Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G0774 Trochodendron aralioides HOM05D006024 ORTHO05D007505 5.9e-152 540.8 267 100.0
Nn7g36060 Nelumbo nucifera HOM05D006024 ORTHO05D007505 3.4e-115 418.7 252 79.0
Aqoxy1G00184 Aquilegia oxysepala HOM05D006024 ORTHO05D007505 3.2e-113 412.1 252 79.8
GSVIVG01025335001 Vitis vinifera HOM05D006024 ORTHO05D007505 1.5e-110 403.3 252 76.2
PSO339G6331 Papaver somniferum HOM05D006024 ORTHO05D007505 3.4e-107 392.1 253 75.5
CiPaw.13G165500 Carya illinoinensis HOM05D006024 ORTHO05D007505 4.4e-107 391.7 252 75.4
Hma1.2p1_2304F.1_g319350 Hydrangea macrophylla HOM05D006024 ORTHO05D007505 8.3e-106 387.5 252 74.2
Cfa009695 Carpinus fangiana HOM05D006024 ORTHO05D007505 1.1e-105 387.1 252 73.4
CSS0019947 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 4.1e-105 385.2 264 72.0
CSS0045029 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 4.1e-105 385.2 264 72.0
Ciclev10015756m.g Citrus clementina HOM05D006024 ORTHO05D007505 9.2e-105 384.0 252 74.6
Potri.T085501 Populus trichocarpa HOM05D006024 ORTHO05D007505 9.2e-105 384.0 252 71.4
Prupe.6G018500 Prunus persica HOM05D006024 ORTHO05D007505 1.2e-104 383.6 251 72.1
QL01p006224 Quercus lobata HOM05D006024 ORTHO05D007505 2.7e-104 382.5 250 72.8
TWI60G1552 Tripterygium wilfordii HOM05D006024 ORTHO05D007505 2.7e-104 382.5 252 74.2
Thecc.09G223300 Theobroma cacao HOM05D006024 ORTHO05D007505 3.5e-104 382.1 252 72.6
Cc01_g04140 Coffea canephora HOM05D006024 ORTHO05D007505 6.0e-104 381.3 251 71.7
Gorai.010G128200 Gossypium raimondii HOM05D006024 ORTHO05D007505 1.0e-103 380.6 252 72.2
MBI04_g27131_MAGBIO Magnolia biondii HOM05D006024 ORTHO05D007505 2.3e-103 379.4 231 77.5
Potri.003G210900 Populus trichocarpa HOM05D006024 ORTHO05D007505 2.3e-103 379.4 252 71.4
FvH4_3g43551 Fragaria vesca HOM05D006024 ORTHO05D007505 3.0e-103 379.0 252 71.4
Gohir.D06G112300 Gossypium hirsutum HOM05D006024 ORTHO05D007505 3.0e-103 379.0 252 71.8
COL.COLO4_09894 Corchorus olitorius HOM05D006024 ORTHO05D007505 6.6e-103 377.9 248 72.2
RcHm_v2.0_Chr5g0078111 Rosa chinensis HOM05D006024 ORTHO05D007505 8.6e-103 377.5 252 71.0
PGR119G1295 Punica granatum HOM05D006024 ORTHO05D007505 2.5e-102 375.9 252 71.0
Sc06g0004470 Simmondsia chinensis HOM05D006024 ORTHO05D007505 2.5e-102 375.9 252 71.8
Eucgr.J00813 Eucalyptus grandis HOM05D006024 ORTHO05D007505 5.6e-102 374.8 252 71.0
MD11G1022800 Malus domestica HOM05D006024 ORTHO05D007505 1.2e-101 373.6 252 71.0
Duzib168G0763 Durio zibethinus HOM05D006024 ORTHO05D007505 2.1e-101 372.9 245 73.9
Rhsim13G0225400 Rhododendron simsii HOM05D006024 ORTHO05D007505 2.1e-101 372.9 252 70.6
FAN11G3540 Fragaria x ananassa HOM05D006024 ORTHO05D007505 2.8e-101 372.5 253 71.1
vmacro04169 Vaccinium macrocarpon HOM05D006024 ORTHO05D007505 3.6e-101 372.1 278 66.5
Manes.14G014400 Manihot esculenta HOM05D006024 ORTHO05D007505 2.3e-100 369.4 252 70.2
Atru.chr3.2505 Acer truncatum HOM05D006024 ORTHO05D007505 4.0e-100 368.6 255 71.4
DCAR_002037 Daucus carota HOM05D006024 ORTHO05D007505 2.0e-99 366.3 252 70.6
HanXRQChr02g0056471 Helianthus annuus HOM05D006024 ORTHO05D007505 2.0e-99 366.3 253 69.2
Lsat_1_v5_gn_6_50101 Lactuca sativa HOM05D006024 ORTHO05D007505 5.8e-99 364.8 250 68.8
Oeu042179.3 Olea europaea HOM05D006024 ORTHO05D007505 1.7e-98 363.2 252 67.5
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 2.2e-98 362.8 252 70.6
Lj3g0007180 Lotus japonicus HOM05D006024 ORTHO05D007505 4.9e-98 361.7 252 69.8
Medtr2g098500 Medicago truncatula HOM05D006024 ORTHO05D007505 6.4e-98 361.3 252 71.0
Lj4g0026168 Lotus japonicus HOM05D006024 ORTHO05D007505 1.1e-97 360.5 252 69.4
CANSAT54G0336 Cannabis sativa HOM05D006024 ORTHO05D007505 2.4e-97 359.4 252 68.3
Phvul.005G150400 Phaseolus vulgaris HOM05D006024 ORTHO05D007505 1.6e-96 356.7 252 70.2
Glyma.13G342800 Glycine max HOM05D006024 ORTHO05D007505 2.1e-96 356.3 252 69.8
Cpa.g.sc84.110 Carica papaya HOM05D006024 ORTHO05D007505 3.5e-96 355.5 252 68.3
Solyc01g006630.3 Solanum lycopersicum HOM05D006024 ORTHO05D007505 3.5e-96 355.5 252 65.9
Sopen01g002620 Solanum pennellii HOM05D006024 ORTHO05D007505 3.5e-96 355.5 252 65.9
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 4.6e-96 355.1 252 70.2
Sed0023125 Sechium edule HOM05D006024 ORTHO05D007505 6.0e-96 354.8 252 69.8
Lalb_Chr24g0396941 Lupinus albus HOM05D006024 ORTHO05D007505 1.0e-95 354.0 252 68.3
ATR0605G294 Amborella trichopoda HOM05D006024 ORTHO05D007505 1.3e-95 353.6 252 65.5
Ca_01271_v3 Cicer arietinum L. HOM05D006024 ORTHO05D007505 1.7e-95 353.2 252 69.0
ECA233G0904 Erigeron canadensis HOM05D006024 ORTHO05D007505 1.7e-95 353.2 255 66.7
arahy.Tifrunner.gnm1.ann1.7L1RE9 Arachis hypogaea HOM05D006024 ORTHO05D007505 3.9e-95 352.1 252 68.7
AUR62019251 Chenopodium quinoa HOM05D006024 ORTHO05D007505 6.6e-95 351.3 247 69.6
MELO3C014640.2 Cucumis melo HOM05D006024 ORTHO05D007505 8.6e-95 350.9 252 69.4
Os09g0280300 Oryza sativa ssp. japonica HOM05D006024 ORTHO05D007505 5.6e-94 348.2 252 66.3
CsaV3_4G023790 Cucumis sativus L. HOM05D006024 ORTHO05D007505 2.1e-93 346.3 252 69.0
AUR62000078 Chenopodium quinoa HOM05D006024 ORTHO05D007505 2.8e-93 345.9 247 68.8
BcaB06g26149 Brassica carinata HOM05D006024 ORTHO05D007505 4.7e-93 345.1 250 67.6
A05p27990 Brassica napus HOM05D006024 ORTHO05D007505 4.7e-93 345.1 252 66.7
Nitab4.5_0003796g0050 Nicotiana tabacum HOM05D006024 ORTHO05D007505 6.2e-93 344.7 250 66.8
BcaC05g28281 Brassica carinata HOM05D006024 ORTHO05D007505 1.4e-92 343.6 250 66.8
Dinv36303 Davidia involucrata HOM05D006024 ORTHO05D007505 3.1e-92 342.4 209 77.0
THA.LOC104816910 Tarenaya hassleriana HOM05D006024 ORTHO05D007505 5.2e-92 341.7 252 67.1
AT3G20790 Arabidopsis thaliana HOM05D006024 ORTHO05D007505 6.8e-92 341.3 252 66.3
MSTRG.21409 Avicennia marina HOM05D006024 ORTHO05D007505 8.9e-92 340.9 252 66.3
CARHR096620 Cardamine hirsuta HOM05D006024 ORTHO05D007505 1.5e-91 340.1 252 66.3
Carub.0003s2075 Capsella rubella HOM05D006024 ORTHO05D007505 3.4e-91 339.0 252 66.7
AL3G34710 Arabidopsis lyrata HOM05D006024 ORTHO05D007505 4.4e-91 338.6 252 66.3
Thhalv10021019m.g Eutrema salsugineum HOM05D006024 ORTHO05D007505 5.8e-91 338.2 252 66.3
EL10Ac4g10317 Beta vulgaris HOM05D006024 ORTHO05D007505 1.3e-90 337.0 252 65.9
Peaxi162Scf00559g00415 Petunia axillaris HOM05D006024 ORTHO05D007505 2.2e-90 336.3 267 61.4
Sp3g18810 Schrenkiella parvula HOM05D006024 ORTHO05D007505 1.1e-89 334.0 252 65.1
BolC5t33061H Brassica oleracea HOM05D006024 ORTHO05D007505 7.1e-89 331.3 252 65.1
BraA05t21682Z Brassica rapa HOM05D006024 ORTHO05D007505 1.2e-88 330.5 252 65.1
FAN11G0987 Fragaria x ananassa HOM05D006024 ORTHO05D007505 1.6e-88 330.1 253 65.2
C05p43290 Brassica napus HOM05D006024 ORTHO05D007505 2.7e-88 329.3 252 64.7
CAN.G388.68 Capsicum annuum HOM05D006024 ORTHO05D007505 1.0e-87 327.4 264 61.0
Hund22080 Selenicereus undatus HOM05D006024 ORTHO05D007505 2.5e-86 322.8 249 63.9
MSTRG.12483 Avicennia marina HOM05D006024 ORTHO05D007505 5.6e-86 321.6 252 61.9
Migut.N02293 Erythranthe guttata HOM05D006024 ORTHO05D007505 1.2e-85 320.5 254 61.4
SEGI_39854 Sequoiadendron giganteum HOM05D006024 ORTHO05D007505 3.6e-85 318.9 250 61.2
Gohir.A06G108500 Gossypium hirsutum HOM05D006024 ORTHO05D007505 3.1e-84 315.8 252 63.1
Lju1319A3G40 Lonicera japonica HOM05D006024 ORTHO05D007505 2.0e-83 313.2 218 69.3
Lj1A365G18 Lonicera japonica HOM05D006024 ORTHO05D007505 4.4e-83 312.0 218 68.8
arahy.Tifrunner.gnm1.ann1.3AB71G Arachis hypogaea HOM05D006024 ORTHO05D007505 3.9e-79 298.9 247 62.8
Migut.D00559 Erythranthe guttata HOM05D006024 ORTHO05D007505 1.1e-78 297.4 252 60.3
ClCG02G023630 Citrullus lanatus HOM05D006024 ORTHO05D007505 1.5e-78 297.0 201 73.6
VMungo0251G0909 Vigna mungo HOM05D006024 ORTHO05D007505 2.8e-77 292.7 252 56.3
VMungo1080G1390 Vigna mungo HOM05D006024 ORTHO05D007505 9.9e-75 284.3 252 54.8
SGA_v2.0_scaffold1G00800 Striga asiatica HOM05D006024 ORTHO05D007505 1.1e-73 280.8 247 57.9
unitig_8.g3081 Utricularia gibba HOM05D006024 ORTHO05D007505 4.2e-73 278.9 216 62.5
Aa31LG8G7600 Aethionema arabicum HOM05D006024 ORTHO05D007505 3.9e-71 272.3 250 56.4
Pp3c6_24290 Physcomitrium patens HOM05D006024 ORTHO05D007505 1.3e-66 257.3 244 50.4
Mapoly0150s0011 Marchantia polymorpha HOM05D006024 ORTHO05D007505 1.7e-66 256.9 250 49.6
AagrBONN_evm.TU.Sc2ySwM_344.3372 Anthoceros agrestis HOM05D006024 ORTHO05D007505 1.2e-64 250.8 250 50.8
SMO116G0160 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 8.7e-63 244.6 266 46.6
Pp3c16_13070 Physcomitrium patens HOM05D006024 ORTHO05D007505 1.0e-58 231.1 269 45.7
SMO146G0097 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 4.6e-56 222.2 238 47.9
SMO144G0113 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 1.4e-49 200.7 213 46.5
AagrBONN_evm.TU.Sc2ySwM_344.254 Anthoceros agrestis HOM05D006024 ORTHO05D007505 1.9e-49 200.3 241 40.2
Mapoly0033s0066 Marchantia polymorpha HOM05D006024 ORTHO05D007505 1.8e-47 193.7 227 43.6
Pp3c3_20310 Physcomitrium patens HOM05D006024 ORTHO05D007505 2.5e-46 189.9 253 40.7
Haze_23046 Corylus avellana HOM05D006024 ORTHO05D007505 2.6e-43 179.9 188 50.5
Nitab4.5_0008137g0040 Nicotiana tabacum HOM05D006024 ORTHO05D007505 1.4e-41 174.1 267 39.3
Psat7g086040 Pisum sativum HOM05D006024 ORTHO05D007505 1.2e-35 154.5 210 44.8
Zm00001eb094580 Zea mays HOM05D006024 ORTHO05D007505 1.9e-33 147.1 97 68.0
Psat6g204000 Pisum sativum HOM05D006024 ORTHO05D007505 6.1e-32 142.1 153 52.3
FAN25G0441 Fragaria x ananassa HOM05D006024 ORTHO05D007505 1.0e-31 141.4 128 58.6
Medtr8g016390 Medicago truncatula HOM05D006024 ORTHO05D007505 6.5e-26 122.1 96 67.7
Glyma.15G031500 Glycine max HOM05D006024 ORTHO05D007505 1.1e-25 121.3 135 51.9
Actinidia16298 Actinidia chinensis HOM05D006024 ORTHO05D007505 1.8e-23 114.0 81 65.4
HPP92_000457 Vanilla planifolia HOM05D006024 ORTHO05D007505 2.3e-23 113.6 79 64.6
Cre01.g023300 Chlamydomonas reinhardtii HOM05D006024 ORTHO05D007505 8.8e-23 111.7 297 27.9
Cfa023900 Carpinus fangiana HOM05D006024 ORTHO05D007505 1.3e-21 107.8 255 27.1
Psat5g288640 Pisum sativum HOM05D006024 ORTHO05D007505 4.8e-21 105.9 130 50.0
C01p43430 Brassica napus HOM05D006024 ORTHO05D007505 5.3e-20 102.4 99 56.6
BolC1t04302H Brassica oleracea HOM05D006024 ORTHO05D007505 5.3e-20 102.4 99 56.6
Oeu037561.1 Olea europaea HOM05D006024 ORTHO05D007505 2.4e-12 77.0 51 68.6
BcaC09g49021 Brassica carinata HOM05D006024 ORTHO05D007505 3.5e-11 73.2 82 52.4
TAR636G1381 Trochodendron aralioides HOM05D006024 ORTHO05D007505 5.5e-09 65.9 36 88.9
FAN16G2307 Fragaria x ananassa HOM05D006024 ORTHO05D007505 7.5e-06 55.5 39 61.5


User provided reference genes

Program Settings