Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G0684 Trochodendron aralioides HOM05D004016 ORTHO05D004732 7.1e-110 400.6 200 100.0
TAR633G2817 Trochodendron aralioides HOM05D004016 ORTHO05D004732 1.3e-74 283.5 201 75.6
Dinv32914 Davidia involucrata HOM05D004016 ORTHO05D004732 8.0e-61 237.7 209 64.6
Hma1.2p1_0667F.1_g199710 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 5.0e-55 218.4 211 61.6
Hma1.2p1_0822F.1_g224340 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 4.2e-54 215.3 209 60.3
Aqoxy5G00450 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 7.2e-54 214.5 208 59.1
Lj2E1169T0 Lonicera japonica HOM05D004016 ORTHO05D004732 1.6e-53 213.4 212 61.3
Ciclev10022155m.g Citrus clementina HOM05D004016 ORTHO05D004732 2.6e-51 206.1 219 57.1
Manes.05G079900 Manihot esculenta HOM05D004016 ORTHO05D004732 2.6e-51 206.1 216 55.1
COL.COLO4_09066 Corchorus olitorius HOM05D004016 ORTHO05D004732 9.8e-51 204.1 217 58.1
Manes.01G206100 Manihot esculenta HOM05D004016 ORTHO05D004732 9.8e-51 204.1 218 56.4
Actinidia21126 Actinidia chinensis HOM05D004016 ORTHO05D004732 1.3e-50 203.8 206 57.3
FAN15G1959 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.3e-50 203.8 208 54.3
Cpa.g.sc487.4 Carica papaya HOM05D004016 ORTHO05D004732 3.7e-50 202.2 218 55.5
FAN27G2694 Fragaria x ananassa HOM05D004016 ORTHO05D004732 6.3e-50 201.4 208 53.8
Potri.005G211400 Populus trichocarpa HOM05D004016 ORTHO05D004732 6.3e-50 201.4 216 56.9
Cc01_g19290 Coffea canephora HOM05D004016 ORTHO05D004732 8.3e-50 201.1 220 55.5
FAN20G3152 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.1e-49 200.7 211 53.6
RcHm_v2.0_Chr6g0290651 Rosa chinensis HOM05D004016 ORTHO05D004732 1.1e-49 200.7 222 53.6
Prupe.8G238400 Prunus persica HOM05D004016 ORTHO05D004732 4.1e-49 198.7 212 55.2
Thecc.01G275600 Theobroma cacao HOM05D004016 ORTHO05D004732 9.1e-49 197.6 217 55.8
Lalb_Chr02g0142631 Lupinus albus HOM05D004016 ORTHO05D004732 1.2e-48 197.2 202 57.9
Sc05g0001440 Simmondsia chinensis HOM05D004016 ORTHO05D004732 1.2e-48 197.2 202 56.4
FAN24G3262 Fragaria x ananassa HOM05D004016 ORTHO05D004732 2.7e-48 196.1 211 52.6
MD03G1262100 Malus domestica HOM05D004016 ORTHO05D004732 3.5e-48 195.7 210 54.8
Haze_04687 Corylus avellana HOM05D004016 ORTHO05D004732 4.5e-48 195.3 207 58.0
Gohir.A08G065500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 4.5e-48 195.3 213 55.9
Lj1C48T4 Lonicera japonica HOM05D004016 ORTHO05D004732 4.5e-48 195.3 204 54.9
Cfa006163 Carpinus fangiana HOM05D004016 ORTHO05D004732 5.9e-48 194.9 209 58.4
Atru.chr5.1471 Acer truncatum HOM05D004016 ORTHO05D004732 7.7e-48 194.5 221 54.8
FvH4_2g23281 Fragaria vesca HOM05D004016 ORTHO05D004732 7.7e-48 194.5 210 52.9
Duzib133G1129 Durio zibethinus HOM05D004016 ORTHO05D004732 2.9e-47 192.6 211 55.9
Ah.02g110900 Amaranthus hybridus HOM05D004016 ORTHO05D004732 3.8e-47 192.2 206 55.8
Gohir.D08G074000 Gossypium hirsutum HOM05D004016 ORTHO05D004732 3.8e-47 192.2 214 56.1
Gorai.004G078400 Gossypium raimondii HOM05D004016 ORTHO05D004732 5.0e-47 191.8 214 55.6
Lalb_Chr21g0306401 Lupinus albus HOM05D004016 ORTHO05D004732 1.1e-46 190.7 203 54.2
EL10Ac5g10544 Beta vulgaris HOM05D004016 ORTHO05D004732 1.9e-46 189.9 206 53.4
MD11G1282800 Malus domestica HOM05D004016 ORTHO05D004732 1.9e-46 189.9 209 53.6
Ca_09744_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 2.5e-46 189.5 205 56.6
Potri.002G050900 Populus trichocarpa HOM05D004016 ORTHO05D004732 9.5e-46 187.6 219 53.0
Lsat_1_v5_gn_8_56660 Lactuca sativa HOM05D004016 ORTHO05D004732 1.2e-45 187.2 219 53.9
Duzib138G0182 Durio zibethinus HOM05D004016 ORTHO05D004732 1.6e-45 186.8 216 54.2
vmacro14911 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 3.6e-45 185.7 206 55.8
Solyc09g065380.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 6.1e-45 184.9 217 52.5
MSTRG.18246 Avicennia marina HOM05D004016 ORTHO05D004732 1.0e-44 184.1 209 55.5
Sopen09g027150 Solanum pennellii HOM05D004016 ORTHO05D004732 1.8e-44 183.3 217 53.0
ClCG07G000350 Citrullus lanatus HOM05D004016 ORTHO05D004732 3.0e-44 182.6 203 55.2
PGSC0003DMG400019358 Solanum tuberosum HOM05D004016 ORTHO05D004732 3.0e-44 182.6 218 53.7
Sabra02G0041700 Salix brachista HOM05D004016 ORTHO05D004732 4.0e-44 182.2 221 52.0
AUR62028601 Chenopodium quinoa HOM05D004016 ORTHO05D004732 8.9e-44 181.0 204 53.4
Eucgr.H01463 Eucalyptus grandis HOM05D004016 ORTHO05D004732 1.2e-43 180.6 210 53.8
TWI18G0383 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 1.2e-43 180.6 212 54.2
Rhsim01G0273500 Rhododendron simsii HOM05D004016 ORTHO05D004732 3.4e-43 179.1 208 56.2
Sabra05G0161500 Salix brachista HOM05D004016 ORTHO05D004732 3.4e-43 179.1 216 52.3
Gorai.004G216600 Gossypium raimondii HOM05D004016 ORTHO05D004732 4.4e-43 178.7 208 52.4
HanXRQChr04g0118991 Helianthus annuus HOM05D004016 ORTHO05D004732 4.4e-43 178.7 217 50.7
Nitab4.5_0002928g0010 Nicotiana tabacum HOM05D004016 ORTHO05D004732 4.4e-43 178.7 206 51.9
TWI12G1445 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 7.5e-43 177.9 206 50.0
CsaV3_6G037200 Cucumis sativus L. HOM05D004016 ORTHO05D004732 9.8e-43 177.6 207 53.6
Gohir.A08G186500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.7e-42 176.8 207 52.7
Gohir.D08G204600 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.7e-42 176.8 208 51.9
Gohir.A11G124100 Gossypium hirsutum HOM05D004016 ORTHO05D004732 2.2e-42 176.4 210 51.9
Sc17g0001350 Simmondsia chinensis HOM05D004016 ORTHO05D004732 2.8e-42 176.0 201 51.7
Lalb_Chr06g0162891 Lupinus albus HOM05D004016 ORTHO05D004732 4.9e-42 175.3 203 52.2
THA.LOC104825992 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 4.9e-42 175.3 221 49.8
Phvul.007G173300 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 8.3e-42 174.5 208 53.4
Ca_08613_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 1.1e-41 174.1 205 53.7
Aa31LG5G2350 Aethionema arabicum HOM05D004016 ORTHO05D004732 1.4e-41 173.7 211 48.8
MSTRG.21548 Avicennia marina HOM05D004016 ORTHO05D004732 1.8e-41 173.3 209 50.2
Hund02825 Selenicereus undatus HOM05D004016 ORTHO05D004732 4.1e-41 172.2 214 52.3
Psat3g063280 Pisum sativum HOM05D004016 ORTHO05D004732 7.0e-41 171.4 204 52.5
Oeu040656.1 Olea europaea HOM05D004016 ORTHO05D004732 1.6e-40 170.2 210 50.0
Sed0007164 Sechium edule HOM05D004016 ORTHO05D004732 3.5e-40 169.1 206 52.4
MELO3C014394.2 Cucumis melo HOM05D004016 ORTHO05D004732 4.5e-40 168.7 205 52.7
Migut.D00318 Erythranthe guttata HOM05D004016 ORTHO05D004732 4.5e-40 168.7 213 52.1
Oeu025739.1 Olea europaea HOM05D004016 ORTHO05D004732 4.5e-40 168.7 209 50.2
Hund27940 Selenicereus undatus HOM05D004016 ORTHO05D004732 4.5e-40 168.7 208 52.4
Gohir.D11G129300 Gossypium hirsutum HOM05D004016 ORTHO05D004732 5.9e-40 168.3 207 50.2
arahy.Tifrunner.gnm1.ann1.256EAD Arachis hypogaea HOM05D004016 ORTHO05D004732 7.8e-40 167.9 209 51.2
CAN.G1549.22 Capsicum annuum HOM05D004016 ORTHO05D004732 1.3e-39 167.2 217 49.3
Lj1g0004863 Lotus japonicus HOM05D004016 ORTHO05D004732 1.3e-39 167.2 205 50.2
LjContig00056g0010505 Lotus japonicus HOM05D004016 ORTHO05D004732 1.3e-39 167.2 205 50.2
Gorai.007G138300 Gossypium raimondii HOM05D004016 ORTHO05D004732 3.8e-39 165.6 207 49.3
THA.LOC104801244 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 3.8e-39 165.6 216 48.6
CARHR251020 Cardamine hirsuta HOM05D004016 ORTHO05D004732 5.0e-39 165.2 207 48.8
DCAR_018429 Daucus carota HOM05D004016 ORTHO05D004732 5.0e-39 165.2 240 44.2
Sp6g02620 Schrenkiella parvula HOM05D004016 ORTHO05D004732 8.6e-39 164.5 207 50.2
Actinidia24906 Actinidia chinensis HOM05D004016 ORTHO05D004732 1.5e-38 163.7 174 54.0
DCAR_002723 Daucus carota HOM05D004016 ORTHO05D004732 1.5e-38 163.7 220 48.6
Glyma.02G146200 Glycine max HOM05D004016 ORTHO05D004732 2.5e-38 162.9 210 53.8
Glyma.10G027800 Glycine max HOM05D004016 ORTHO05D004732 4.3e-38 162.2 213 54.0
Lj5g0005099 Lotus japonicus HOM05D004016 ORTHO05D004732 4.3e-38 162.2 211 48.3
Aqoxy2G03410 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 5.6e-38 161.8 201 50.2
CAN.G1549.11 Capsicum annuum HOM05D004016 ORTHO05D004732 5.6e-38 161.8 217 47.5
Peaxi162Scf00783g00017 Petunia axillaris HOM05D004016 ORTHO05D004732 5.6e-38 161.8 220 49.1
CAN.G1549.21 Capsicum annuum HOM05D004016 ORTHO05D004732 9.5e-38 161.0 217 48.4
Peaxi162Scf01248g00010 Petunia axillaris HOM05D004016 ORTHO05D004732 1.2e-37 160.6 204 49.5
Sopen06g035580 Solanum pennellii HOM05D004016 ORTHO05D004732 3.6e-37 159.1 215 46.0
AT4G02715 Arabidopsis thaliana HOM05D004016 ORTHO05D004732 6.1e-37 158.3 206 49.5
Thhalv10028968m.g Eutrema salsugineum HOM05D004016 ORTHO05D004732 8.0e-37 157.9 209 51.7
MSTRG.17454 Avicennia marina HOM05D004016 ORTHO05D004732 6.8e-36 154.8 205 48.8
PGR044G0005 Punica granatum HOM05D004016 ORTHO05D004732 6.8e-36 154.8 211 49.3
VMungo0720G0880 Vigna mungo HOM05D004016 ORTHO05D004732 6.8e-36 154.8 195 52.8
Carub.0006s3440 Capsella rubella HOM05D004016 ORTHO05D004732 1.5e-35 153.7 206 48.5
Nitab4.5_0009529g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 1.5e-35 153.7 177 52.5
Solyc06g084200.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 2.0e-35 153.3 212 45.8
TPR.G27140 Trifolium pratense HOM05D004016 ORTHO05D004732 2.0e-35 153.3 205 47.3
AL6G50300 Arabidopsis lyrata HOM05D004016 ORTHO05D004732 2.6e-35 152.9 206 48.5
Medtr7g095160 Medicago truncatula HOM05D004016 ORTHO05D004732 2.6e-35 152.9 200 49.5
Nitab4.5_0008064g0020 Nicotiana tabacum HOM05D004016 ORTHO05D004732 3.4e-35 152.5 211 49.8
Glyma.03G155700 Glycine max HOM05D004016 ORTHO05D004732 4.4e-35 152.1 203 47.8
Migut.N02038 Erythranthe guttata HOM05D004016 ORTHO05D004732 5.8e-35 151.8 207 49.3
CiPaw.08G107200 Carya illinoinensis HOM05D004016 ORTHO05D004732 7.5e-35 151.4 179 50.8
Phvul.001G153100 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 7.5e-35 151.4 205 49.8
Glyma.19G157800 Glycine max HOM05D004016 ORTHO05D004732 1.3e-34 150.6 203 46.8
Oeu028065.1 Olea europaea HOM05D004016 ORTHO05D004732 1.7e-34 150.2 219 45.7
Rhsim13G0026600 Rhododendron simsii HOM05D004016 ORTHO05D004732 2.9e-34 149.4 208 49.0
PGSC0003DMG400020056 Solanum tuberosum HOM05D004016 ORTHO05D004732 6.4e-34 148.3 215 44.7
PSO761G0274 Papaver somniferum HOM05D004016 ORTHO05D004732 8.3e-34 147.9 217 48.8
Nitab4.5_0005172g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 1.1e-33 147.5 210 49.0
BcaB01g02015 Brassica carinata HOM05D004016 ORTHO05D004732 1.4e-33 147.1 205 48.8
vmacro02591 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 1.4e-33 147.1 209 50.2
BcaB05g23659 Brassica carinata HOM05D004016 ORTHO05D004732 3.2e-33 146.0 213 46.0
QL12p021105 Quercus lobata HOM05D004016 ORTHO05D004732 7.0e-33 144.8 234 45.7
VMungo1383G1854 Vigna mungo HOM05D004016 ORTHO05D004732 9.2e-33 144.4 207 47.8
C09p02200 Brassica napus HOM05D004016 ORTHO05D004732 1.7e-31 140.2 199 44.7
ECA236G1435 Erigeron canadensis HOM05D004016 ORTHO05D004732 3.9e-31 139.0 205 43.9
Psat6g059840 Pisum sativum HOM05D004016 ORTHO05D004732 8.6e-31 137.9 194 44.8
PSO210G5515 Papaver somniferum HOM05D004016 ORTHO05D004732 1.9e-30 136.7 217 46.1
TPR.G24294 Trifolium pratense HOM05D004016 ORTHO05D004732 1.2e-29 134.0 217 42.4
BcaC04g24008 Brassica carinata HOM05D004016 ORTHO05D004732 1.6e-29 133.7 199 42.7
BolC9t53149H Brassica oleracea HOM05D004016 ORTHO05D004732 1.6e-29 133.7 199 42.7
C02p39140 Brassica napus HOM05D004016 ORTHO05D004732 4.7e-29 132.1 202 45.5
SGA_v2.0_scaffold1G00497 Striga asiatica HOM05D004016 ORTHO05D004732 6.2e-29 131.7 197 48.2
BcaC03g16166 Brassica carinata HOM05D004016 ORTHO05D004732 3.1e-28 129.4 200 45.0
ClCG09G007200 Citrullus lanatus HOM05D004016 ORTHO05D004732 4.0e-28 129.0 202 43.6
SGA_v2.0_scaffold138G35322 Striga asiatica HOM05D004016 ORTHO05D004732 1.5e-27 127.1 189 46.6
BolC2t09924H Brassica oleracea HOM05D004016 ORTHO05D004732 5.8e-27 125.2 193 46.1
ATR0697G155 Amborella trichopoda HOM05D004016 ORTHO05D004732 7.5e-27 124.8 275 34.9
HPP92_013967 Vanilla planifolia HOM05D004016 ORTHO05D004732 1.3e-26 124.0 205 41.5
A09p02110 Brassica napus HOM05D004016 ORTHO05D004732 1.7e-26 123.6 201 44.3
Medtr1g071810 Medicago truncatula HOM05D004016 ORTHO05D004732 6.4e-26 121.7 298 32.2
BraA09t35860Z Brassica rapa HOM05D004016 ORTHO05D004732 2.4e-25 119.8 204 44.1
Os03g0160200 Oryza sativa ssp. japonica HOM05D004016 ORTHO05D004732 7.0e-25 118.2 210 44.3
Oeu013891.1 Olea europaea HOM05D004016 ORTHO05D004732 9.2e-25 117.9 156 48.1
ECA247G1708 Erigeron canadensis HOM05D004016 ORTHO05D004732 3.9e-23 112.5 207 39.1
Zm00001eb403300 Zea mays HOM05D004016 ORTHO05D004732 1.9e-22 110.2 207 42.0
Psat1g067520 Pisum sativum HOM05D004016 ORTHO05D004732 3.3e-22 109.4 173 42.8
CsaV3_7G027970 Cucumis sativus L. HOM05D004016 ORTHO05D004732 9.5e-22 107.8 204 40.7
MELO3C015815.2 Cucumis melo HOM05D004016 ORTHO05D004732 1.8e-20 103.6 202 40.1
unitig_0.g129 Utricularia gibba HOM05D004016 ORTHO05D004732 5.2e-20 102.1 148 44.6
Oeu034146.1 Olea europaea HOM05D004016 ORTHO05D004732 6.8e-20 101.7 176 39.2
A02p24930 Brassica napus HOM05D004016 ORTHO05D004732 8.9e-20 101.3 193 43.5
BraA02t07483Z Brassica rapa HOM05D004016 ORTHO05D004732 8.9e-20 101.3 193 43.5
Zm00001eb047890 Zea mays HOM05D004016 ORTHO05D004732 9.9e-19 97.8 157 45.2
Sed0001131 Sechium edule HOM05D004016 ORTHO05D004732 4.9e-18 95.5 205 36.1
Gorai.009G456000 Gossypium raimondii HOM05D004016 ORTHO05D004732 6.4e-18 95.1 130 49.2
A03p30890 Brassica napus HOM05D004016 ORTHO05D004732 4.6e-16 89.0 85 55.3
GSVIVG01001172001 Vitis vinifera HOM05D004016 ORTHO05D004732 4.3e-14 82.4 63 65.1
Nn4g22231 Nelumbo nucifera HOM05D004016 ORTHO05D004732 1.2e-13 80.9 69 63.8
BcaC01g06736 Brassica carinata HOM05D002144 ORTHO05D002170 2.1e-13 80.1 82 54.9
SEGI_39625 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 1.4e-12 77.4 98 44.9
VMungo1383G2032 Vigna mungo HOM05D004016 ORTHO05D004732 1.8e-12 77.0 98 50.0
BcaC01g06738 Brassica carinata HOM05D004016 ORTHO05D004732 8.9e-12 74.7 45 75.6
SEGI_04941 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 7.8e-08 61.6 152 33.6
SEGI_40815 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 1.7e-07 60.5 81 48.1
Mapoly0128s0012 Marchantia polymorpha HOM05D004016 ORTHO05D004732 3.0e-07 59.7 146 37.7
SMO134G0037 Selaginella moellendorffii HOM05D004016 ORTHO05D004732 3.0e-07 59.7 111 40.5
AagrBONN_evm.TU.Sc2ySwM_362.2843 Anthoceros agrestis HOM05D004016 ORTHO05D004732 1.5e-06 57.4 58 56.9
SMO347G0037 Selaginella moellendorffii HOM05D004016 ORTHO05D004732 1.9e-06 57.0 85 38.8


User provided reference genes

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