Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G0814 Trochodendron aralioides HOM05D005211 ORTHO05D006148 3.0e-79 298.5 156 100.0
TAR365G0119 Trochodendron aralioides HOM05D005211 ORTHO05D006148 8.1e-53 210.7 156 73.1
TAR633G2277 Trochodendron aralioides HOM05D005211 ORTHO05D006148 7.4e-38 161.0 146 65.8
Nn1g08305 Nelumbo nucifera HOM05D005211 ORTHO05D006148 3.7e-37 158.7 156 60.9
QL10p044103 Quercus lobata HOM05D005211 ORTHO05D006148 1.2e-35 153.7 154 56.5
Cfa008551 Carpinus fangiana HOM05D005211 ORTHO05D006148 2.7e-32 142.5 156 53.8
Prupe.8G190100 Prunus persica HOM05D005211 ORTHO05D006148 1.0e-31 140.6 155 52.3
Oeu003658.1 Olea europaea HOM05D005211 ORTHO05D006148 1.4e-31 140.2 158 50.6
CiPaw.01G108100 Carya illinoinensis HOM05D005211 ORTHO05D006148 2.3e-31 139.4 155 53.5
Gohir.A07G196700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 2.3e-31 139.4 168 54.8
Gohir.D07G203100 Gossypium hirsutum HOM05D005211 ORTHO05D006148 3.0e-31 139.0 163 54.0
Gorai.001G228500 Gossypium raimondii HOM05D005211 ORTHO05D006148 3.0e-31 139.0 168 55.4
Duzib133G1390 Durio zibethinus HOM05D005211 ORTHO05D006148 1.1e-30 137.1 166 53.6
COL.COLO4_26568 Corchorus olitorius HOM05D005211 ORTHO05D006148 3.3e-30 135.6 156 51.9
Duzib138G1875 Durio zibethinus HOM05D005211 ORTHO05D006148 5.7e-30 134.8 165 52.1
Duzib211G0461 Durio zibethinus HOM05D005211 ORTHO05D006148 5.7e-30 134.8 169 53.8
Sabra14G0113200 Salix brachista HOM05D005211 ORTHO05D006148 5.7e-30 134.8 152 52.6
Manes.13G054600 Manihot esculenta HOM05D005211 ORTHO05D006148 7.4e-30 134.4 167 48.5
CSS0012153 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 1.7e-29 133.3 157 56.7
CSS0028586 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 1.7e-29 133.3 157 56.7
CiPaw.02G059600 Carya illinoinensis HOM05D005211 ORTHO05D006148 1.7e-29 133.3 146 50.7
MBI07_g35368_MAGBIO Magnolia biondii HOM05D005211 ORTHO05D006148 1.7e-29 133.3 136 61.0
Potri.002G232500 Populus trichocarpa HOM05D005211 ORTHO05D006148 3.7e-29 132.1 159 52.8
Aqoxy2G03955 Aquilegia oxysepala HOM05D005211 ORTHO05D006148 8.2e-29 131.0 152 50.7
Cpa.g.sc8.70 Carica papaya HOM05D005211 ORTHO05D006148 8.2e-29 131.0 160 51.2
Gohir.A11G142700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 8.2e-29 131.0 172 48.8
Gohir.D11G149000 Gossypium hirsutum HOM05D005211 ORTHO05D006148 1.8e-28 129.8 172 48.8
Gorai.007G159800 Gossypium raimondii HOM05D005211 ORTHO05D006148 2.4e-28 129.4 172 48.3
CiPaw.13G055500 Carya illinoinensis HOM05D005211 ORTHO05D006148 4.1e-28 128.6 157 56.1
CiPaw.14G044000 Carya illinoinensis HOM05D005211 ORTHO05D006148 4.1e-28 128.6 155 51.6
Eucgr.H00724 Eucalyptus grandis HOM05D005211 ORTHO05D006148 4.1e-28 128.6 160 49.4
MD10G1151700 Malus domestica HOM05D005211 ORTHO05D006148 4.1e-28 128.6 153 49.7
Lj1P101T27 Lonicera japonica HOM05D005211 ORTHO05D006148 9.1e-28 127.5 156 48.7
MD05G1158800 Malus domestica HOM05D005211 ORTHO05D006148 9.1e-28 127.5 155 49.0
Oeu057829.1 Olea europaea HOM05D005211 ORTHO05D006148 1.5e-27 126.7 150 48.7
Potri.014G149800 Populus trichocarpa HOM05D005211 ORTHO05D006148 1.5e-27 126.7 166 49.4
RcHm_v2.0_Chr6g0282791 Rosa chinensis HOM05D005211 ORTHO05D006148 1.5e-27 126.7 163 50.3
Haze_11077 Corylus avellana HOM05D005211 ORTHO05D006148 2.0e-27 126.3 133 54.1
Eucgr.H00442 Eucalyptus grandis HOM05D005211 ORTHO05D006148 2.0e-27 126.3 147 48.3
Lj2P1117T13 Lonicera japonica HOM05D005211 ORTHO05D006148 2.0e-27 126.3 158 46.2
Sabra02G0177300 Salix brachista HOM05D005211 ORTHO05D006148 3.4e-27 125.6 147 53.1
EL10Ac5g10623 Beta vulgaris HOM05D005211 ORTHO05D006148 1.0e-26 124.0 158 46.8
FAN27G1389 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.3e-26 123.6 155 51.0
TWI36G1602 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 1.3e-26 123.6 151 52.3
FAN24G3081 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.7e-26 123.2 169 49.1
FvH4_2g17750 Fragaria vesca HOM05D005211 ORTHO05D006148 2.2e-26 122.9 169 49.1
FAN15G0641 Fragaria x ananassa HOM05D005211 ORTHO05D006148 3.8e-26 122.1 168 47.0
TWI18G0981 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 5.0e-26 121.7 142 47.9
QL93p0263_0042 Quercus lobata HOM05D005211 ORTHO05D006148 1.1e-25 120.6 141 55.3
Cc01_g16110 Coffea canephora HOM05D005211 ORTHO05D006148 2.5e-25 119.4 152 48.7
Thecc.01G210700 Theobroma cacao HOM05D005211 ORTHO05D006148 3.2e-25 119.0 158 51.9
PSO675G5714 Papaver somniferum HOM05D005211 ORTHO05D006148 4.2e-25 118.6 172 47.1
FAN07G0144 Fragaria x ananassa HOM05D005211 ORTHO05D006148 9.4e-25 117.5 147 46.3
PGR083G0764 Punica granatum HOM05D005211 ORTHO05D006148 9.4e-25 117.5 152 47.4
FAN22G0070 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.6e-24 116.7 147 45.6
Oeu013415.1 Olea europaea HOM05D005211 ORTHO05D006148 2.1e-24 116.3 158 46.8
Dinv28809 Davidia involucrata HOM05D005211 ORTHO05D006148 2.7e-24 115.9 156 51.3
RcHm_v2.0_Chr6g0282781 Rosa chinensis HOM05D005211 ORTHO05D006148 2.7e-24 115.9 159 47.8
Sc17g0001650 Simmondsia chinensis HOM05D005211 ORTHO05D006148 4.7e-24 115.2 145 51.7
Manes.11G114000 Manihot esculenta HOM05D005211 ORTHO05D006148 6.1e-24 114.8 145 48.3
RcHm_v2.0_Chr4g0409781 Rosa chinensis HOM05D005211 ORTHO05D006148 6.1e-24 114.8 147 46.3
FAN12G3367 Fragaria x ananassa HOM05D005211 ORTHO05D006148 7.9e-24 114.4 147 44.9
FAN24G0649 Fragaria x ananassa HOM05D005211 ORTHO05D006148 7.9e-24 114.4 164 44.5
Ciclev10016996m.g Citrus clementina HOM05D005211 ORTHO05D006148 1.4e-23 113.6 165 45.5
FAN12G0052 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.4e-23 113.6 147 44.9
FAN27G2625 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.8e-23 113.2 164 43.9
Manes.12G059000 Manihot esculenta HOM05D005211 ORTHO05D006148 8.8e-23 110.9 121 53.7
CDE02G4090 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 1.1e-22 110.5 146 47.9
QL09p046680 Quercus lobata HOM05D005211 ORTHO05D006148 1.1e-22 110.5 141 53.2
Actinidia23357 Actinidia chinensis HOM05D005211 ORTHO05D006148 1.5e-22 110.2 138 47.8
MELO3C026134.2 Cucumis melo HOM05D005211 ORTHO05D006148 2.6e-22 109.4 145 44.1
MD05G1158700 Malus domestica HOM05D005211 ORTHO05D006148 4.4e-22 108.6 154 43.5
Prupe.8G190000 Prunus persica HOM05D005211 ORTHO05D006148 4.4e-22 108.6 145 49.7
CANSAT01G0934 Cannabis sativa HOM05D005211 ORTHO05D006148 5.7e-22 108.2 165 44.2
CDE07G0882 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 4.8e-21 105.1 152 46.7
FvH4_2g17760 Fragaria vesca HOM05D005211 ORTHO05D006148 8.2e-21 104.4 152 44.7
PGSC0003DMG400005560 Solanum tuberosum HOM05D005211 ORTHO05D006148 8.2e-21 104.4 151 45.0
PGR142G0694 Punica granatum HOM05D005211 ORTHO05D006148 1.1e-20 104.0 161 44.7
Sed0015684 Sechium edule HOM05D005211 ORTHO05D006148 1.4e-20 103.6 161 39.8
Prupe.1G178500 Prunus persica HOM05D005211 ORTHO05D006148 3.1e-20 102.4 154 42.2
CANSAT78G0009 Cannabis sativa HOM05D005211 ORTHO05D006148 5.3e-20 101.7 174 39.7
DCAR_004769 Daucus carota HOM05D005211 ORTHO05D006148 1.2e-19 100.5 145 44.8
vmacro02818 Vaccinium macrocarpon HOM05D005211 ORTHO05D006148 1.2e-19 100.5 152 43.4
Hma1.2p1_0412F.1_g147140 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 1.5e-19 100.1 111 51.4
ClCG08G003780 Citrullus lanatus HOM05D005211 ORTHO05D006148 2.0e-19 99.8 146 40.4
Lsat_1_v5_gn_5_178301 Lactuca sativa HOM05D005211 ORTHO05D006148 5.9e-19 98.2 172 39.0
CDE09G1368 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 7.7e-19 97.8 140 47.9
MD10G1151600 Malus domestica HOM05D005211 ORTHO05D006148 1.0e-18 97.4 177 39.5
AUR62028696 Chenopodium quinoa HOM05D005211 ORTHO05D006148 1.3e-18 97.1 144 45.1
Hma1.2p1_0959F.1_g241620 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 1.3e-18 97.1 118 48.3
Migut.D00738 Erythranthe guttata HOM05D005211 ORTHO05D006148 2.2e-18 96.3 158 43.7
TWI63G1319 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 2.2e-18 96.3 147 43.5
SGA_v2.0_scaffold77G25295 Striga asiatica HOM05D005211 ORTHO05D006148 2.9e-18 95.9 149 43.0
ATR0686G247 Amborella trichopoda HOM05D005211 ORTHO05D006148 3.8e-18 95.5 142 41.5
CDE04G3135 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 6.5e-18 94.7 152 43.4
Oeu049588.1 Olea europaea HOM05D005211 ORTHO05D006148 1.9e-17 93.2 101 51.5
FAN22G0040 Fragaria x ananassa HOM05D005211 ORTHO05D006148 3.2e-17 92.4 102 50.0
Migut.N00665 Erythranthe guttata HOM05D005211 ORTHO05D006148 4.2e-17 92.0 146 43.2
Rhsim13G0052900 Rhododendron simsii HOM05D005211 ORTHO05D006148 7.2e-17 91.3 128 46.1
Dinv10443 Davidia involucrata HOM05D005211 ORTHO05D006148 4.7e-16 88.6 161 43.5
MSTRG.18497 Avicennia marina HOM05D005211 ORTHO05D006148 1.0e-15 87.4 153 41.8
HPP92_023344 Vanilla planifolia HOM05D005211 ORTHO05D006148 1.4e-15 87.0 143 42.7
ECA247G2119 Erigeron canadensis HOM05D005211 ORTHO05D006148 5.2e-15 85.1 116 44.0
Solyc12g042010.1 Solanum lycopersicum HOM05D005211 ORTHO05D006148 1.5e-14 83.6 143 41.3
CSS0032639 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 2.0e-14 83.2 98 51.0
CsaV3_6G003020 Cucumis sativus L. HOM05D005211 ORTHO05D006148 2.0e-14 83.2 102 45.1
Gohir.D07G167400 Gossypium hirsutum HOM05D005211 ORTHO05D006148 2.6e-14 82.8 101 49.5
HanXRQChr01g0007251 Helianthus annuus HOM05D005211 ORTHO05D006148 3.3e-14 82.4 157 38.9
Peaxi162Scf00335g00067 Petunia axillaris HOM05D005211 ORTHO05D006148 4.4e-14 82.0 87 54.0
Gorai.N002800 Gossypium raimondii HOM05D005211 ORTHO05D006148 7.4e-14 81.3 138 44.2
Gohir.A07G159000 Gossypium hirsutum HOM05D005211 ORTHO05D006148 9.7e-14 80.9 138 44.2
Atru.chr6.3543 Acer truncatum HOM05D005211 ORTHO05D006148 1.7e-13 80.1 156 41.0
Nitab4.5_0004516g0010 Nicotiana tabacum HOM05D005211 ORTHO05D006148 6.3e-13 78.2 85 54.1
Sopen09g012960 Solanum pennellii HOM05D005211 ORTHO05D006148 8.2e-13 77.8 113 44.2
FAN15G2376 Fragaria x ananassa HOM05D005211 ORTHO05D006148 4.1e-12 75.5 100 44.0
Ah.11g050990 Amaranthus hybridus HOM05D005211 ORTHO05D006148 5.3e-12 75.1 119 41.2
unitig_52.g17443 Utricularia gibba HOM05D005211 ORTHO05D006148 5.3e-12 75.1 150 38.0
Actinidia30014 Actinidia chinensis HOM05D005211 ORTHO05D006148 7.0e-12 74.7 91 48.4
Aa31LG1G24830 Aethionema arabicum HOM05D005211 ORTHO05D006148 1.2e-11 73.9 142 40.1
THA.LOC104803428 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 2.6e-11 72.8 159 39.0
unitig_0.g414 Utricularia gibba HOM05D005211 ORTHO05D006148 3.5e-11 72.4 141 39.0
AL4G41710 Arabidopsis lyrata HOM05D005211 ORTHO05D006148 7.7e-11 71.2 147 42.9
AT2G43060 Arabidopsis thaliana HOM05D005211 ORTHO05D006148 7.7e-11 71.2 143 40.6
Os04g0660100 Oryza sativa ssp. japonica HOM05D005211 ORTHO05D006148 7.7e-11 71.2 163 33.7
Carub.0004s2554 Capsella rubella HOM05D005211 ORTHO05D006148 2.9e-10 69.3 148 38.5
THA.LOC104802290 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 2.9e-10 69.3 155 36.8
BcaNung03535 Brassica carinata HOM05D005211 ORTHO05D006148 8.5e-10 67.8 142 39.4
CARHR138130 Cardamine hirsuta HOM05D005211 ORTHO05D006148 1.5e-09 67.0 148 37.2
Thhalv10017615m.g Eutrema salsugineum HOM05D005211 ORTHO05D006148 1.9e-09 66.6 139 38.8
Sp4g25190 Schrenkiella parvula HOM05D005211 ORTHO05D006148 2.5e-09 66.2 151 39.1
BcaB06g29284 Brassica carinata HOM05D005211 ORTHO05D006148 3.2e-09 65.9 145 39.3
BcaB06g29285 Brassica carinata HOM05D005211 ORTHO05D006148 3.2e-09 65.9 145 39.3
BNapus_Darmor_BZH_scaffold_64p00090 Brassica napus HOM05D005211 ORTHO05D006148 1.2e-08 63.9 142 38.0
BraA04t18707Z Brassica rapa HOM05D005211 ORTHO05D006148 1.2e-08 63.9 142 38.0
QL10p006175 Quercus lobata HOM05D000022 ORTHO05D006148 1.2e-08 63.9 98 48.0
Zm00001eb432720 Zea mays HOM05D005211 ORTHO05D006148 2.1e-08 63.2 172 33.1
A05p03550 Brassica napus HOM05D005211 ORTHO05D006148 1.0e-07 60.8 141 36.2
BraA05t19341Z Brassica rapa HOM05D005211 ORTHO05D006148 1.0e-07 60.8 141 36.2
SEGI_03314 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 1.4e-07 60.5 190 30.5
SEGI_10087 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 6.7e-07 58.2 191 28.8
Ciclev10009640m.g Citrus clementina HOM05D004507 ORTHO05D004874 1.2e-06 57.4 179 31.3
CiPaw.07G186500 Carya illinoinensis HOM05D004507 ORTHO05D004874 1.5e-06 57.0 186 28.0
C04p04120 Brassica napus HOM05D005211 ORTHO05D006148 2.6e-06 56.2 141 34.8
C04p70060 Brassica napus HOM05D005211 ORTHO05D006148 3.3e-06 55.8 138 34.8
BolC4t28506H Brassica oleracea HOM05D005211 ORTHO05D006148 3.3e-06 55.8 138 34.8
Dinv44235 Davidia involucrata HOM05D005211 ORTHO05D006148 5.7e-06 55.1 70 50.0
BcaC02g12418 Brassica carinata HOM05D005211 ORTHO05D006148 7.5e-06 54.7 143 34.3
BolC4t22051H Brassica oleracea HOM05D005211 ORTHO05D006148 7.5e-06 54.7 143 34.3
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 9.7e-06 54.3 177 31.6


User provided reference genes

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