Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 1.9e-309 1065.1 560 100.0
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 3.4e-258 894.8 575 83.8
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 8.0e-244 847.0 596 76.3
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 4.1e-240 834.7 596 75.7
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 3.5e-239 831.6 596 75.7
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 2.3e-238 828.9 595 74.8
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 8.6e-238 827.0 594 74.4
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 1.1e-237 826.6 593 73.9
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 6.2e-236 820.8 594 73.9
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 6.2e-236 820.8 594 74.2
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 5.2e-235 817.8 594 73.9
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 5.2e-235 817.8 594 73.7
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 8.9e-235 817.0 596 73.0
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 1.2e-234 816.6 596 74.0
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.5e-234 816.2 595 73.8
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 2.6e-234 815.5 594 72.6
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 9.8e-234 813.5 596 73.7
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 8.3e-233 810.4 594 74.1
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 2.4e-232 808.9 593 74.2
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 2.1e-231 805.8 599 72.0
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 2.7e-231 805.4 593 72.3
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 1.3e-230 803.1 599 71.8
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 1.3e-230 803.1 595 73.3
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 3.9e-230 801.6 590 73.6
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 3.9e-230 801.6 564 75.9
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 6.6e-230 800.8 593 73.7
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 8.6e-230 800.4 594 73.1
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 1.5e-229 799.7 599 72.5
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 2.8e-228 795.4 596 72.5
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 6.2e-228 794.3 597 72.4
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 6.2e-228 794.3 593 72.8
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 8.1e-228 793.9 593 71.7
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 5.2e-227 791.2 599 72.3
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 6.8e-227 790.8 595 73.1
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 7.6e-226 787.3 590 71.9
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 1.3e-225 786.6 596 70.6
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 1.3e-225 786.6 596 72.1
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 1.3e-225 786.6 599 70.8
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 1.3e-225 786.6 598 71.9
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 1.7e-225 786.2 600 70.5
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 2.2e-225 785.8 603 70.3
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 2.9e-225 785.4 595 71.8
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 3.8e-225 785.0 589 71.0
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 4.9e-225 784.6 599 70.6
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 6.4e-225 784.3 594 71.9
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 1.1e-224 783.5 588 70.9
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 1.4e-224 783.1 591 70.9
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 3.2e-224 781.9 597 71.9
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 3.2e-224 781.9 633 67.9
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 4.1e-224 781.6 598 71.7
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 5.4e-224 781.2 599 70.3
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 5.4e-224 781.2 600 69.8
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 5.4e-224 781.2 595 70.9
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 2.7e-223 778.9 598 71.6
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 3.5e-223 778.5 595 70.6
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 4.6e-223 778.1 595 71.1
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 4.6e-223 778.1 595 70.8
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 7.8e-223 777.3 595 71.1
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 1.3e-222 776.5 599 70.3
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 8.6e-222 773.9 566 73.9
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 1.1e-221 773.5 617 69.5
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 1.5e-221 773.1 599 70.3
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 2.5e-221 772.3 599 69.9
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 2.5e-221 772.3 592 70.1
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 4.3e-221 771.5 596 69.6
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 5.6e-221 771.2 606 69.0
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 7.3e-221 770.8 598 71.1
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 7.3e-221 770.8 591 71.1
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 3.6e-220 768.5 595 71.6
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 1.5e-218 763.1 601 69.7
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 2.0e-218 762.7 601 69.7
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 5.8e-218 761.1 508 79.1
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 7.6e-218 760.8 698 62.0
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 1.3e-217 760.0 698 61.2
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 2.2e-217 759.2 601 69.2
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 6.4e-217 757.7 601 69.6
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 1.4e-216 756.5 596 69.6
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 2.4e-216 755.7 598 69.6
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 7.1e-216 754.2 596 70.3
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 1.2e-215 753.4 601 68.7
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 1.6e-215 753.1 600 68.5
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 2.7e-215 752.3 592 68.8
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 5.1e-214 748.0 601 67.4
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 5.1e-214 748.0 578 70.6
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 1.9e-213 746.1 595 68.4
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 4.3e-213 745.0 595 68.2
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 4.3e-213 745.0 567 71.8
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 1.3e-212 743.4 594 68.0
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 1.3e-212 743.4 592 67.6
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 1.3e-212 743.4 594 68.2
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 2.1e-212 742.7 593 67.6
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 2.1e-212 742.7 594 68.0
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 3.6e-212 741.9 602 67.1
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 3.6e-212 741.9 594 68.0
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 4.8e-212 741.5 594 68.0
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 1.8e-211 739.6 602 66.8
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 1.8e-211 739.6 596 67.8
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 5.3e-211 738.0 602 66.8
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 9.0e-211 737.3 594 68.2
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 2.0e-210 736.1 597 66.8
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 3.4e-210 735.3 570 70.2
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 3.4e-210 735.3 595 68.1
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 5.8e-210 734.6 596 68.1
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 1.3e-209 733.4 595 67.9
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 1.7e-209 733.0 593 67.3
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 3.8e-209 731.9 598 66.7
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 1.1e-208 730.3 594 66.2
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 1.1e-208 730.3 593 67.6
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 2.4e-208 729.2 597 68.2
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 5.4e-208 728.0 597 66.3
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 5.1e-206 721.5 563 69.6
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 1.9e-205 719.5 594 66.8
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 2.1e-204 716.1 589 66.4
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 2.4e-203 712.6 511 74.4
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 2.0e-202 709.5 558 69.0
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 2.3e-198 696.0 563 68.0
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 1.9e-197 693.0 588 64.3
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 1.4e-192 676.8 530 69.8
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 3.4e-186 655.6 605 62.5
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 1.4e-184 650.2 599 60.9
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.5e-168 596.3 478 67.6
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 2.7e-167 592.8 448 72.3
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 2.0e-165 586.6 503 64.0
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 1.4e-158 563.9 433 71.6
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 9.7e-157 557.8 522 60.5
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 8.3e-148 528.1 507 61.7
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 2.4e-147 526.6 367 74.7
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 6.6e-137 491.9 324 79.3
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 8.3e-132 474.9 565 53.6
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 4.0e-126 456.1 594 45.6
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 6.6e-121 438.7 372 64.8
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 9.9e-117 424.9 252 85.7
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.9e-108 396.7 400 59.2
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 2.7e-98 363.6 508 45.7
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 1.9e-96 357.5 309 66.0
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 1.1e-94 351.7 229 77.3
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 1.8e-89 334.3 340 55.9
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 6.9e-78 295.8 203 76.4
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 3.0e-65 253.8 227 66.5
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 3.9e-65 253.4 257 51.0
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 1.5e-61 241.5 245 48.2
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 3.4e-61 240.4 190 68.4
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 5.2e-49 199.9 114 85.1
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 3.7e-47 193.7 266 42.5
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 1.2e-42 178.7 130 70.8
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 5.7e-32 143.3 137 59.1
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 8.0e-26 122.9 107 58.9
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 4.9e-23 113.6 105 58.1
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 1.8e-17 95.1 52 92.3
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 1.8e-17 95.1 52 92.3
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.3e-17 94.7 50 86.0
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 3.1e-17 94.4 184 39.7
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.1e-14 85.9 177 40.1
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 4.1e-14 84.0 52 84.6
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.3e-12 79.0 60 70.0
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 1.6e-10 72.0 57 59.6
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 1.2e-08 65.9 30 100.0
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 1.2e-08 65.9 30 100.0
COL.COLO4_16027 Corchorus olitorius HOM05D004172 ORTHO05D159660 4.1e-06 57.4 51 66.7


User provided reference genes

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