Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G0539 Trochodendron aralioides HOM05D005420 ORTHO05D006524 4.9e-160 567.8 293 100.0
TAR365G1242 Trochodendron aralioides HOM05D005420 ORTHO05D006524 4.8e-131 471.5 293 85.7
Prupe.7G269700 Prunus persica HOM05D005420 ORTHO05D006524 4.7e-110 401.7 296 75.0
CSS0017727 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 2.2e-107 392.9 298 73.8
PSO675G2924 Papaver somniferum HOM05D005420 ORTHO05D006524 5.0e-104 381.7 293 71.3
RcHm_v2.0_Chr2g0084451 Rosa chinensis HOM05D005420 ORTHO05D006524 6.5e-104 381.3 224 85.7
Dinv33245 Davidia involucrata HOM05D005420 ORTHO05D006524 8.5e-104 380.9 221 87.8
MBI07_g10354_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 8.5e-104 380.9 298 72.1
QL10p064332 Quercus lobata HOM05D005420 ORTHO05D006524 1.5e-103 380.2 310 69.7
CSS0022736 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 5.5e-103 378.3 220 86.8
PSO732G0217 Papaver somniferum HOM05D005420 ORTHO05D006524 9.4e-103 377.5 296 72.6
FvH4_1g00160 Fragaria vesca HOM05D005420 ORTHO05D006524 1.6e-102 376.7 286 72.7
FAN28G0609 Fragaria x ananassa HOM05D005420 ORTHO05D006524 1.6e-102 376.7 286 72.7
Ciclev10012405m.g Citrus clementina HOM05D005420 ORTHO05D006524 2.1e-102 376.3 299 68.9
Eucgr.H01455 Eucalyptus grandis HOM05D005420 ORTHO05D006524 3.6e-102 375.6 292 70.5
MD00G1087500 Malus domestica HOM05D005420 ORTHO05D006524 4.7e-102 375.2 295 71.5
CANSAT56G1087 Cannabis sativa HOM05D005420 ORTHO05D006524 8.0e-102 374.4 299 72.2
Atru.chr12.1712 Acer truncatum HOM05D005420 ORTHO05D006524 1.4e-101 373.6 301 68.4
CiPaw.02G124600 Carya illinoinensis HOM05D005420 ORTHO05D006524 1.4e-101 373.6 291 70.8
FAN26G3138 Fragaria x ananassa HOM05D005420 ORTHO05D006524 1.4e-101 373.6 286 72.0
DCAR_005460 Daucus carota HOM05D005420 ORTHO05D006524 1.8e-101 373.2 264 78.0
MD15G1143300 Malus domestica HOM05D005420 ORTHO05D006524 4.0e-101 372.1 304 70.1
arahy.Tifrunner.gnm1.ann1.D6NWCJ Arachis hypogaea HOM05D005420 ORTHO05D006524 8.8e-101 370.9 228 83.8
arahy.Tifrunner.gnm1.ann1.EMGW5K Arachis hypogaea HOM05D005420 ORTHO05D006524 8.8e-101 370.9 228 83.8
VMungo1215G3385 Vigna mungo HOM05D005420 ORTHO05D006524 8.8e-101 370.9 262 76.3
CiPaw.01G201600 Carya illinoinensis HOM05D005420 ORTHO05D006524 1.2e-100 370.5 214 86.9
Duzib177G0155 Durio zibethinus HOM05D005420 ORTHO05D006524 1.2e-100 370.5 293 68.6
Glyma.07G273700 Glycine max HOM05D005420 ORTHO05D006524 1.2e-100 370.5 224 84.4
FAN23G1410 Fragaria x ananassa HOM05D005420 ORTHO05D006524 1.5e-100 370.2 286 72.4
GSVIVG01038249001 Vitis vinifera HOM05D005420 ORTHO05D006524 3.4e-100 369.0 214 88.3
Cfa008513 Carpinus fangiana HOM05D005420 ORTHO05D006524 5.7e-100 368.2 214 86.4
Cc03_g15990 Coffea canephora HOM05D005420 ORTHO05D006524 5.7e-100 368.2 301 68.4
Gohir.A02G106300 Gossypium hirsutum HOM05D005420 ORTHO05D006524 9.8e-100 367.5 293 68.6
Rhsim09G0003700 Rhododendron simsii HOM05D005420 ORTHO05D006524 9.8e-100 367.5 257 77.4
Gohir.D03G071700 Gossypium hirsutum HOM05D005420 ORTHO05D006524 1.3e-99 367.1 293 69.6
Thecc.05G186000 Theobroma cacao HOM05D005420 ORTHO05D006524 1.3e-99 367.1 296 68.9
Aqoxy1G01859 Aquilegia oxysepala HOM05D005420 ORTHO05D006524 1.7e-99 366.7 299 70.6
Glyma.17G000800 Glycine max HOM05D005420 ORTHO05D006524 2.2e-99 366.3 283 70.3
Gorai.003G088300 Gossypium raimondii HOM05D005420 ORTHO05D006524 2.8e-99 365.9 293 69.6
ATR0743G098 Amborella trichopoda HOM05D005420 ORTHO05D006524 6.3e-99 364.8 293 69.3
CDE09G0694 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 6.3e-99 364.8 294 68.0
Potri.013G084300 Populus trichocarpa HOM05D005420 ORTHO05D006524 6.3e-99 364.8 223 80.7
MSTRG.24552 Avicennia marina HOM05D005420 ORTHO05D006524 1.1e-98 364.0 262 74.0
ECA248G1232 Erigeron canadensis HOM05D005420 ORTHO05D006524 7.0e-98 361.3 233 82.0
Manes.12G003300 Manihot esculenta HOM05D005420 ORTHO05D006524 1.6e-97 360.1 223 81.6
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 1.6e-97 360.1 227 81.9
Sabra13G0078900 Salix brachista HOM05D005420 ORTHO05D006524 2.0e-97 359.8 223 80.3
TWI36G0345 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 2.0e-97 359.8 214 85.0
Peaxi162Scf01205g00032 Petunia axillaris HOM05D005420 ORTHO05D006524 2.7e-97 359.4 245 77.1
ClCG09G014850 Citrullus lanatus HOM05D005420 ORTHO05D006524 3.5e-97 359.0 277 71.8
Sed0010932 Sechium edule HOM05D005420 ORTHO05D006524 5.9e-97 358.2 287 67.2
CsaV3_7G022350 Cucumis sativus L. HOM05D005420 ORTHO05D006524 2.3e-96 356.3 248 75.4
HanXRQChr11g0343501 Helianthus annuus HOM05D005420 ORTHO05D006524 2.3e-96 356.3 250 76.0
Lj6C285T2 Lonicera japonica HOM05D005420 ORTHO05D006524 2.3e-96 356.3 197 91.9
Phvul.003G074600 Phaseolus vulgaris HOM05D005420 ORTHO05D006524 3.8e-96 355.5 258 72.5
Lj4g0016379 Lotus japonicus HOM05D005420 ORTHO05D006524 8.6e-96 354.4 259 73.0
GSVIVG01026140001 Vitis vinifera HOM05D005420 ORTHO05D006524 8.6e-96 354.4 214 84.1
Migut.G00921 Erythranthe guttata HOM05D005420 ORTHO05D006524 1.9e-95 353.2 213 83.6
SalBow3G4646 Salvia bowleyana HOM05D005420 ORTHO05D006524 1.9e-95 353.2 275 69.8
AUR62023710 Chenopodium quinoa HOM05D005420 ORTHO05D006524 4.2e-95 352.1 214 82.7
PGR119G0486 Punica granatum HOM05D005420 ORTHO05D006524 4.2e-95 352.1 195 90.8
Ah.07g203200 Amaranthus hybridus HOM05D005420 ORTHO05D006524 1.2e-94 350.5 284 68.7
Solyc08g015620.3 Solanum lycopersicum HOM05D005420 ORTHO05D006524 1.2e-94 350.5 273 71.1
Sopen08g005610 Solanum pennellii HOM05D005420 ORTHO05D006524 1.2e-94 350.5 273 71.1
AUR62002482 Chenopodium quinoa HOM05D005420 ORTHO05D006524 1.6e-94 350.1 214 82.7
HanXRQChr01g0023651 Helianthus annuus HOM05D005420 ORTHO05D006524 2.1e-94 349.7 260 74.6
Nitab4.5_0000013g0040 Nicotiana tabacum HOM05D005420 ORTHO05D006524 2.1e-94 349.7 270 70.7
EL10Ac3g06165 Beta vulgaris HOM05D005420 ORTHO05D006524 2.8e-94 349.4 299 67.6
Actinidia34566 Actinidia chinensis HOM05D005420 ORTHO05D006524 4.7e-94 348.6 269 72.1
Nn7g37463 Nelumbo nucifera HOM05D005420 ORTHO05D006524 6.1e-94 348.2 268 72.0
Nitab4.5_0008205g0010 Nicotiana tabacum HOM05D005420 ORTHO05D006524 6.1e-94 348.2 273 69.6
Lsat_1_v5_gn_1_76981 Lactuca sativa HOM05D005420 ORTHO05D006524 8.0e-94 347.8 220 80.9
Cpa.g.sc151.6 Carica papaya HOM05D005420 ORTHO05D006524 1.0e-93 347.4 207 85.5
unitig_27.g25143 Utricularia gibba HOM05D005420 ORTHO05D006524 2.3e-93 346.3 252 72.6
Duzib128G1088 Durio zibethinus HOM05D005420 ORTHO05D006524 3.0e-93 345.9 195 88.7
HPP92_024700 Vanilla planifolia HOM05D005420 ORTHO05D006524 6.8e-93 344.7 240 75.0
Thhalv10001571m.g Eutrema salsugineum HOM05D005420 ORTHO05D006524 8.9e-93 344.4 293 66.6
Aa31LG1G25640 Aethionema arabicum HOM05D005420 ORTHO05D006524 2.0e-92 343.2 215 80.5
C03p29330 Brassica napus HOM05D005420 ORTHO05D006524 2.6e-92 342.8 290 66.9
BolC3t15280H Brassica oleracea HOM05D005420 ORTHO05D006524 2.6e-92 342.8 290 66.9
unitig_699.g19464 Utricularia gibba HOM05D005420 ORTHO05D006524 3.4e-92 342.4 193 88.1
Os01g0338600 Oryza sativa ssp. japonica HOM05D005420 ORTHO05D006524 4.4e-92 342.0 258 71.3
Actinidia18399 Actinidia chinensis HOM05D005420 ORTHO05D006524 7.5e-92 341.3 263 71.5
Carub.0005s2660 Capsella rubella HOM05D005420 ORTHO05D006524 9.8e-92 340.9 293 65.5
BcaC02g12350 Brassica carinata HOM05D005420 ORTHO05D006524 1.3e-91 340.5 291 67.0
AT2G43945 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 1.7e-91 340.1 291 66.0
A03p24600 Brassica napus HOM05D005420 ORTHO05D006524 1.7e-91 340.1 291 66.0
C04p04880 Brassica napus HOM05D005420 ORTHO05D006524 2.2e-91 339.7 291 67.0
TWI36G1305 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 2.8e-91 339.3 279 68.8
BcaB06g29350 Brassica carinata HOM05D005420 ORTHO05D006524 3.7e-91 339.0 216 80.6
AL4G42820 Arabidopsis lyrata HOM05D005420 ORTHO05D006524 1.4e-90 337.0 290 65.9
BraA05t19397Z Brassica rapa HOM05D005420 ORTHO05D006524 1.4e-90 337.0 294 66.7
BraA03t11665Z Brassica rapa HOM05D005420 ORTHO05D006524 1.8e-90 336.7 294 65.6
Carub.0004s2651 Capsella rubella HOM05D005420 ORTHO05D006524 1.8e-90 336.7 291 66.0
CARHR139120 Cardamine hirsuta HOM05D005420 ORTHO05D006524 1.8e-90 336.7 298 65.1
Psat4g001320 Pisum sativum HOM05D005420 ORTHO05D006524 4.1e-90 335.5 248 71.0
A05p04100 Brassica napus HOM05D005420 ORTHO05D006524 5.4e-90 335.1 296 65.2
BolC4t22118H Brassica oleracea HOM05D005420 ORTHO05D006524 7.0e-90 334.7 291 66.7
Nn3g18334 Nelumbo nucifera HOM05D005420 ORTHO05D006524 1.2e-89 334.0 252 75.0
BcaB02g08884 Brassica carinata HOM05D005420 ORTHO05D006524 1.6e-89 333.6 206 82.0
Dinv24753 Davidia involucrata HOM05D005420 ORTHO05D006524 1.6e-89 333.6 250 74.8
Aa31LG10G14100 Aethionema arabicum HOM05D005420 ORTHO05D006524 2.0e-89 333.2 292 64.0
SGA_v2.0_scaffold12G06218 Striga asiatica HOM05D005420 ORTHO05D006524 2.7e-89 332.8 301 63.8
THA.LOC104804283 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 2.7e-89 332.8 215 78.6
Zm00001eb159810 Zea mays HOM05D005420 ORTHO05D006524 5.9e-89 331.6 215 81.9
THA.LOC104802345 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 3.9e-88 328.9 296 64.9
AT3G59870 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 1.9e-87 326.6 294 63.6
Sp4g26040 Schrenkiella parvula HOM05D005420 ORTHO05D006524 1.9e-87 326.6 280 65.7
SMO367G0538 Selaginella moellendorffii HOM05D005420 ORTHO05D006524 1.1e-82 310.8 185 83.2
Mapoly0136s0029 Marchantia polymorpha HOM05D005420 ORTHO05D006524 1.4e-82 310.5 185 84.9
Pp3c8_21410 Physcomitrium patens HOM05D005420 ORTHO05D006524 2.4e-82 309.7 184 82.1
SEGI_26827 Sequoiadendron giganteum HOM05D005420 ORTHO05D006524 1.6e-81 307.0 296 63.9
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 2.7e-81 306.2 344 52.9
Pp3c24_16460 Physcomitrium patens HOM05D005420 ORTHO05D006524 1.0e-80 304.3 273 63.7
Migut.N03031 Erythranthe guttata HOM05D005420 ORTHO05D006524 1.2e-76 290.8 253 66.0
Manes.13G003200 Manihot esculenta HOM05D005420 ORTHO05D006524 2.2e-75 286.6 157 92.4
TPR.G6015 Trifolium pratense HOM05D005420 ORTHO05D006524 2.9e-75 286.2 270 63.7
Sc25g0003040 Simmondsia chinensis HOM05D005420 ORTHO05D006524 8.6e-72 274.6 174 79.9
Hund22588 Selenicereus undatus HOM05D005420 ORTHO05D006524 1.4e-69 267.3 247 64.4
Medtr4g134910 Medicago truncatula HOM05D005420 ORTHO05D006524 1.7e-67 260.4 151 87.4
Lalb_Chr18g0044961 Lupinus albus HOM05D005420 ORTHO05D006524 4.1e-66 255.8 134 96.3
Zm00001eb356860 Zea mays HOM05D005420 ORTHO05D006524 1.1e-63 247.7 237 59.5
MCO05G102 Micromonas commoda HOM05D005420 ORTHO05D006524 2.5e-63 246.5 160 75.0
Cre16.g676450 Chlamydomonas reinhardtii HOM05D005420 ORTHO05D006524 3.1e-61 239.6 192 65.1
Oeu022910.1 Olea europaea HOM05D005420 ORTHO05D006524 5.8e-60 235.3 135 86.7
Atru.chr12.1711 Acer truncatum HOM05D005420 ORTHO05D006524 1.7e-59 233.8 193 68.9
PRCOL_00006877 Prasinoderma coloniale HOM05D005420 ORTHO05D006524 2.9e-59 233.0 160 71.2
Ca_13540_v3 Cicer arietinum L. HOM05D005420 ORTHO05D006524 1.3e-54 217.6 221 57.5
AagrBONN_evm.TU.Sc2ySwM_228.1821 Anthoceros agrestis HOM05D005420 ORTHO05D006524 1.1e-45 188.0 120 77.5
CDE02G3676 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 1.1e-39 167.9 220 48.6
MBI07_g42072_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 1.5e-39 167.5 89 94.4
Sed0016168 Sechium edule HOM05D005420 ORTHO05D006524 1.3e-38 164.5 90 93.3
Eucgr.L00810 Eucalyptus grandis HOM05D005420 ORTHO05D006524 2.9e-35 153.3 177 52.5
Pp3c20_1670 Physcomitrium patens HOM05D005420 ORTHO05D006524 5.5e-34 149.1 158 52.5
Eucgr.H01440 Eucalyptus grandis HOM05D005420 ORTHO05D006524 1.9e-31 140.6 177 49.2
Lsat_1_v5_gn_1_75001 Lactuca sativa HOM05D005420 ORTHO05D006524 1.5e-23 114.4 78 71.8
MSTRG.9265 Avicennia marina HOM05D005420 ORTHO05D006524 4.3e-23 112.8 84 66.7
Lsat_1_v5_gn_5_160100 Lactuca sativa HOM05D005420 ORTHO05D006524 6.3e-22 109.0 78 67.9
CBR_g10867 Chara braunii HOM05D005420 ORTHO05D006524 4.6e-17 92.8 85 58.8
Sed0003231 Sechium edule HOM05D005420 ORTHO05D006524 2.7e-09 67.0 111 40.5
Lalb_Chr18g0044971 Lupinus albus HOM05D005420 ORTHO05D006524 1.4e-08 64.7 74 48.6


User provided reference genes

Program Settings