Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 3.6e-50 201.4 113 100.0
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 4.0e-33 144.8 114 76.3
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 2.6e-32 142.1 113 71.7
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 4.9e-31 137.9 110 70.0
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 2.4e-30 135.6 113 71.7
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 2.4e-30 135.6 113 71.7
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 2.4e-30 135.6 113 69.9
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 1.7e-28 129.4 114 67.5
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 6.6e-28 127.5 116 62.9
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 8.6e-28 127.1 116 62.9
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 8.6e-28 127.1 116 62.9
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 8.6e-28 127.1 109 65.1
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 1.5e-27 126.3 112 65.2
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 2.5e-27 125.6 114 64.9
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 3.3e-27 125.2 116 66.4
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 4.3e-27 124.8 115 67.0
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 4.3e-27 124.8 114 68.4
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 7.3e-27 124.0 116 66.4
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 7.3e-27 124.0 112 65.2
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 1.6e-26 122.9 116 64.7
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 2.8e-26 122.1 113 64.6
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 3.6e-26 121.7 114 64.9
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 3.6e-26 121.7 113 68.1
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 8.0e-26 120.6 112 61.6
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 8.0e-26 120.6 108 62.0
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 2.3e-25 119.0 113 67.3
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 2.3e-25 119.0 113 67.3
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 3.0e-25 118.6 113 62.8
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 3.0e-25 118.6 115 64.3
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 3.0e-25 118.6 115 61.7
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 4.0e-25 118.2 113 62.8
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 2.6e-24 115.5 114 61.4
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 2.6e-24 115.5 99 69.7
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 2.6e-24 115.5 118 61.9
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 7.5e-24 114.0 117 59.8
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 7.5e-24 114.0 117 59.8
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 9.8e-24 113.6 113 62.8
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 1.3e-23 113.2 116 62.1
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 2.2e-23 112.5 115 63.5
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 2.2e-23 112.5 115 61.7
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 2.9e-23 112.1 116 61.2
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 2.9e-23 112.1 116 60.3
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 2.9e-23 112.1 120 58.3
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 6.4e-23 110.9 113 59.3
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 8.3e-23 110.5 117 59.8
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 1.4e-22 109.8 109 62.4
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 1.8e-22 109.4 114 58.8
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 2.4e-22 109.0 115 59.1
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 3.2e-22 108.6 110 60.9
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 3.2e-22 108.6 112 58.9
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 4.1e-22 108.2 115 60.0
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 4.1e-22 108.2 109 58.7
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 5.4e-22 107.8 113 61.1
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 9.2e-22 107.1 112 59.8
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 9.2e-22 107.1 125 56.0
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 1.2e-21 106.7 118 60.2
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 1.2e-21 106.7 110 59.1
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 1.2e-21 106.7 117 61.5
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 1.6e-21 106.3 110 60.9
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 1.6e-21 106.3 111 60.4
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 2.0e-21 105.9 117 62.4
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 2.7e-21 105.5 115 56.5
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 3.5e-21 105.1 118 59.3
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 3.5e-21 105.1 118 59.3
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 3.5e-21 105.1 114 56.1
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 3.5e-21 105.1 113 57.5
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 4.6e-21 104.8 117 63.2
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 4.6e-21 104.8 111 58.6
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 5.9e-21 104.4 117 57.3
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 5.9e-21 104.4 118 56.8
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 7.8e-21 104.0 114 56.1
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 1.0e-20 103.6 114 54.4
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 2.3e-20 102.4 108 55.6
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 3.0e-20 102.1 112 55.4
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 3.9e-20 101.7 116 57.8
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 3.9e-20 101.7 117 59.8
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 3.9e-20 101.7 113 57.5
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 3.9e-20 101.7 118 60.2
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 1.1e-19 100.1 114 55.3
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 1.5e-19 99.8 117 57.3
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 1.9e-19 99.4 111 52.3
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 2.5e-19 99.0 111 51.4
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 2.1e-18 95.9 107 57.9
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 2.8e-18 95.5 104 54.8
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 3.6e-18 95.1 111 58.6
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 6.2e-18 94.4 146 47.9
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 8.0e-18 94.0 111 57.7
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 1.1e-17 93.6 117 53.0
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 1.4e-17 93.2 114 53.5
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 1.4e-17 93.2 110 55.5
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.3e-17 92.4 116 49.1
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 2.3e-17 92.4 79 67.1
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 3.1e-17 92.0 113 53.1
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 4.0e-17 91.7 116 49.1
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 5.2e-17 91.3 121 52.1
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 5.2e-17 91.3 117 53.0
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 5.2e-17 91.3 117 53.0
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 6.8e-17 90.9 118 52.5
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 6.8e-17 90.9 118 52.5
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 6.8e-17 90.9 118 52.5
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 6.8e-17 90.9 119 51.3
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 6.8e-17 90.9 119 53.8
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 8.9e-17 90.5 110 54.5
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 1.5e-16 89.7 113 53.1
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 1.5e-16 89.7 113 52.2
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 9.8e-16 87.0 114 50.0
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 9.8e-16 87.0 114 50.0
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 9.8e-16 87.0 114 50.0
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 9.8e-16 87.0 115 51.3
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 1.7e-15 86.3 110 57.3
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 1.7e-15 86.3 110 58.2
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 2.2e-15 85.9 115 51.3
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 2.2e-15 85.9 108 52.8
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 3.7e-15 85.1 115 49.6
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 1.4e-14 83.2 86 59.3
FAN25G2937 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.4e-14 83.2 81 59.3
Zm00001eb416000 Zea mays HOM05D004934 ORTHO05D005924 3.2e-14 82.0 83 59.0
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 4.1e-14 81.6 109 47.7
Zm00001eb343400 Zea mays HOM05D004934 ORTHO05D005924 4.1e-14 81.6 83 57.8
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 2.0e-13 79.3 108 48.1
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 2.7e-13 79.0 113 49.6
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 4.6e-13 78.2 116 50.0
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 1.3e-12 76.6 116 48.3
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 1.1e-11 73.6 116 45.7
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 1.1e-11 73.6 110 45.5
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 4.3e-11 71.6 66 69.7
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 4.3e-11 71.6 119 44.5
HPP92_003219 Vanilla planifolia HOM05D004934 ORTHO05D005924 5.6e-11 71.2 77 58.4
Hma1.2p1_0413F.1_g147325 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 1.2e-10 70.1 65 56.9
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 2.1e-10 69.3 102 47.1
Hma1.2p1_0587F.1_g184260 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 2.8e-10 68.9 64 56.2
Hma1.2p1_3516F.1_g336514 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 2.8e-10 68.9 64 56.2
Os09g0568900 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 1.8e-09 66.2 78 52.6
Pp3c1_22500 Physcomitrium patens HOM05D004934 ORTHO05D005924 2.3e-09 65.9 109 40.4
Cpa.g.sc32.36 Carica papaya HOM05D004934 ORTHO05D005924 1.2e-08 63.5 71 52.1
Gohir.A05G080000 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.5e-08 63.2 81 54.3
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 2.0e-08 62.8 44 79.5
FAN21G3762 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.6e-08 62.4 73 56.2
Gohir.D05G082900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.3e-07 60.1 81 53.1
Gorai.009G084700 Gossypium raimondii HOM05D004934 ORTHO05D005924 1.3e-07 60.1 81 53.1
MELO3C004698.2 Cucumis melo HOM05D004934 ORTHO05D005924 2.2e-07 59.3 100 42.0
ECA238G4733 Erigeron canadensis HOM05D004934 ORTHO05D005924 4.9e-07 58.2 112 40.2
AagrBONN_evm.TU.Sc2ySwM_228.2259 Anthoceros agrestis HOM05D004934 ORTHO05D005924 2.4e-06 55.8 105 39.0
vmacro03322 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 2.4e-06 55.8 188 31.9


User provided reference genes

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