Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G0803 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.1e-273 946.0 503 100.0
TAR365G0909 Trochodendron aralioides HOM05D004018 ORTHO05D004408 2.5e-180 636.0 603 63.8
TAR365G0933 Trochodendron aralioides HOM05D004018 ORTHO05D004408 1.4e-175 620.2 600 63.0
TAR633G0135 Trochodendron aralioides HOM05D004018 ORTHO05D004408 5.3e-138 495.4 608 53.0
Nn4g26185 Nelumbo nucifera HOM05D004018 ORTHO05D004408 1.2e-116 424.5 572 49.1
Actinidia09153 Actinidia chinensis HOM05D004018 ORTHO05D004408 6.4e-107 392.1 395 59.7
Rhsim13G0022700 Rhododendron simsii HOM05D000644 ORTHO05D004408 1.8e-106 390.6 408 59.1
Duzib138G0587 Durio zibethinus HOM05D004018 ORTHO05D004408 4.6e-105 386.0 414 58.2
TAR362G1233 Trochodendron aralioides HOM05D004018 ORTHO05D004408 3.0e-104 383.3 496 51.4
QL12p022414 Quercus lobata HOM05D004018 ORTHO05D004408 1.2e-102 377.9 640 42.8
vmacro02552 Vaccinium macrocarpon HOM05D004018 ORTHO05D004408 2.1e-102 377.1 617 45.1
Actinidia00738 Actinidia chinensis HOM05D004018 ORTHO05D004408 8.9e-101 371.7 343 63.6
CSS0042185 Camellia sinensis var. sinensis HOM05D004018 ORTHO05D004408 2.6e-100 370.2 332 64.5
GSVIVG01011103001 Vitis vinifera HOM05D004018 ORTHO05D004408 4.9e-99 365.9 449 52.1
Cfa006111 Carpinus fangiana HOM05D004018 ORTHO05D004408 8.3e-99 365.2 624 43.3
Aqoxy2G03257 Aquilegia oxysepala HOM05D004018 ORTHO05D004408 1.9e-98 364.0 612 44.9
Ciclev10018884m.g Citrus clementina HOM05D004018 ORTHO05D004408 3.2e-98 363.2 412 55.6
Gorai.008G005300 Gossypium raimondii HOM05D004018 ORTHO05D004408 7.0e-98 362.1 379 58.6
Gohir.A12G005900 Gossypium hirsutum HOM05D004018 ORTHO05D004408 1.6e-97 360.9 380 58.7
Thecc.01G282900 Theobroma cacao HOM05D004018 ORTHO05D004408 6.0e-97 359.0 393 57.8
PSO170G1481 Papaver somniferum HOM05D004018 ORTHO05D004408 7.8e-97 358.6 563 46.2
PSO407G0422 Papaver somniferum HOM05D004018 ORTHO05D004408 3.9e-96 356.3 562 45.7
Gohir.D12G005400 Gossypium hirsutum HOM05D004018 ORTHO05D004408 8.6e-96 355.1 609 42.9
Duzib133G0055 Durio zibethinus HOM05D004018 ORTHO05D004408 1.1e-95 354.8 394 57.1
CANSAT25G1423 Cannabis sativa HOM05D004018 ORTHO05D004408 5.2e-93 345.9 582 41.4
FAN20G3038 Fragaria x ananassa HOM05D000644 ORTHO05D004408 2.6e-92 343.6 564 44.5
Gohir.A08G185500 Gossypium hirsutum HOM05D004018 ORTHO05D004408 7.5e-92 342.0 591 40.9
Atru.chr5.1370 Acer truncatum HOM05D004018 ORTHO05D004408 9.9e-92 341.7 347 59.7
Potri.014G139000 Populus trichocarpa HOM05D004018 ORTHO05D004408 9.9e-92 341.7 560 44.3
Hma1.2p1_0628F.1_g191955 Hydrangea macrophylla HOM05D004018 ORTHO05D004408 1.7e-91 340.9 424 52.8
Peaxi162Scf00570g00314 Petunia axillaris HOM05D004018 ORTHO05D004408 1.7e-91 340.9 587 43.4
Oeu028079.1 Olea europaea HOM05D004018 ORTHO05D004408 2.2e-91 340.5 396 54.3
COL.COLO4_09133 Corchorus olitorius HOM05D004018 ORTHO05D004408 1.4e-90 337.8 616 41.9
Haze_04739 Corylus avellana HOM05D004018 ORTHO05D004408 1.4e-90 337.8 386 55.7
MD11G1289200 Malus domestica HOM05D004018 ORTHO05D004408 1.9e-90 337.4 362 57.7
Gorai.004G215600 Gossypium raimondii HOM05D004018 ORTHO05D004408 2.4e-90 337.0 561 43.3
Phvul.007G169800 Phaseolus vulgaris HOM05D004018 ORTHO05D004408 4.1e-90 336.3 614 41.4
FAN27G0494 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.6e-89 334.3 599 41.9
Nitab4.5_0011633g0010 Nicotiana tabacum HOM05D004018 ORTHO05D004408 2.1e-89 334.0 391 53.7
FvH4_2g23870 Fragaria vesca HOM05D004018 ORTHO05D004408 6.0e-89 332.4 592 41.7
MD03G1268400 Malus domestica HOM05D004018 ORTHO05D004408 6.0e-89 332.4 320 62.5
Solyc09g064860.3 Solanum lycopersicum HOM05D004018 ORTHO05D004408 1.3e-88 331.3 613 41.1
FAN24G0467 Fragaria x ananassa HOM05D000644 ORTHO05D004408 1.7e-88 330.9 592 41.6
RcHm_v2.0_Chr6g0291481 Rosa chinensis HOM05D004018 ORTHO05D004408 3.0e-88 330.1 590 42.9
Sopen09g026560 Solanum pennellii HOM05D004018 ORTHO05D004408 3.0e-88 330.1 607 41.2
Prupe.8G244100 Prunus persica HOM05D004018 ORTHO05D004408 1.1e-87 328.2 400 55.0
BcaC03g16187 Brassica carinata HOM05D004018 ORTHO05D004408 3.3e-87 326.6 513 44.8
Nitab4.5_0001028g0170 Nicotiana tabacum HOM05D004018 ORTHO05D004408 5.6e-87 325.9 622 38.9
BraA02t07491Z Brassica rapa HOM05D004018 ORTHO05D004408 7.3e-87 325.5 504 45.0
THA.LOC104801219 Tarenaya hassleriana HOM05D004018 ORTHO05D004408 9.5e-87 325.1 555 42.5
A02p25020 Brassica napus HOM05D004018 ORTHO05D004408 1.2e-86 324.7 504 45.0
C02p39650 Brassica napus HOM05D004018 ORTHO05D004408 6.2e-86 322.4 513 44.6
Manes.01G209500 Manihot esculenta HOM05D004018 ORTHO05D004408 6.2e-86 322.4 630 40.3
CARHR251270 Cardamine hirsuta HOM05D004018 ORTHO05D004408 8.1e-86 322.0 548 42.9
Carub.0006s3419 Capsella rubella HOM05D004018 ORTHO05D004408 3.1e-85 320.1 555 41.3
Ca_09771_v3 Cicer arietinum L. HOM05D004018 ORTHO05D004408 3.1e-85 320.1 618 39.3
Sp6g02920 Schrenkiella parvula HOM05D004018 ORTHO05D004408 8.9e-85 318.5 564 41.7
Oeu047882.1 Olea europaea HOM05D004018 ORTHO05D004408 1.5e-84 317.8 581 39.4
TWI14G0752 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 2.0e-84 317.4 413 50.6
FAN15G3429 Fragaria x ananassa HOM05D000644 ORTHO05D004408 2.6e-84 317.0 601 41.3
MSTRG.12568 Avicennia marina HOM05D004018 ORTHO05D004408 2.2e-83 313.9 333 56.2
VMungo0720G2698 Vigna mungo HOM05D004018 ORTHO05D004408 2.9e-83 313.5 611 39.4
Gohir.D08G203601 Gossypium hirsutum HOM05D004018 ORTHO05D004408 4.1e-82 309.7 304 60.9
Eucgr.H01516 Eucalyptus grandis HOM05D004018 ORTHO05D004408 7.1e-82 308.9 635 40.0
CiPaw.07G093900 Carya illinoinensis HOM05D004018 ORTHO05D004408 1.2e-81 308.1 665 37.4
AT4G02880 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 6.0e-81 305.8 565 40.9
AL6G50040 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 7.8e-81 305.4 343 54.8
TPR.G1562 Trifolium pratense HOM05D004018 ORTHO05D004408 1.0e-80 305.1 318 57.5
SalBow4G1908 Salvia bowleyana HOM05D004018 ORTHO05D004408 3.0e-80 303.5 597 38.4
arahy.Tifrunner.gnm1.ann1.6Q7DFN Arachis hypogaea HOM05D004018 ORTHO05D004408 3.9e-80 303.1 603 38.6
Medtr1g072560 Medicago truncatula HOM05D004018 ORTHO05D004408 6.6e-80 302.4 328 55.5
BcaC05g24644 Brassica carinata HOM05D004018 ORTHO05D004408 1.9e-79 300.8 543 40.7
Thhalv10007330m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 3.3e-79 300.1 538 41.8
Lalb_Chr02g0142861 Lupinus albus HOM05D004018 ORTHO05D004408 3.3e-79 300.1 610 38.9
Glyma.10G025000 Glycine max HOM05D004018 ORTHO05D004408 9.6e-79 298.5 312 56.4
MSTRG.18219 Avicennia marina HOM05D004018 ORTHO05D004408 1.2e-78 298.1 332 53.6
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 1.6e-78 297.7 526 42.2
Lalb_Chr21g0306531 Lupinus albus HOM05D004018 ORTHO05D004408 2.8e-78 297.0 611 40.6
Psat6g061120 Pisum sativum HOM05D004018 ORTHO05D004408 2.8e-78 297.0 591 38.9
TWI59G1189 Tripterygium wilfordii HOM05D004018 ORTHO05D004408 2.8e-78 297.0 404 49.3
Cc01_g19730 Coffea canephora HOM05D004018 ORTHO05D004408 3.6e-78 296.6 314 57.0
Lj2A1177T38 Lonicera japonica HOM05D004018 ORTHO05D004408 1.8e-77 294.3 479 44.3
Thhalv10028568m.g Eutrema salsugineum HOM05D004018 ORTHO05D004408 5.2e-77 292.7 557 41.1
Cpa.g.sc837.2 Carica papaya HOM05D004018 ORTHO05D004408 6.9e-77 292.4 268 64.6
Carub.0001s0240 Capsella rubella HOM05D004018 ORTHO05D004408 9.0e-77 292.0 568 39.4
Sp1g02290 Schrenkiella parvula HOM05D004018 ORTHO05D004408 2.0e-76 290.8 577 38.8
AT1G03290 Arabidopsis thaliana HOM05D004018 ORTHO05D004408 2.6e-76 290.4 569 39.2
Migut.D00269 Erythranthe guttata HOM05D004018 ORTHO05D004408 1.7e-75 287.7 557 38.6
AL1G12800 Arabidopsis lyrata HOM05D004018 ORTHO05D004408 2.2e-75 287.3 571 38.9
arahy.Tifrunner.gnm1.ann1.BX9H6P Arachis hypogaea HOM05D004018 ORTHO05D004408 2.2e-75 287.3 599 38.7
Glyma.02G148900 Glycine max HOM05D004018 ORTHO05D004408 2.2e-75 287.3 604 38.2
SalBow6G7233 Salvia bowleyana HOM05D004018 ORTHO05D004408 9.3e-74 282.0 602 38.4
BolC2t09981H Brassica oleracea HOM05D004018 ORTHO05D004408 1.6e-73 281.2 505 42.0
CARHR002590 Cardamine hirsuta HOM05D004018 ORTHO05D004408 2.1e-73 280.8 576 38.4
DCAR_018413 Daucus carota HOM05D004018 ORTHO05D004408 2.7e-73 280.4 596 39.1
CiPaw.08G103600 Carya illinoinensis HOM05D004018 ORTHO05D004408 3.5e-73 280.0 286 57.3
ECA248G1820 Erigeron canadensis HOM05D004018 ORTHO05D004408 3.5e-73 280.0 542 40.2
Lj5g0010123 Lotus japonicus HOM05D004018 ORTHO05D004408 1.7e-72 277.7 627 36.5
DCAR_002748 Daucus carota HOM05D004018 ORTHO05D004408 2.5e-71 273.9 590 37.3
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 9.6e-71 271.9 548 38.9
Eucgr.K03388 Eucalyptus grandis HOM05D004018 ORTHO05D004408 2.1e-70 270.8 616 37.3
Sed0023986 Sechium edule HOM05D004018 ORTHO05D004408 3.6e-70 270.0 330 49.4
Hund28856 Selenicereus undatus HOM05D004018 ORTHO05D004408 3.6e-70 270.0 278 59.7
Hund28858 Selenicereus undatus HOM05D004018 ORTHO05D004408 3.6e-70 270.0 278 59.7
Sed0026091 Sechium edule HOM05D004018 ORTHO05D004408 6.2e-70 269.2 540 38.1
A03p30760 Brassica napus HOM05D004018 ORTHO05D004408 1.8e-69 267.7 515 39.6
Aa31LG1G9250 Aethionema arabicum HOM05D004018 ORTHO05D004408 5.3e-69 266.2 571 38.4
SGA_v2.0_scaffold258G45767 Striga asiatica HOM05D004018 ORTHO05D004408 6.9e-69 265.8 331 48.6
BraA10t42458Z Brassica rapa HOM05D004018 ORTHO05D004408 9.0e-69 265.4 563 36.4
PGR044G1283 Punica granatum HOM05D004018 ORTHO05D004408 5.8e-68 262.7 607 36.6
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 2.9e-67 260.4 561 37.6
ClCG09G006910 Citrullus lanatus HOM05D004018 ORTHO05D004408 2.9e-67 260.4 348 48.9
HanXRQChr11g0327641 Helianthus annuus HOM05D004018 ORTHO05D004408 3.2e-66 256.9 501 39.5
BolC3t16038H Brassica oleracea HOM05D004018 ORTHO05D004408 4.2e-66 256.5 534 38.0
MELO3C015856.2 Cucumis melo HOM05D004018 ORTHO05D004408 7.1e-66 255.8 595 36.8
C03p37460 Brassica napus HOM05D004018 ORTHO05D004408 9.3e-66 255.4 535 37.4
HanXRQChr01g0002351 Helianthus annuus HOM05D004018 ORTHO05D004408 2.1e-65 254.2 568 39.6
AUR62033708 Chenopodium quinoa HOM05D004018 ORTHO05D004408 1.0e-64 251.9 637 36.1
AUR62036814 Chenopodium quinoa HOM05D004018 ORTHO05D004408 1.8e-64 251.1 638 35.3
BraA03t12255Z Brassica rapa HOM05D004018 ORTHO05D004408 8.7e-64 248.8 542 37.5
Migut.N02157 Erythranthe guttata HOM05D004018 ORTHO05D004408 1.9e-63 247.7 594 35.0
BcaC05g24546 Brassica carinata HOM05D004018 ORTHO05D004408 4.3e-63 246.5 264 56.4
Sc24g0004120 Simmondsia chinensis HOM05D004018 ORTHO05D004408 1.3e-62 245.0 430 42.1
ATR0626G273 Amborella trichopoda HOM05D004018 ORTHO05D004408 2.1e-57 227.6 610 34.3
HPP92_003154 Vanilla planifolia HOM05D004018 ORTHO05D004408 3.5e-57 226.9 279 50.9
EL10Ac7g17209 Beta vulgaris HOM05D004018 ORTHO05D004408 1.3e-56 224.9 324 46.6
DCAR_012464 Daucus carota HOM05D000644 ORTHO05D000504 1.3e-56 224.9 318 46.5
Atru.chr12.465 Acer truncatum HOM05D004018 ORTHO05D004408 3.9e-56 223.4 216 64.8
CsaV3_7G028620 Cucumis sativus L. HOM05D004018 ORTHO05D004408 1.5e-55 221.5 561 36.0
MBI17_g12005_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 3.3e-55 220.3 243 55.6
Dinv11250 Davidia involucrata HOM05D004018 ORTHO05D004408 5.6e-55 219.5 220 58.6
Atru.chr12.487 Acer truncatum HOM05D004018 ORTHO05D004408 7.4e-55 219.2 216 63.9
Zm00001eb287880 Zea mays HOM05D004018 ORTHO05D004408 1.0e-51 208.8 273 48.0
CDE05G3031 Ceratophyllum demersum HOM05D004018 ORTHO05D004408 1.4e-50 204.9 533 31.5
Lsat_1_v5_gn_5_187400 Lactuca sativa HOM05D004018 ORTHO05D004408 1.5e-47 194.9 534 32.8
ECA236G3018 Erigeron canadensis HOM05D004018 ORTHO05D004408 1.1e-45 188.7 248 45.6
Zm00001eb349530 Zea mays HOM05D004018 ORTHO05D004408 3.1e-45 187.2 273 45.1
Os10g0315400 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 1.1e-42 178.7 233 48.9
Pp3c15_12690 Physcomitrium patens HOM05D004018 ORTHO05D004408 2.5e-42 177.6 377 33.2
SGA_v2.0_scaffold11G05799 Striga asiatica HOM05D004018 ORTHO05D004408 7.2e-42 176.0 500 31.0
CARHR005950 Cardamine hirsuta HOM05D004018 ORTHO05D004408 2.7e-41 174.1 520 34.0
Dinv11249 Davidia involucrata HOM05D004018 ORTHO05D004408 1.0e-40 172.2 177 63.3
Sabra14G0104800 Salix brachista HOM05D004018 ORTHO05D004408 2.8e-38 164.1 407 36.4
HanXRQChr04g0118801 Helianthus annuus HOM05D004018 ORTHO05D004408 1.4e-37 161.8 282 40.4
Mapoly0005s0053 Marchantia polymorpha HOM05D004018 ORTHO05D004408 1.3e-35 155.2 306 36.6
Sabra02G0167700 Salix brachista HOM05D004018 ORTHO05D004408 3.8e-35 153.7 496 31.5
ECA236G2305 Erigeron canadensis HOM05D004018 ORTHO05D004408 6.5e-35 152.9 232 43.5
Pp3c9_12210 Physcomitrium patens HOM05D004018 ORTHO05D004408 4.7e-33 146.7 268 35.8
Ah.08g213040 Amaranthus hybridus HOM05D004018 ORTHO05D004408 7.0e-29 132.9 198 49.0
HanXRQChr03g0063801 Helianthus annuus HOM05D004018 ORTHO05D004408 5.5e-26 123.2 181 44.2
unitig_0.g1008 Utricularia gibba HOM05D004018 ORTHO05D004408 4.7e-25 120.2 517 26.1
BcaC03g15959 Brassica carinata HOM05D004018 ORTHO05D004408 3.9e-24 117.1 135 56.3
ECA236G2562 Erigeron canadensis HOM05D004018 ORTHO05D004408 9.7e-23 112.5 277 35.7
HanXRQChr03g0063751 Helianthus annuus HOM05D004018 ORTHO05D004408 4.8e-22 110.2 216 37.5
SMO364G0006 Selaginella moellendorffii HOM05D004018 ORTHO05D004408 8.2e-22 109.4 197 39.6
MD11G1124600 Malus domestica HOM05D004018 ORTHO05D004408 1.0e-19 102.4 82 63.4
AagrBONN_evm.TU.Sc2ySwM_228.3859 Anthoceros agrestis HOM05D004018 ORTHO05D004408 1.5e-18 98.6 184 34.2
C02p37230 Brassica napus HOM05D004018 ORTHO05D004408 7.2e-18 96.3 91 53.8
MBI05_g27108_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 1.6e-17 95.1 76 73.7
ECA247G3795 Erigeron canadensis HOM05D004018 ORTHO05D004408 6.1e-17 93.2 193 34.2
Gohir.D01G114520 Gossypium hirsutum HOM05D004018 ORTHO05D004408 3.0e-16 90.9 126 45.2
Gorai.007G029100 Gossypium raimondii HOM05D004018 ORTHO05D004408 1.3e-14 85.5 78 59.0
HanXRQChr03g0063771 Helianthus annuus HOM05D004018 ORTHO05D004408 4.8e-14 83.6 175 37.1
BolC2t09733H Brassica oleracea HOM05D004018 ORTHO05D004408 6.3e-14 83.2 59 62.7
Gohir.D06G055550 Gossypium hirsutum HOM05D004018 ORTHO05D004408 8.3e-14 82.8 129 41.1
SEGI_03888 Sequoiadendron giganteum HOM05D004018 ORTHO05D004408 1.6e-12 78.6 198 36.9
Os05g0394900 Oryza sativa ssp. japonica HOM05D004018 ORTHO05D004408 1.3e-11 75.5 151 40.4
Gorai.013G189300 Gossypium raimondii HOM05D004018 ORTHO05D004408 6.5e-11 73.2 113 40.7
MBI08_g05535_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 1.9e-10 71.6 151 40.4
PGR031G1662 Punica granatum HOM05D004018 ORTHO05D004408 3.2e-10 70.9 102 47.1
Peaxi162Scf00145g00517 Petunia axillaris HOM05D004018 ORTHO05D004408 4.2e-10 70.5 92 46.7
MBI19_g13735_MAGBIO Magnolia biondii HOM05D004018 ORTHO05D004408 2.7e-09 67.8 100 49.0
MBI15_g37227_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D004408 5.2e-08 63.5 69 60.9
Gohir.D02G151450 Gossypium hirsutum HOM05D004018 ORTHO05D004408 2.6e-07 61.2 127 36.2
MBI19_g10807_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D010670 7.5e-07 59.7 68 58.8
MBI18_g25927_MAGBIO Magnolia biondii HOM05D001851 ORTHO05D010670 9.8e-07 59.3 133 38.3
Hund17963 Selenicereus undatus HOM05D004018 ORTHO05D004408 1.7e-06 58.5 50 60.0


User provided reference genes

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