aquilegia oxysepala HOM05D001519 ORTHO05D001403 4.9e-17 92.0 184 38.0
BcaNung00866 Brassica carinata HOM05D001519 ORTHO05D001403 2.7e-15 86.3 155 35.5
Gohir.A06G082460 Gossypium hirsutum HOM05D001519 ORTHO05D001403 1.8e-14 83.6 46 89.1
Gohir.D05G324550 Gossypium hirsutum HOM05D001519 ORTHO05D001403 1.8e-14 83.6 46 89.1
Gorai.006G064400 Gossypium raimondii HOM05D001519 ORTHO05D001403 2.3e-14 83.2 46 89.1
Gohir.A06G191800 Gossypium hirsutum HOM05D001519 ORTHO05D001403 3.0e-14 82.8 46 89.1
Gohir.A07G137500 Gossypium hirsutum HOM05D001519 ORTHO05D001403 3.0e-14 82.8 46 89.1
Gohir.D01G110766 Gossypium hirsutum HOM05D001519 ORTHO05D001403 3.0e-14 82.8 46 89.1
Gohir.D02G092960 Gossypium hirsutum HOM05D001519 ORTHO05D001403 3.0e-14 82.8 46 89.1
Gohir.D02G121533 Gossypium hirsutum HOM05D001519 ORTHO05D001403 3.0e-14 82.8 46 89.1
Os01g0757700 Oryza sativa ssp. japonica HOM05D001519 ORTHO05D001403 3.0e-14 82.8 46 87.0
Sc19g0000910 Simmondsia chinensis HOM05D001519 ORTHO05D001403 3.0e-14 82.8 46 89.1
Gohir.D09G046000 Gossypium hirsutum HOM05D001519 ORTHO05D018179 5.1e-14 82.0 46 87.0
FAN06G3657 Fragaria x ananassa HOM05D001519 ORTHO05D001403 8.7e-14 81.3 46 87.0
Gorai.009G450000 Gossypium raimondii HOM05D001519 ORTHO05D001403 3.3e-13 79.3 46 87.0
Medtr6g053090 Medicago truncatula HOM05D001519 ORTHO05D001403 4.3e-13 79.0 46 80.4
SMO232G0025 Selaginella moellendorffii HOM05D001519 ORTHO05D001403 3.1e-11 72.8 179 30.7
Gorai.010G141200 Gossypium raimondii HOM05D001519 ORTHO05D001403 1.5e-10 70.5 38 84.2
AagrBONN_evm.TU.Sc2ySwM_228.1938 Anthoceros agrestis HOM05D001519 ORTHO05D001403 1.0e-09 67.8 46 67.4
Mapoly0053s0063 Marchantia polymorpha HOM05D001519 ORTHO05D001403 1.7e-09 67.0 70 47.1
TWI09G1171 Tripterygium wilfordii HOM05D001519 ORTHO05D001403 2.2e-09 66.6 182 29.1
HanXRQChr07g0203241 Helianthus annuus HOM05D001519 ORTHO05D001403 1.4e-08 63.9 176 29.0
Haze_05459 Corylus avellana HOM05D001519 ORTHO05D001403 3.2e-08 62.8 182 27.5
Lsat_1_v5_gn_5_21060 Lactuca sativa HOM05D001519 ORTHO05D001403 5.5e-08 62.0 174 31.6
FAN25G2732 Fragaria x ananassa HOM05D001519 ORTHO05D001403 9.4e-08 61.2 189 25.9
GSVIVG01021319001 Vitis vinifera HOM05D001519 ORTHO05D001403 9.4e-08 61.2 180 28.9
ClCG07G003760 Citrullus lanatus HOM05D001519 ORTHO05D001403 2.1e-07 60.1 181 30.9
Pp3c21_550 Physcomitrium patens HOM05D001519 ORTHO05D001403 2.1e-07 60.1 42 57.1
arahy.Tifrunner.gnm1.ann1.7XG90Z Arachis hypogaea HOM05D001519 ORTHO05D001403 2.7e-07 59.7 181 28.2
arahy.Tifrunner.gnm1.ann1.DP20MQ Arachis hypogaea HOM05D001519 ORTHO05D001403 2.7e-07 59.7 181 28.2
arahy.Tifrunner.gnm1.ann1.FLQ7SK Arachis hypogaea HOM05D001519 ORTHO05D001403 2.7e-07 59.7 181 28.2
CiPaw.09G132300 Carya illinoinensis HOM05D001519 ORTHO05D001403 3.6e-07 59.3 171 27.5
Migut.F01503 Erythranthe guttata HOM05D001519 ORTHO05D001403 3.6e-07 59.3 174 28.7
Solyc02g071570.4 Solanum lycopersicum HOM05D001519 ORTHO05D001403 6.1e-07 58.5 46 58.7
Sopen02g020590 Solanum pennellii HOM05D001519 ORTHO05D001403 6.1e-07 58.5 46 58.7
PGSC0003DMG400007246 Solanum tuberosum HOM05D001519 ORTHO05D001403 6.1e-07 58.5 46 58.7
ECA246G5076 Erigeron canadensis HOM05D001519 ORTHO05D001403 7.9e-07 58.2 174 28.2
Gohir.D04G031550 Gossypium hirsutum HOM05D001519 ORTHO05D001403 7.9e-07 58.2 159 28.3
Oeu040944.1 Olea europaea HOM05D001519 ORTHO05D001403 7.9e-07 58.2 46 58.7
CAN.G257.112 Capsicum annuum HOM05D001519 ORTHO05D001403 1.0e-06 57.8 46 58.7
AUR62027623 Chenopodium quinoa HOM05D001519 ORTHO05D001403 1.0e-06 57.8 46 56.5
Gorai.012G035700 Gossypium raimondii HOM05D001519 ORTHO05D001403 1.0e-06 57.8 153 28.8
Carub.0007s2220 Capsella rubella HOM05D001519 ORTHO05D001403 1.4e-06 57.4 46 54.3
QL05p052713 Quercus lobata HOM05D001519 ORTHO05D001403 1.8e-06 57.0 46 56.5
SGA_v2.0_scaffold1G00117 Striga asiatica HOM05D001519 ORTHO05D001403 1.8e-06 57.0 44 63.6
Zm00001eb323500 Zea mays HOM05D001519 ORTHO05D001403 1.8e-06 57.0 142 26.8
HanXRQChr07g0203331 Helianthus annuus HOM05D001519 ORTHO05D001403 2.3e-06 56.6 46 54.3
Lj1g0019575 Lotus japonicus HOM05D001519 ORTHO05D001403 3.0e-06 56.2 46 58.7
Manes.14G149000 Manihot esculenta HOM05D001519 ORTHO05D001403 3.0e-06 56.2 46 56.5
SalBow8G0244 Salvia bowleyana HOM05D001519 ORTHO05D001403 3.0e-06 56.2 46 58.7
Cc09_g10070 Coffea canephora HOM05D001519 ORTHO05D001403 3.9e-06 55.8 46 56.5
MBI15_g33464_MAGBIO Magnolia biondii HOM05D001519 ORTHO05D001403 3.9e-06 55.8 46 52.2
Potri.011G076800 Populus trichocarpa HOM05D001519 ORTHO05D001403 3.9e-06 55.8 46 56.5
Sabra11G0063900 Salix brachista HOM05D001519 ORTHO05D001403 3.9e-06 55.8 46 56.5
Atru.chr2.723 Acer truncatum HOM05D002472 ORTHO05D002827 5.1e-06 55.5 46 52.2
CANSAT35G1674 Cannabis sativa HOM05D001519 ORTHO05D001403 5.1e-06 55.5 46 54.3
Gohir.D01G056000 Gossypium hirsutum HOM05D001519 ORTHO05D001403 5.1e-06 55.5 50 48.0
Lj2A312T42 Lonicera japonica HOM05D001519 ORTHO05D001403 5.1e-06 55.5 46 54.3
Nitab4.5_0003913g0070 Nicotiana tabacum HOM05D001519 ORTHO05D001403 5.1e-06 55.5 46 56.5
Nitab4.5_0005943g0040 Nicotiana tabacum HOM05D001519 ORTHO05D001403 5.1e-06 55.5 46 56.5
PGR142G3347 Punica granatum HOM05D001519 ORTHO05D001403 5.1e-06 55.5 46 56.5
SalBow4G2660 Salvia bowleyana HOM05D001519 ORTHO05D001403 5.1e-06 55.5 113 31.0
SalBow8G1654 Salvia bowleyana HOM05D001519 ORTHO05D001403 5.1e-06 55.5 46 58.7
CiPaw.13G039600 Carya illinoinensis HOM05D001519 ORTHO05D001403 6.7e-06 55.1 42 52.4
Gorai.002G076100 Gossypium raimondii HOM05D001519 ORTHO05D001403 6.7e-06 55.1 50 48.0
Peaxi162Scf00032g00031 Petunia axillaris HOM05D001519 ORTHO05D001403 6.7e-06 55.1 42 61.9
RcHm_v2.0_Chr2g0135651 Rosa chinensis HOM05D001519 ORTHO05D001403 6.7e-06 55.1 27 92.6
TWI63G1726 Tripterygium wilfordii HOM05D001519 ORTHO05D001403 6.7e-06 55.1 46 50.0
Aqoxy6G00674 Aquilegia oxysepala HOM05D001519 ORTHO05D001403 8.8e-06 54.7 46 52.2
Ciclev10016169m.g Citrus clementina HOM05D001519 ORTHO05D001403 8.8e-06 54.7 174 29.9
Ciclev10021498m.g Citrus clementina HOM05D001519 ORTHO05D001403 8.8e-06 54.7 46 50.0
Dinv04556 Davidia involucrata HOM05D001519 ORTHO05D001403 8.8e-06 54.7 46 58.7
Glyma.15G089500 Glycine max HOM05D001519 ORTHO05D001403 8.8e-06 54.7 46 56.5
Medtr3g024400 Medicago truncatula HOM05D001519 ORTHO05D001403 8.8e-06 54.7 46 56.5
Phvul.006G168700 Phaseolus vulgaris HOM05D001519 ORTHO05D001403 8.8e-06 54.7 46 56.5
Psat5g202080 Pisum sativum HOM05D001519 ORTHO05D001403 8.8e-06 54.7 46 54.3


User provided reference genes

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