Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 1.2e-109 399.8 196 100.0
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 5.4e-62 241.5 129 89.1
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 1.0e-60 237.3 166 72.9
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 1.2e-58 230.3 129 86.8
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 1.4e-57 226.9 129 83.7
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.5e-56 223.4 129 85.3
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 1.5e-56 223.4 130 83.1
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 2.0e-56 223.0 142 78.2
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 4.4e-56 221.9 127 83.5
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 4.4e-56 221.9 128 82.8
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 7.6e-56 221.1 128 82.8
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 7.6e-56 221.1 129 84.5
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 7.6e-56 221.1 128 82.8
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 7.6e-56 221.1 128 82.8
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 1.3e-55 220.3 129 82.9
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 1.3e-55 220.3 128 82.8
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.3e-55 220.3 128 82.8
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.3e-55 220.3 128 82.8
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.3e-55 220.3 128 82.8
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.7e-55 219.9 128 82.0
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.7e-55 219.9 128 82.0
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 1.7e-55 219.9 128 82.0
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 1.7e-55 219.9 123 87.0
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 2.2e-55 219.5 137 81.0
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 2.2e-55 219.5 130 80.0
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 2.2e-55 219.5 123 84.6
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 2.9e-55 219.2 129 81.4
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 2.9e-55 219.2 129 82.9
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 2.9e-55 219.2 129 84.5
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 3.8e-55 218.8 136 80.1
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 3.8e-55 218.8 129 82.2
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 6.4e-55 218.0 142 76.8
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 6.4e-55 218.0 125 84.0
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 8.4e-55 217.6 129 82.9
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 1.1e-54 217.2 127 83.5
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.1e-54 217.2 137 78.8
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 1.4e-54 216.9 123 83.7
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 1.4e-54 216.9 131 84.0
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 1.4e-54 216.9 130 79.2
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 1.4e-54 216.9 129 79.8
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 1.4e-54 216.9 129 82.9
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 1.9e-54 216.5 127 83.5
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 2.4e-54 216.1 129 78.3
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 2.4e-54 216.1 132 80.3
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 2.4e-54 216.1 128 82.0
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 2.4e-54 216.1 128 82.0
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 3.2e-54 215.7 130 81.5
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 4.2e-54 215.3 129 79.1
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 4.2e-54 215.3 129 83.7
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 4.2e-54 215.3 129 82.2
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 4.2e-54 215.3 129 82.2
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 5.4e-54 214.9 134 79.1
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 7.1e-54 214.5 129 79.1
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 7.1e-54 214.5 128 78.9
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 9.2e-54 214.2 129 79.8
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 9.2e-54 214.2 129 79.1
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 9.2e-54 214.2 130 80.8
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 9.2e-54 214.2 129 79.1
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 9.2e-54 214.2 130 80.8
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 9.2e-54 214.2 123 82.9
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 1.2e-53 213.8 129 81.4
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 1.6e-53 213.4 131 80.2
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 2.1e-53 213.0 130 80.0
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 2.1e-53 213.0 129 79.1
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 2.1e-53 213.0 130 80.0
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 2.1e-53 213.0 129 79.1
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 2.1e-53 213.0 129 79.1
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 2.1e-53 213.0 110 89.1
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 2.7e-53 212.6 130 80.0
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 3.5e-53 212.2 129 80.6
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 4.6e-53 211.8 129 77.5
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 4.6e-53 211.8 129 79.8
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 6.0e-53 211.5 129 80.6
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 6.0e-53 211.5 125 81.6
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 6.0e-53 211.5 128 79.7
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 7.8e-53 211.1 110 89.1
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 7.8e-53 211.1 149 69.8
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 7.8e-53 211.1 149 69.8
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 7.8e-53 211.1 135 75.6
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 1.0e-52 210.7 130 79.2
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 1.3e-52 210.3 110 88.2
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.7e-52 209.9 110 88.2
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 2.3e-52 209.5 129 78.3
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 3.0e-52 209.1 110 87.3
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 3.9e-52 208.8 110 86.4
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 6.6e-52 208.0 124 79.8
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 8.7e-52 207.6 116 84.5
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 8.7e-52 207.6 131 79.4
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 1.1e-51 207.2 127 78.7
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 1.1e-51 207.2 129 78.3
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 1.1e-51 207.2 128 78.9
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 1.5e-51 206.8 129 78.3
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.5e-51 206.8 128 77.3
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 1.9e-51 206.5 116 82.8
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 1.9e-51 206.5 127 78.0
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 2.5e-51 206.1 129 77.5
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 4.3e-51 205.3 135 74.1
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 4.3e-51 205.3 108 87.0
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 5.6e-51 204.9 131 78.6
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 5.6e-51 204.9 129 78.3
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 7.3e-51 204.5 131 78.6
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 9.6e-51 204.1 110 87.3
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 9.6e-51 204.1 110 87.3
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 1.2e-50 203.8 127 78.0
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 1.6e-50 203.4 127 77.2
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 1.6e-50 203.4 126 77.0
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 1.6e-50 203.4 132 77.3
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 2.1e-50 203.0 132 78.0
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 2.8e-50 202.6 136 73.5
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 2.8e-50 202.6 107 85.0
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 3.6e-50 202.2 131 77.1
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 3.6e-50 202.2 125 78.4
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 3.6e-50 202.2 124 79.0
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 4.7e-50 201.8 105 89.5
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 8.1e-50 201.1 120 78.3
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 8.1e-50 201.1 110 86.4
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 1.8e-49 199.9 114 80.7
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 2.4e-49 199.5 114 79.8
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 4.0e-49 198.7 132 75.0
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 6.9e-49 198.0 125 76.0
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 6.9e-49 198.0 126 75.4
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 9.0e-49 197.6 135 71.9
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 9.0e-49 197.6 135 71.9
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 9.0e-49 197.6 135 71.1
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 1.5e-48 196.8 132 74.2
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 2.6e-48 196.1 125 77.6
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 2.6e-48 196.1 132 74.2
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 5.8e-48 194.9 132 76.5
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 7.6e-48 194.5 127 73.2
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 7.6e-48 194.5 130 73.8
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 2.9e-47 192.6 127 72.4
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 2.9e-47 192.6 127 71.7
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 2.9e-47 192.6 118 78.0
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 1.9e-46 189.9 107 80.4
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 3.2e-46 189.1 120 73.3
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 5.4e-46 188.3 119 75.6
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 1.2e-45 187.2 120 71.7
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 6.0e-45 184.9 127 69.3
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 7.8e-45 184.5 185 55.7
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 3.0e-44 182.6 120 72.5
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 6.6e-44 181.4 121 69.4
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 1.9e-43 179.9 108 77.8
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 6.4e-39 164.9 147 57.8
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 5.4e-38 161.8 120 65.8
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 6.7e-36 154.8 129 60.5
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 2.5e-35 152.9 119 58.8
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 1.6e-26 123.6 119 52.1
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 1.6e-26 123.6 97 59.8
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 8.2e-26 121.3 92 54.3
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 2.4e-25 119.8 143 51.7
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.5e-24 117.1 140 48.6
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 5.8e-24 115.2 90 56.7
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 6.5e-23 111.7 62 88.7
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 8.4e-23 111.3 75 72.0
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 1.1e-22 110.9 119 44.5
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.4e-22 110.5 139 41.7
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.4e-22 110.5 139 41.7
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 1.9e-22 110.2 63 82.5
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 5.5e-22 108.6 68 72.1
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 2.7e-21 106.3 106 55.7
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 4.6e-21 105.5 55 81.8
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.0e-20 104.4 127 40.2
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 3.9e-20 102.4 107 46.7
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 8.7e-20 101.3 65 73.8
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 1.3e-15 87.4 47 87.2
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.7e-15 87.0 93 51.6
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 5.0e-15 85.5 63 66.7
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 5.0e-15 85.5 55 76.4
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 1.4e-14 84.0 68 61.8
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 7.9e-13 78.2 45 84.4
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 6.7e-12 75.1 58 55.2
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 4.3e-11 72.4 62 62.9
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 2.2e-10 70.1 68 44.1
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 1.2e-08 64.3 65 43.1
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 1.2e-08 64.3 65 43.1
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 1.5e-08 63.9 78 46.2


User provided reference genes

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