Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G0884 Trochodendron aralioides HOM05D004409 ORTHO05D005292 6.0e-61 237.3 115 100.0
Dinv28881 Davidia involucrata HOM05D004409 ORTHO05D005292 2.5e-43 178.7 112 74.1
Potri.003G084000 Populus trichocarpa HOM05D004409 ORTHO05D005292 5.3e-41 171.0 111 70.3
Actinidia10866 Actinidia chinensis HOM05D004409 ORTHO05D005292 5.8e-40 167.5 111 68.5
Duzib205G0528 Durio zibethinus HOM05D004409 ORTHO05D005292 2.9e-39 165.2 111 65.8
Actinidia31492 Actinidia chinensis HOM05D004409 ORTHO05D005292 4.9e-39 164.5 108 72.2
GSVIVG01004835001 Vitis vinifera HOM05D004409 ORTHO05D005292 6.4e-39 164.1 111 65.8
Atru.chr9.1197 Acer truncatum HOM05D004409 ORTHO05D005292 1.4e-38 162.9 113 67.3
Sabra03G0054600 Salix brachista HOM05D004409 ORTHO05D005292 1.4e-38 162.9 111 67.6
Thecc.03G239100 Theobroma cacao HOM05D004409 ORTHO05D005292 1.2e-37 159.8 112 64.3
TWI60G0543 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 1.2e-37 159.8 103 67.0
Ciclev10022946m.g Citrus clementina HOM05D004409 ORTHO05D005292 2.1e-37 159.1 105 71.4
Nitab4.5_0000185g0190 Nicotiana tabacum HOM05D004409 ORTHO05D005292 1.8e-36 156.0 110 63.6
Duzib068G1042 Durio zibethinus HOM05D004409 ORTHO05D005292 3.0e-36 155.2 111 63.1
CSS0044628 Camellia sinensis var. sinensis HOM05D004409 ORTHO05D005292 3.9e-36 154.8 107 68.2
Prupe.5G054600 Prunus persica HOM05D004409 ORTHO05D005292 1.1e-35 153.3 118 70.3
QL12p008592 Quercus lobata HOM05D004409 ORTHO05D005292 7.4e-35 150.6 114 69.3
Peaxi162Scf00102g00085 Petunia axillaris HOM05D004409 ORTHO05D005292 2.8e-34 148.7 108 64.8
Aqoxy3G02644 Aquilegia oxysepala HOM05D004409 ORTHO05D005292 3.7e-34 148.3 93 67.7
Gorai.008G230500 Gossypium raimondii HOM05D004409 ORTHO05D005292 3.7e-34 148.3 102 63.7
Gohir.A12G212400 Gossypium hirsutum HOM05D004409 ORTHO05D005292 4.8e-34 147.9 102 63.7
Manes.01G089900 Manihot esculenta HOM05D004409 ORTHO05D005292 4.8e-34 147.9 116 61.2
Gohir.D12G214900 Gossypium hirsutum HOM05D004409 ORTHO05D005292 6.2e-34 147.5 102 63.7
Hma1.2p1_3159F.1_g333389 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 1.8e-33 146.0 102 64.7
Haze_08359 Corylus avellana HOM05D004409 ORTHO05D005292 3.1e-33 145.2 98 74.5
ECA240G1407 Erigeron canadensis HOM05D004409 ORTHO05D005292 1.5e-32 142.9 86 73.3
GSVIVG01004822001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.5e-32 142.9 100 60.0
GSVIVG01004827001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.5e-32 142.9 100 60.0
Duzib068G0789 Durio zibethinus HOM05D004409 ORTHO05D005292 2.0e-32 142.5 105 61.9
TAR375G0484 Trochodendron aralioides HOM05D004409 ORTHO05D005292 2.6e-32 142.1 113 57.5
COL.COLO4_06685 Corchorus olitorius HOM05D004409 ORTHO05D005292 4.5e-32 141.4 98 64.3
Dinv28880 Davidia involucrata HOM05D001887 ORTHO05D003756 1.0e-31 140.2 107 61.7
Cfa012334 Carpinus fangiana HOM05D004409 ORTHO05D005292 2.9e-31 138.7 104 65.4
Thecc.03G144800 Theobroma cacao HOM05D004409 ORTHO05D005292 3.8e-31 138.3 112 59.8
Cfa012333 Carpinus fangiana HOM05D004409 ORTHO05D005292 4.9e-31 137.9 108 63.0
COL.COLO4_37301 Corchorus olitorius HOM05D004409 ORTHO05D005292 6.5e-31 137.5 110 61.8
TAR636G0767 Trochodendron aralioides HOM05D004409 ORTHO05D005292 8.4e-31 137.1 69 95.7
THA.LOC104809923 Tarenaya hassleriana HOM05D004409 ORTHO05D005292 1.1e-30 136.7 113 57.5
Cc08_g11210 Coffea canephora HOM05D004409 ORTHO05D005292 1.4e-30 136.3 107 61.7
Ciclev10030379m.g Citrus clementina HOM05D004409 ORTHO05D005292 1.9e-30 136.0 83 73.5
CANSAT21G0033 Cannabis sativa HOM05D004409 ORTHO05D005292 2.5e-30 135.6 116 54.3
HanXRQChr03g0089681 Helianthus annuus HOM05D004409 ORTHO05D005292 9.3e-30 133.7 100 61.0
CAN.G845.22 Capsicum annuum HOM05D004409 ORTHO05D005292 1.2e-29 133.3 107 52.3
DCAR_008327 Daucus carota HOM05D004409 ORTHO05D005292 1.6e-29 132.9 83 69.9
Atru.chr6.1971 Acer truncatum HOM05D004409 ORTHO05D005292 4.6e-29 131.3 111 59.5
HanXRQChr13g0419061 Helianthus annuus HOM05D004409 ORTHO05D005292 4.6e-29 131.3 106 58.5
Dinv25140 Davidia involucrata HOM05D004409 ORTHO05D005292 1.0e-28 130.2 113 56.6
Thecc.03G144900 Theobroma cacao HOM05D004409 ORTHO05D005292 1.3e-28 129.8 108 57.4
Hma1.2p1_1014F.1_g247850 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 1.8e-28 129.4 106 57.5
Duzib205G0410 Durio zibethinus HOM05D004409 ORTHO05D005292 3.0e-28 128.6 112 58.0
CANSAT21G0737 Cannabis sativa HOM05D004409 ORTHO05D005292 5.1e-28 127.9 105 54.3
GSVIVG01004832001 Vitis vinifera HOM05D004409 ORTHO05D005292 6.7e-28 127.5 88 62.5
Ciclev10022894m.g Citrus clementina HOM05D004409 ORTHO05D005292 8.7e-28 127.1 119 47.9
Thecc.03G144700 Theobroma cacao HOM05D004409 ORTHO05D005292 8.7e-28 127.1 103 57.3
TAR375G0498 Trochodendron aralioides HOM05D004409 ORTHO05D005292 8.7e-28 127.1 113 54.9
Lsat_1_v5_gn_6_94501 Lactuca sativa HOM05D004409 ORTHO05D005292 1.5e-27 126.3 103 56.3
TAR375G0026 Trochodendron aralioides HOM05D004409 ORTHO05D005292 1.9e-27 125.9 113 55.8
GSVIVG01004836001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.9e-27 125.9 115 50.4
MELO3C014170.2 Cucumis melo HOM05D004409 ORTHO05D005292 2.5e-27 125.6 115 53.0
ATR1136G211 Amborella trichopoda HOM05D004409 ORTHO05D005292 3.3e-27 125.2 106 54.7
Hma1.2p1_1014F.1_g247840 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 3.3e-27 125.2 106 56.6
Lsat_1_v5_gn_6_94401 Lactuca sativa HOM05D004409 ORTHO05D005292 3.3e-27 125.2 111 57.7
CsaV3_3G004710 Cucumis sativus L. HOM05D004409 ORTHO05D005292 4.3e-27 124.8 101 58.4
Dinv34530 Davidia involucrata HOM05D004409 ORTHO05D005292 4.3e-27 124.8 111 55.0
HanXRQChr03g0089691 Helianthus annuus HOM05D004409 ORTHO05D005292 4.3e-27 124.8 102 59.8
MELO3C013895.2 Cucumis melo HOM05D004409 ORTHO05D005292 5.7e-27 124.4 111 54.1
Sed0027041 Sechium edule HOM05D004409 ORTHO05D005292 7.4e-27 124.0 111 55.0
TWI39G0310 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 9.6e-27 123.6 108 54.6
Atru.chr9.1196 Acer truncatum HOM05D004409 ORTHO05D005292 1.6e-26 122.9 88 63.6
TWI39G0193 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 1.6e-26 122.9 108 53.7
TWI39G0462 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 2.1e-26 122.5 108 53.7
FAN10G3781 Fragaria x ananassa HOM05D004409 ORTHO05D005292 3.7e-26 121.7 112 50.9
FvH4_7g26400 Fragaria vesca HOM05D004409 ORTHO05D005292 8.2e-26 120.6 112 50.9
DCAR_005587 Daucus carota HOM05D004409 ORTHO05D005292 1.1e-25 120.2 101 54.5
Cc06_g12260 Coffea canephora HOM05D004409 ORTHO05D005292 1.4e-25 119.8 116 50.0
Aqoxy6G00065 Aquilegia oxysepala HOM05D004409 ORTHO05D005292 1.8e-25 119.4 115 46.1
ClCG10G002150 Citrullus lanatus HOM05D004409 ORTHO05D005292 3.1e-25 118.6 96 57.3
COL.COLO4_21695 Corchorus olitorius HOM05D004409 ORTHO05D005292 3.1e-25 118.6 84 65.5
Actinidia01026 Actinidia chinensis HOM05D004409 ORTHO05D005292 4.1e-25 118.2 107 52.3
EL10Ac1g00121 Beta vulgaris HOM05D004409 ORTHO05D005292 6.9e-25 117.5 113 51.3
CsaV3_3G002240 Cucumis sativus L. HOM05D004409 ORTHO05D005292 6.9e-25 117.5 112 50.9
Hund27103 Selenicereus undatus HOM05D004409 ORTHO05D005292 1.2e-24 116.7 121 47.9
TAR375G0880 Trochodendron aralioides HOM05D004409 ORTHO05D005292 1.2e-24 116.7 104 54.8
GSVIVG01024506001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.2e-24 116.7 102 53.9
ECA240G4009 Erigeron canadensis HOM05D004409 ORTHO05D005292 2.0e-24 115.9 91 57.1
HanXRQChr13g0419051 Helianthus annuus HOM05D004409 ORTHO05D005292 2.0e-24 115.9 100 52.0
PGSC0003DMG400026212 Solanum tuberosum HOM05D004409 ORTHO05D005292 2.0e-24 115.9 105 49.5
GSVIVG01013894001 Vitis vinifera HOM05D004409 ORTHO05D005292 4.5e-24 114.8 91 57.1
PGR042G3450 Punica granatum HOM05D004409 ORTHO05D005292 5.9e-24 114.4 121 47.1
GSVIVG01013816001 Vitis vinifera HOM05D004409 ORTHO05D005292 7.6e-24 114.0 91 57.1
ECA240G0589 Erigeron canadensis HOM05D004409 ORTHO05D005292 1.0e-23 113.6 106 49.1
Eucgr.K00114 Eucalyptus grandis HOM05D004409 ORTHO05D005292 1.0e-23 113.6 87 55.2
CAN.G572.17 Capsicum annuum HOM05D004409 ORTHO05D005292 1.3e-23 113.2 95 50.5
PGR142G3629 Punica granatum HOM05D004409 ORTHO05D005292 1.7e-23 112.8 109 51.4
TWI39G0819 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 1.7e-23 112.8 115 50.4
Ciclev10033339m.g Citrus clementina HOM05D004409 ORTHO05D005292 2.9e-23 112.1 84 61.9
Oeu019420.1 Olea europaea HOM05D004409 ORTHO05D005292 3.8e-23 111.7 104 51.0
GSVIVG01013815001 Vitis vinifera HOM05D004409 ORTHO05D005292 3.8e-23 111.7 115 45.2
GSVIVG01024502001 Vitis vinifera HOM05D004409 ORTHO05D005292 6.5e-23 110.9 115 47.8
ATR1136G026 Amborella trichopoda HOM05D004409 ORTHO05D005292 8.4e-23 110.5 106 48.1
Gohir.D13G124300 Gossypium hirsutum HOM05D004409 ORTHO05D005292 8.4e-23 110.5 101 51.5
RcHm_v2.0_Chr1g0372991 Rosa chinensis HOM05D004409 ORTHO05D005292 8.4e-23 110.5 111 46.8
DCAR_003519 Daucus carota HOM05D004409 ORTHO05D005292 1.1e-22 110.2 79 59.5
GSVIVG01004838001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.1e-22 110.2 83 56.6
RcHm_v2.0_Chr1g0372951 Rosa chinensis HOM05D004409 ORTHO05D005292 1.4e-22 109.8 104 50.0
RcHm_v2.0_Chr1g0328141 Rosa chinensis HOM05D004409 ORTHO05D005292 1.9e-22 109.4 111 45.9
RcHm_v2.0_Chr1g0328171 Rosa chinensis HOM05D004409 ORTHO05D005292 1.9e-22 109.4 104 49.0
Actinidia25914 Actinidia chinensis HOM05D004409 ORTHO05D005292 3.2e-22 108.6 112 48.2
Cpa.g.sc13.213 Carica papaya HOM05D004409 ORTHO05D005292 3.2e-22 108.6 110 49.1
COL.COLO4_32251 Corchorus olitorius HOM05D004409 ORTHO05D005292 4.2e-22 108.2 115 46.1
Hma1.2p1_1014F.1_g247830 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 5.5e-22 107.8 98 51.0
CANSAT56G2887 Cannabis sativa HOM05D004409 ORTHO05D005292 9.3e-22 107.1 110 46.4
FAN03G2468 Fragaria x ananassa HOM05D004409 ORTHO05D005292 1.2e-21 106.7 112 50.0
Thecc.08G189000 Theobroma cacao HOM05D004409 ORTHO05D005292 1.2e-21 106.7 105 47.6
COL.COLO4_37302 Corchorus olitorius HOM05D004409 ORTHO05D005292 1.6e-21 106.3 103 48.5
FvH4_7g26430 Fragaria vesca HOM05D004409 ORTHO05D005292 2.1e-21 105.9 102 51.0
FAN10G4140 Fragaria x ananassa HOM05D004409 ORTHO05D005292 3.5e-21 105.1 102 52.0
HanXRQChr13g0418291 Helianthus annuus HOM05D004409 ORTHO05D005292 4.6e-21 104.8 103 49.5
Migut.H01906 Erythranthe guttata HOM05D004409 ORTHO05D005292 7.9e-21 104.0 114 44.7
GSVIVG01013825001 Vitis vinifera HOM05D004409 ORTHO05D005292 7.9e-21 104.0 116 44.0
Peaxi162Scf00391g00715 Petunia axillaris HOM05D004409 ORTHO05D005292 1.3e-20 103.2 83 55.4
Thecc.07G180600 Theobroma cacao HOM05D004409 ORTHO05D005292 1.8e-20 102.8 108 43.5
ATR1136G215 Amborella trichopoda HOM05D004409 ORTHO05D005292 3.0e-20 102.1 105 44.8
MSTRG.27238 Avicennia marina HOM05D004409 ORTHO05D005292 3.0e-20 102.1 111 48.6
Prupe.7G057100 Prunus persica HOM05D004409 ORTHO05D005292 8.7e-20 100.5 112 48.2
FAN17G1151 Fragaria x ananassa HOM05D004409 ORTHO05D005292 1.1e-19 100.1 113 48.7
Migut.H01907 Erythranthe guttata HOM05D004409 ORTHO05D005292 1.5e-19 99.8 113 42.5
Oeu006074.1 Olea europaea HOM05D004409 ORTHO05D005292 1.5e-19 99.8 104 45.2
MD07G1239800 Malus domestica HOM05D004409 ORTHO05D005292 4.3e-19 98.2 108 46.3
FAN01G0604 Fragaria x ananassa HOM05D004409 ORTHO05D005292 7.4e-19 97.4 112 43.8
FAN06G5092 Fragaria x ananassa HOM05D004409 ORTHO05D005292 7.4e-19 97.4 97 49.5
MD07G1239700 Malus domestica HOM05D004409 ORTHO05D005292 1.3e-18 96.7 103 47.6
MD07G1239500 Malus domestica HOM05D004409 ORTHO05D005292 2.8e-18 95.5 98 42.9
CANSAT56G2756 Cannabis sativa HOM05D004409 ORTHO05D005292 3.7e-18 95.1 102 44.1
Ciclev10033338m.g Citrus clementina HOM05D004409 ORTHO05D005292 3.1e-17 92.0 106 46.2
CANSAT56G0658 Cannabis sativa HOM05D004409 ORTHO05D005292 4.1e-17 91.7 111 40.5
CANSAT56G4079 Cannabis sativa HOM05D004409 ORTHO05D005292 4.1e-17 91.7 111 40.5
Oeu056339.1 Olea europaea HOM05D004409 ORTHO05D005292 6.9e-17 90.9 108 42.6
Cfa012335 Carpinus fangiana HOM05D004409 ORTHO05D005292 1.5e-16 89.7 107 45.8
Aa31LG9G14800 Aethionema arabicum HOM05D004409 ORTHO05D005292 3.4e-16 88.6 103 42.7
SGA_v2.0_scaffold91G28102 Striga asiatica HOM05D004409 ORTHO05D005292 3.4e-16 88.6 108 45.4
THA.LOC104816486 Tarenaya hassleriana HOM05D004409 ORTHO05D005292 4.5e-16 88.2 105 42.9
BcaC01g03728 Brassica carinata HOM05D004409 ORTHO05D005292 1.7e-15 86.3 101 43.6
Eucgr.K00115 Eucalyptus grandis HOM05D004409 ORTHO05D005292 2.9e-15 85.5 120 43.3
BcaB04g18966 Brassica carinata HOM05D004409 ORTHO05D005292 8.5e-15 84.0 101 41.6
Sp6g08250 Schrenkiella parvula HOM05D004409 ORTHO05D005292 8.5e-15 84.0 101 40.6
Migut.J00932 Erythranthe guttata HOM05D004409 ORTHO05D005292 1.9e-14 82.8 101 42.6
A03p40420 Brassica napus HOM05D004409 ORTHO05D005292 2.1e-13 79.3 96 41.7
C03p49230 Brassica napus HOM05D004409 ORTHO05D005292 2.1e-13 79.3 98 39.8
BolC3t17205H Brassica oleracea HOM05D004409 ORTHO05D005292 2.1e-13 79.3 96 41.7
BraA03t13197Z Brassica rapa HOM05D004409 ORTHO05D005292 2.1e-13 79.3 96 41.7
ATR0745G048 Amborella trichopoda HOM05D004409 ORTHO05D005292 3.6e-13 78.6 103 38.8
CAN.G572.18 Capsicum annuum HOM05D004409 ORTHO05D005292 1.0e-12 77.0 99 35.4
Gorai.013G138900 Gossypium raimondii HOM05D004409 ORTHO05D005292 9.7e-11 70.5 63 52.4
C09p37510 Brassica napus HOM05D004489 ORTHO05D032456 2.6e-08 62.4 101 36.6
BolC9t56581H Brassica oleracea HOM05D004489 ORTHO05D032456 2.6e-08 62.4 101 36.6
BcaC04g20961 Brassica carinata HOM05D004489 ORTHO05D032456 1.0e-07 60.5 100 36.0
MD02G1296300 Malus domestica HOM05D002739 ORTHO05D002877 1.0e-07 60.5 57 40.4
Nn7g36459 Nelumbo nucifera HOM05D002739 ORTHO05D002877 1.7e-07 59.7 58 41.4
FAN10G1712 Fragaria x ananassa HOM05D002739 ORTHO05D002877 2.9e-07 58.9 108 25.9
FvH4_7g02210 Fragaria vesca HOM05D002739 ORTHO05D002877 5.0e-07 58.2 108 26.9
PSO339G0161 Papaver somniferum HOM05D002739 ORTHO05D002877 1.1e-06 57.0 86 31.4
Prupe.2G028300 Prunus persica HOM05D002739 ORTHO05D002877 1.1e-06 57.0 57 40.4
FvH4_3g29300 Fragaria vesca HOM05D002739 ORTHO05D002877 1.9e-06 56.2 108 27.8
Potri.001G023300 Populus trichocarpa HOM05D002739 ORTHO05D002877 2.5e-06 55.8 110 28.2
AT5G56480 Arabidopsis thaliana HOM05D002739 ORTHO05D002877 4.2e-06 55.1 92 26.1
Aa31sc407G10 Aethionema arabicum HOM05D002739 ORTHO05D002877 5.5e-06 54.7 57 36.8
Nn2g15045 Nelumbo nucifera HOM05D002739 ORTHO05D002877 5.5e-06 54.7 86 30.2
RcHm_v2.0_Chr7g0218541 Rosa chinensis HOM05D002739 ORTHO05D002877 9.4e-06 53.9 104 26.0
THA.LOC104826487 Tarenaya hassleriana HOM05D002739 ORTHO05D002877 9.4e-06 53.9 57 29.8


User provided reference genes

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