Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G0947 Trochodendron aralioides HOM05D003812 ORTHO05D004393 1.7e-154 549.3 269 100.0
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 2.6e-147 525.4 265 96.6
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 7.6e-99 364.4 266 68.8
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 6.0e-88 328.2 267 64.4
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 2.3e-87 326.2 267 65.5
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 7.4e-86 321.2 268 61.6
Hma1.2p1_0381F.1_g140050 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 1.3e-85 320.5 268 64.2
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 2.6e-83 312.8 275 61.1
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 2.6e-83 312.8 267 62.5
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 6.5e-82 308.1 268 60.4
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 1.9e-81 306.6 269 58.0
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 1.8e-79 300.1 269 58.4
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 8.2e-77 291.2 268 58.6
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 4.1e-76 288.9 271 59.0
Lalb_Chr05g0212041 Lupinus albus HOM05D003812 ORTHO05D004393 6.9e-76 288.1 271 57.6
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 2.6e-75 286.2 268 55.6
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 5.9e-75 285.0 271 58.3
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 1.0e-74 284.3 268 55.2
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 1.7e-74 283.5 268 55.6
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 1.1e-73 280.8 267 55.4
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 3.2e-73 279.3 268 57.8
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 3.2e-73 279.3 268 59.0
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 2.1e-72 276.6 268 56.7
Sc13g0007550 Simmondsia chinensis HOM05D003812 ORTHO05D004393 4.6e-72 275.4 268 53.7
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 7.9e-72 274.6 255 58.0
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 3.0e-71 272.7 266 56.4
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 3.9e-71 272.3 269 56.1
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 5.1e-71 271.9 253 60.1
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 5.1e-71 271.9 275 57.8
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 8.7e-71 271.2 252 56.3
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 8.7e-71 271.2 276 52.9
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 8.7e-71 271.2 272 55.1
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 1.5e-70 270.4 269 55.8
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 1.9e-70 270.0 270 54.8
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 2.5e-70 269.6 267 54.7
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 7.4e-70 268.1 271 55.7
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 2.2e-69 266.5 267 55.4
RcHm_v2.0_Chr2g0084531 Rosa chinensis HOM05D003812 ORTHO05D004393 6.3e-69 265.0 298 51.0
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 8.2e-69 264.6 275 55.3
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 1.1e-68 264.2 268 55.2
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 1.4e-68 263.8 278 54.3
arahy.Tifrunner.gnm1.ann1.B1HR4A Arachis hypogaea HOM05D003812 ORTHO05D004393 1.8e-68 263.5 283 53.4
arahy.Tifrunner.gnm1.ann1.CNXN93 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.8e-68 263.5 283 53.4
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 3.1e-68 262.7 274 54.0
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 5.3e-68 261.9 253 55.3
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 5.3e-68 261.9 253 55.3
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 6.9e-68 261.5 272 54.0
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 9.1e-68 261.2 271 52.0
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 3.4e-67 259.2 268 53.0
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 3.4e-67 259.2 269 53.9
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 4.5e-67 258.8 273 53.5
Nitab4.5_0010162g0010 Nicotiana tabacum HOM05D003812 ORTHO05D004393 4.5e-67 258.8 269 53.5
Cc00_g24630 Coffea canephora HOM05D003812 ORTHO05D004393 1.0e-66 257.7 252 58.7
vmacro06691 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 1.0e-66 257.7 223 61.9
TPR.G23263 Trifolium pratense HOM05D003812 ORTHO05D004393 1.3e-66 257.3 271 52.4
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 1.1e-65 254.2 270 53.0
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 1.9e-65 253.4 268 53.4
TPR.G11261 Trifolium pratense HOM05D003812 ORTHO05D004393 7.2e-65 251.5 271 52.8
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 9.4e-65 251.1 253 56.5
Hund12300 Selenicereus undatus HOM05D003812 ORTHO05D004393 6.1e-64 248.4 262 54.6
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 7.9e-64 248.1 271 51.7
Nitab4.5_0000160g0140 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.0e-63 247.7 252 56.7
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 1.4e-63 247.3 268 51.9
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 2.6e-62 243.0 270 52.2
Nitab4.5_0003520g0020 Nicotiana tabacum HOM05D003812 ORTHO05D004393 3.7e-61 239.2 257 53.3
Cc06_g19250 Coffea canephora HOM05D003812 ORTHO05D004393 1.4e-60 237.3 269 52.4
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 3.1e-60 236.1 255 52.5
HanXRQChr05g0135721 Helianthus annuus HOM05D003812 ORTHO05D004393 2.6e-59 233.0 256 50.8
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 3.4e-59 232.6 245 54.3
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 1.3e-58 230.7 259 51.7
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 1.3e-58 230.7 259 51.7
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 1.7e-58 230.3 258 51.2
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 8.5e-58 228.0 272 47.8
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 1.9e-57 226.9 273 49.1
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 3.2e-57 226.1 271 48.7
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 3.6e-56 222.6 272 47.8
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 4.7e-56 222.2 267 47.9
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 7.9e-56 221.5 271 48.0
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 2.3e-55 219.9 264 48.9
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 8.8e-55 218.0 269 47.2
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 1.1e-54 217.6 268 43.3
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 1.1e-54 217.6 267 46.4
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 1.1e-54 217.6 267 47.6
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 1.5e-54 217.2 268 42.9
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 1.5e-54 217.2 267 46.4
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 3.3e-54 216.1 267 42.3
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 1.3e-53 214.2 267 43.8
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 3.7e-53 212.6 264 43.9
Carub.0005s1566 Capsella rubella HOM05D003812 ORTHO05D004393 3.7e-53 212.6 268 40.7
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 3.7e-53 212.6 267 46.4
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 8.2e-53 211.5 267 45.3
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 1.4e-52 210.7 270 45.6
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 1.4e-52 210.7 267 44.9
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 5.3e-52 208.8 267 41.2
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 5.3e-52 208.8 273 47.6
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 9.1e-52 208.0 254 44.9
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 2.9e-50 203.0 270 44.8
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 3.8e-50 202.6 268 43.7
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 6.5e-50 201.8 275 45.1
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 8.5e-50 201.4 252 45.2
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 1.1e-49 201.1 265 41.9
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 2.5e-49 199.9 254 42.1
Oeu064436.1 Olea europaea HOM05D003812 ORTHO05D004393 3.2e-49 199.5 185 61.6
CSS0023461 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 7.2e-49 198.4 185 59.5
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 1.6e-48 197.2 269 40.9
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 2.1e-48 196.8 268 44.4
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 2.7e-48 196.4 255 42.4
CSS0048962 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 8.0e-48 194.9 185 58.9
CSS0002491 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 5.2e-47 192.2 185 58.4
CSS0006626 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 5.2e-47 192.2 185 58.4
CSS0008525 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 5.2e-47 192.2 185 58.4
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 6.7e-47 191.8 253 44.7
CSS0001518 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.2e-46 191.0 185 57.8
CSS0030669 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.5e-46 190.7 185 56.2
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 2.6e-46 189.9 251 47.0
ATR0580G406 Amborella trichopoda HOM05D003812 ORTHO05D004393 7.5e-46 188.3 253 45.8
BolC2t12088H Brassica oleracea HOM05D003812 ORTHO05D004393 5.9e-43 178.7 270 41.5
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 7.7e-43 178.3 267 41.6
Pp3c16_3240 Physcomitrium patens HOM05D003812 ORTHO05D004393 1.0e-42 177.9 268 39.9
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 4.2e-41 172.6 326 35.6
BcaB01g00718 Brassica carinata HOM05D003812 ORTHO05D004393 1.2e-40 171.0 270 41.5
HPP92_018576 Vanilla planifolia HOM05D003812 ORTHO05D004393 2.7e-40 169.9 264 40.5
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 6.1e-40 168.7 216 49.1
SMO367G0920 Selaginella moellendorffii HOM05D003812 ORTHO05D004393 1.0e-39 167.9 226 44.7
Ah.13g073190 Amaranthus hybridus HOM05D003812 ORTHO05D004393 3.0e-39 166.4 187 51.9
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 2.0e-38 163.7 266 38.7
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 5.7e-38 162.2 251 42.6
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 1.7e-34 150.6 231 41.1
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 6.5e-34 148.7 267 36.3
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 6.5e-34 148.7 163 52.8
SEGI_23375 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 6.5e-34 148.7 191 49.2
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 2.1e-32 143.7 100 70.0
CSS0036967 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.8e-31 140.6 185 48.6
VMungo1268G0001 Vigna mungo HOM05D003812 ORTHO05D004393 4.0e-31 139.4 230 43.0
SHI01261 Sapria himalayana HOM05D003812 ORTHO05D004393 2.8e-29 133.3 168 48.2
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 8.3e-29 131.7 251 34.7
Nitab4.5_0001168g0120 Nicotiana tabacum HOM05D003812 ORTHO05D004393 8.0e-24 115.2 188 41.0
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 2.2e-21 107.1 100 55.0
arahy.Tifrunner.gnm1.ann1.05VQ85 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.8e-20 104.0 79 62.0
Haze_11133 Corylus avellana HOM05D003812 ORTHO05D004393 9.2e-20 101.7 153 43.1
Os01g0528000 Oryza sativa ssp. japonica HOM05D003812 ORTHO05D004393 1.3e-18 97.8 79 60.8
CBR_g26464 Chara braunii HOM05D003812 ORTHO05D004393 5.8e-14 82.4 378 23.3
vmacro06690 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 3.2e-12 76.6 56 62.5
SEGI_03594 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 1.5e-09 67.8 45 68.9
Sc25g0002350 Simmondsia chinensis HOM05D003812 ORTHO05D004393 4.7e-08 62.8 47 61.7
AUR62002481 Chenopodium quinoa HOM05D003812 ORTHO05D004393 8.1e-08 62.0 82 46.3
FAN20G1426 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.4e-07 61.2 135 38.5
FvH4_2g23680 Fragaria vesca HOM05D003812 ORTHO05D004393 2.6e-06 57.0 138 34.8


User provided reference genes

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