Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 0.0e+00 1202.2 637 100.0
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 4.8e-309 1063.9 637 89.8
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 1.1e-225 786.9 631 68.3
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 3.3e-225 785.4 635 70.1
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 5.6e-225 784.6 632 69.3
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 6.8e-223 777.7 639 67.8
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 4.4e-222 775.0 638 66.8
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 4.9e-221 771.5 640 66.1
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 1.6e-219 766.5 621 68.0
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 2.2e-213 746.1 637 64.8
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 3.2e-212 742.3 641 63.0
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 5.4e-212 741.5 639 63.4
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 4.6e-211 738.4 639 63.2
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 7.3e-209 731.1 637 62.6
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 7.3e-209 731.1 639 62.6
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 2.8e-208 729.2 605 66.1
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 4.7e-208 728.4 639 63.5
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 4.7e-208 728.4 639 63.5
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.2e-206 723.8 639 63.7
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 2.0e-206 723.0 640 62.0
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 2.1e-203 713.0 652 60.7
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 2.7e-203 712.6 639 61.8
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 6.0e-203 711.4 639 62.6
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 1.1e-201 707.2 628 62.6
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.8e-199 699.9 640 60.9
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 3.1e-199 699.1 640 60.9
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 6.9e-199 698.0 640 60.9
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 6.9e-199 698.0 639 61.8
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 1.5e-198 696.8 635 60.5
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 3.8e-197 692.2 641 60.2
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 6.4e-197 691.4 652 58.6
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 2.1e-195 686.4 644 61.3
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 2.1e-195 686.4 640 60.8
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 2.7e-195 686.0 652 58.4
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.7e-195 686.0 652 58.4
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 6.0e-195 684.9 666 59.5
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.7e-194 683.3 652 58.1
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.7e-194 683.3 652 58.1
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.3e-194 682.9 652 58.1
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.1e-194 681.8 652 58.3
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.3e-192 677.2 652 57.8
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 6.2e-192 674.9 636 59.0
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 1.4e-191 673.7 643 58.2
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 2.4e-191 672.9 643 58.2
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 3.4e-190 669.1 647 60.4
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 7.6e-190 667.9 638 58.0
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 1.7e-189 666.8 639 57.3
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 6.7e-186 654.8 635 57.2
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 8.7e-186 654.4 652 57.2
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 2.5e-185 652.9 639 57.3
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 5.6e-185 651.7 641 56.3
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 1.6e-184 650.2 656 57.8
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 1.6e-184 650.2 635 59.5
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 8.1e-184 647.9 656 57.9
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 1.1e-183 647.5 657 56.5
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 6.9e-183 644.8 657 56.9
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 1.0e-181 641.0 636 57.2
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 2.9e-181 639.4 626 57.8
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 2.5e-180 636.3 631 56.9
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 5.7e-177 625.2 632 56.6
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 3.4e-174 615.9 635 55.7
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 3.4e-174 615.9 634 54.1
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 1.3e-173 614.0 660 53.9
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 2.9e-173 612.8 660 54.1
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 5.0e-173 612.1 657 53.7
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 7.1e-172 608.2 644 55.3
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 1.6e-171 607.1 632 56.0
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 2.1e-171 606.7 629 56.3
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 2.1e-171 606.7 632 56.2
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 2.1e-171 606.7 629 56.3
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 2.1e-171 606.7 652 55.7
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 2.7e-171 606.3 626 55.8
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 2.7e-171 606.3 641 53.5
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 1.3e-170 604.0 633 56.2
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 3.0e-170 602.8 618 55.5
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 5.1e-170 602.1 638 54.2
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 5.7e-169 598.6 642 54.8
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 1.3e-168 597.4 600 58.3
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 1.0e-165 587.8 656 53.8
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 2.2e-165 586.6 500 63.4
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 2.9e-165 586.3 660 51.7
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 1.1e-164 584.3 652 51.2
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 7.2e-164 581.6 648 52.2
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 2.1e-163 580.1 634 53.2
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 3.6e-163 579.3 560 60.7
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 4.6e-163 578.9 631 53.7
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 4.6e-163 578.9 656 51.4
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 1.4e-162 577.4 625 52.3
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 3.9e-162 575.9 651 52.4
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 1.1e-161 574.3 631 53.7
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 3.4e-158 562.8 653 51.1
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 5.9e-158 562.0 573 56.9
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 1.9e-156 557.0 633 51.2
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 2.1e-155 553.5 594 54.9
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 4.4e-153 545.8 660 50.6
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 7.4e-153 545.0 636 49.8
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 1.8e-151 540.4 650 50.3
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 7.7e-150 535.0 644 49.5
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 1.9e-148 530.4 622 51.1
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 7.2e-148 528.5 635 51.5
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 5.2e-146 522.3 670 47.3
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 3.5e-142 509.6 647 47.4
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 5.0e-141 505.8 664 46.1
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 2.5e-140 503.4 459 61.7
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 3.4e-137 493.0 617 48.5
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 4.8e-136 489.2 670 45.4
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 8.3e-136 488.4 459 60.8
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 4.4e-129 466.1 433 61.7
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 1.7e-128 464.2 430 61.6
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 2.4e-119 433.7 411 58.9
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 2.7e-118 430.3 633 45.7
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 2.8e-107 393.7 625 43.8
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 4.7e-107 392.9 639 41.8
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 7.8e-102 375.6 350 59.4
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 3.1e-98 363.6 611 41.7
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 8.9e-98 362.1 338 59.2
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 1.5e-97 361.3 402 50.7
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 3.4e-97 360.1 623 40.8
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 5.4e-95 352.8 618 40.5
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 2.1e-94 350.9 613 40.1
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 1.3e-93 348.2 611 39.9
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 3.0e-93 347.1 618 40.1
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 6.2e-91 339.3 404 50.2
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 6.8e-90 335.9 625 39.8
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 9.6e-84 315.5 618 37.4
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 8.7e-77 292.4 615 37.6
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 4.8e-75 286.6 685 32.1
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 6.7e-69 266.2 614 35.7
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 8.7e-69 265.8 613 36.1
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 3.3e-68 263.8 613 36.2
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 4.6e-62 243.4 589 35.1
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.6e-54 218.4 479 36.5
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 3.9e-53 213.8 248 51.6
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 1.1e-50 205.7 537 34.1
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 1.4e-50 205.3 376 40.7
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 1.4e-50 205.3 173 65.3
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 1.8e-45 188.3 161 65.8
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 2.6e-41 174.5 661 26.6
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 6.7e-37 159.8 119 68.9
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 1.1e-36 159.1 120 71.7
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 2.2e-35 154.8 114 69.3
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 1.1e-34 152.5 155 55.5
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 7.2e-31 139.8 141 59.6
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 3.6e-30 137.5 160 53.8
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 6.3e-27 126.7 106 62.3
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 6.3e-27 126.7 94 68.1
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 1.4e-26 125.6 365 31.2
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 7.0e-26 123.2 94 67.0
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 2.2e-24 118.2 90 65.6
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 2.7e-22 111.3 161 41.6
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 2.7e-22 111.3 90 62.2
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 1.4e-21 109.0 471 25.1
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 2.3e-21 108.2 74 71.6
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 6.8e-21 106.7 139 48.2
SalBow3G4162 Salvia bowleyana HOM05D001997 ORTHO05D004620 1.2e-20 105.9 96 57.3
Actinidia11446 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.5e-20 105.5 144 48.6
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 2.0e-20 105.1 90 60.0
SalBow3G4229 Salvia bowleyana HOM05D001997 ORTHO05D004620 9.8e-20 102.8 117 52.1
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 2.4e-18 98.2 109 53.2
SGA_v2.0_scaffold4G02500 Striga asiatica HOM05D001997 ORTHO05D004620 1.6e-17 95.5 72 63.9
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 1.9e-15 88.6 218 34.4
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 2.5e-15 88.2 85 49.4
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 2.7e-14 84.7 218 33.9
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 2.7e-14 84.7 218 33.9
C03p28740 Brassica napus HOM05D001997 ORTHO05D004620 2.2e-11 75.1 94 50.0
BcaC05g28816 Brassica carinata HOM05D001997 ORTHO05D004620 1.1e-10 72.8 80 52.5
TPR.G290 Trifolium pratense HOM05D001997 ORTHO05D004620 3.1e-10 71.2 51 62.7
FAN10G4060 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.3e-08 65.9 97 44.3
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 2.3e-08 65.1 88 39.8
BcaB01g03396 Brassica carinata HOM05D001623 ORTHO05D001473 1.9e-07 62.0 50 52.0
BcaC01g05247 Brassica carinata HOM05D001997 ORTHO05D004620 3.3e-07 61.2 70 51.4


User provided reference genes

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