Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G0424 Trochodendron aralioides HOM05D004884 ORTHO05D005873 3.3e-80 301.6 148 100.0
MBI04_g07835_MAGBIO Magnolia biondii HOM05D004884 ORTHO05D005873 1.3e-76 289.7 148 93.9
Aqoxy1G02408 Aquilegia oxysepala HOM05D004884 ORTHO05D005873 3.2e-75 285.0 148 91.2
PSO170G2441 Papaver somniferum HOM05D004884 ORTHO05D005873 3.9e-73 278.1 146 88.4
PSO455G0277 Papaver somniferum HOM05D004884 ORTHO05D005873 8.8e-73 276.9 146 87.7
Nn2g12037 Nelumbo nucifera HOM05D004884 ORTHO05D005873 2.6e-72 275.4 148 87.8
GSVIVG01017313001 Vitis vinifera HOM05D004884 ORTHO05D005873 6.3e-71 270.8 146 89.0
Atru.chr1.2995 Acer truncatum HOM05D004884 ORTHO05D005873 1.1e-70 270.0 148 85.8
VMungo0331G0880 Vigna mungo HOM05D004884 ORTHO05D005873 1.4e-70 269.6 146 87.7
CDE04G3015 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 2.4e-70 268.9 146 86.3
Dinv30589 Davidia involucrata HOM05D004884 ORTHO05D005873 2.4e-70 268.9 148 87.2
Gohir.D10G076700 Gossypium hirsutum HOM05D004884 ORTHO05D005873 2.4e-70 268.9 146 88.4
COL.COLO4_12946 Corchorus olitorius HOM05D004884 ORTHO05D005873 3.1e-70 268.5 146 87.7
CsaV3_3G046450 Cucumis sativus L. HOM05D004884 ORTHO05D005873 3.1e-70 268.5 146 87.7
Phvul.010G154800 Phaseolus vulgaris HOM05D004884 ORTHO05D005873 3.1e-70 268.5 146 87.0
ClCG05G016940 Citrullus lanatus HOM05D004884 ORTHO05D005873 4.1e-70 268.1 146 87.0
MELO3C003694.2 Cucumis melo HOM05D004884 ORTHO05D005873 4.1e-70 268.1 146 87.0
Glyma.07G031300 Glycine max HOM05D004884 ORTHO05D005873 4.1e-70 268.1 146 87.0
Glyma.08G211500 Glycine max HOM05D004884 ORTHO05D005873 4.1e-70 268.1 146 87.0
Lalb_Chr04g0262431 Lupinus albus HOM05D004884 ORTHO05D005873 4.1e-70 268.1 146 86.3
MD17G1208900 Malus domestica HOM05D004884 ORTHO05D005873 4.1e-70 268.1 146 86.3
Manes.04G114100 Manihot esculenta HOM05D004884 ORTHO05D005873 4.1e-70 268.1 148 87.2
Lj3g0000080 Lotus japonicus HOM05D004884 ORTHO05D005873 5.3e-70 267.7 146 86.3
Prupe.3G084300 Prunus persica HOM05D004884 ORTHO05D005873 5.3e-70 267.7 146 86.3
CiPaw.08G011500 Carya illinoinensis HOM05D004884 ORTHO05D005873 6.9e-70 267.3 146 87.0
Ciclev10026708m.g Citrus clementina HOM05D004884 ORTHO05D005873 6.9e-70 267.3 146 86.3
Psat5g301920 Pisum sativum HOM05D004884 ORTHO05D005873 6.9e-70 267.3 146 87.0
THA.LOC104808231 Tarenaya hassleriana HOM05D004884 ORTHO05D005873 1.2e-69 266.5 146 86.3
Zm00001eb064920 Zea mays HOM05D004884 ORTHO05D005873 1.5e-69 266.2 146 84.9
QL02p021869 Quercus lobata HOM05D004884 ORTHO05D005873 2.0e-69 265.8 146 86.3
THA.LOC104812503 Tarenaya hassleriana HOM05D004884 ORTHO05D005873 2.0e-69 265.8 146 85.6
Thecc.06G021400 Theobroma cacao HOM05D004884 ORTHO05D005873 2.0e-69 265.8 146 86.3
RcHm_v2.0_Chr2g0135941 Rosa chinensis HOM05D004884 ORTHO05D005873 2.6e-69 265.4 146 84.9
TWI34G0752 Tripterygium wilfordii HOM05D004884 ORTHO05D005873 3.4e-69 265.0 146 82.9
Duzib235G0621 Durio zibethinus HOM05D004884 ORTHO05D005873 4.5e-69 264.6 146 87.0
QL05p029075 Quercus lobata HOM05D004884 ORTHO05D005873 4.5e-69 264.6 146 86.3
Sabra01G0135700 Salix brachista HOM05D004884 ORTHO05D005873 5.9e-69 264.2 146 84.2
Medtr2g103690 Medicago truncatula HOM05D004884 ORTHO05D005873 7.7e-69 263.8 146 85.6
PGR031G3479 Punica granatum HOM05D004884 ORTHO05D005873 7.7e-69 263.8 146 85.6
Gohir.A10G074700 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.0e-68 263.5 146 87.0
Sed0027624 Sechium edule HOM05D004884 ORTHO05D005873 1.0e-68 263.5 146 84.9
Cc04_g04240 Coffea canephora HOM05D004884 ORTHO05D005873 1.3e-68 263.1 146 83.6
Hma1.2p1_0515F.1_g170110 Hydrangea macrophylla HOM05D004884 ORTHO05D005873 1.3e-68 263.1 148 83.1
Oeu045160.1 Olea europaea HOM05D004884 ORTHO05D005873 1.7e-68 262.7 146 84.2
Potri.001G193100 Populus trichocarpa HOM05D004884 ORTHO05D005873 1.7e-68 262.7 146 83.6
MSTRG.9432 Avicennia marina HOM05D004884 ORTHO05D005873 2.2e-68 262.3 146 84.2
Cfa013154 Carpinus fangiana HOM05D004884 ORTHO05D005873 2.9e-68 261.9 146 84.2
Eucgr.F02527 Eucalyptus grandis HOM05D004884 ORTHO05D005873 2.9e-68 261.9 146 84.2
Migut.D01065 Erythranthe guttata HOM05D004884 ORTHO05D005873 5.0e-68 261.2 146 83.6
Lalb_Chr22g0350881 Lupinus albus HOM05D004884 ORTHO05D005873 5.0e-68 261.2 146 84.9
Oeu052257.1 Olea europaea HOM05D004884 ORTHO05D005873 6.5e-68 260.8 146 83.6
SalBow3G1656 Salvia bowleyana HOM05D004884 ORTHO05D005873 6.5e-68 260.8 146 82.9
CSS0003587 Camellia sinensis var. sinensis HOM05D004884 ORTHO05D005873 8.5e-68 260.4 148 83.1
AL1G27470 Arabidopsis lyrata HOM05D004884 ORTHO05D005873 1.1e-67 260.0 148 81.8
AT1G15370 Arabidopsis thaliana HOM05D004884 ORTHO05D005873 1.1e-67 260.0 148 81.8
Lsat_1_v5_gn_1_2440 Lactuca sativa HOM05D004884 ORTHO05D005873 1.1e-67 260.0 146 82.9
ECA240G3509 Erigeron canadensis HOM05D004884 ORTHO05D005873 1.4e-67 259.6 146 82.9
FvH4_6g29940 Fragaria vesca HOM05D004884 ORTHO05D005873 1.4e-67 259.6 146 83.6
FAN14G1538 Fragaria x ananassa HOM05D004884 ORTHO05D005873 1.4e-67 259.6 146 83.6
CAN.G407.94 Capsicum annuum HOM05D004884 ORTHO05D005873 1.9e-67 259.2 146 82.9
HanXRQChr02g0046821 Helianthus annuus HOM05D004884 ORTHO05D005873 1.9e-67 259.2 146 82.9
vmacro20098 Vaccinium macrocarpon HOM05D004884 ORTHO05D005873 2.5e-67 258.8 148 79.7
CARHR015900 Cardamine hirsuta HOM05D004884 ORTHO05D005873 3.2e-67 258.5 148 81.1
Sopen03g035510 Solanum pennellii HOM05D004884 ORTHO05D005873 3.2e-67 258.5 146 82.9
SGA_v2.0_scaffold117G32369 Striga asiatica HOM05D004884 ORTHO05D005873 3.2e-67 258.5 146 82.2
Actinidia18100 Actinidia chinensis HOM05D004884 ORTHO05D005873 4.2e-67 258.1 148 81.1
AUR62012381 Chenopodium quinoa HOM05D004884 ORTHO05D005873 4.2e-67 258.1 146 82.2
FAN09G2574 Fragaria x ananassa HOM05D004884 ORTHO05D005873 4.2e-67 258.1 146 82.9
Solyc06g068080.4 Solanum lycopersicum HOM05D004884 ORTHO05D005873 5.5e-67 257.7 146 82.2
Sopen06g025360 Solanum pennellii HOM05D004884 ORTHO05D005873 5.5e-67 257.7 146 82.2
PGSC0003DMG400028511 Solanum tuberosum HOM05D004884 ORTHO05D005873 5.5e-67 257.7 146 82.2
Solyc03g116600.3 Solanum lycopersicum HOM05D004884 ORTHO05D005873 7.2e-67 257.3 146 82.2
ECA247G2927 Erigeron canadensis HOM05D001354 ORTHO05D002582 9.4e-67 256.9 146 82.2
FAN02G1988 Fragaria x ananassa HOM05D004884 ORTHO05D005873 9.4e-67 256.9 146 82.9
BcaC07g41506 Brassica carinata HOM05D004884 ORTHO05D005873 1.2e-66 256.5 146 80.8
BolC8t52049H Brassica oleracea HOM05D004884 ORTHO05D005873 1.2e-66 256.5 146 80.8
Carub.0001s1514 Capsella rubella HOM05D004884 ORTHO05D005873 1.2e-66 256.5 146 80.8
PGSC0003DMG400000635 Solanum tuberosum HOM05D004884 ORTHO05D005873 1.2e-66 256.5 146 82.2
TWI75G0638 Tripterygium wilfordii HOM05D004884 ORTHO05D005873 2.1e-66 255.8 146 80.8
unitig_747.g21296 Utricularia gibba HOM05D004884 ORTHO05D005873 2.7e-66 255.4 146 81.5
Rhsim10G0061400 Rhododendron simsii HOM05D004884 ORTHO05D005873 3.6e-66 255.0 148 78.4
Sed0022166 Sechium edule HOM05D004884 ORTHO05D005873 3.6e-66 255.0 140 86.4
Gohir.D06G099800 Gossypium hirsutum HOM05D004884 ORTHO05D005873 1.4e-65 253.1 150 79.3
Sp1g13700 Schrenkiella parvula HOM05D004884 ORTHO05D005873 1.4e-65 253.1 146 80.1
BcaB03g14545 Brassica carinata HOM05D004884 ORTHO05D005873 1.8e-65 252.7 146 80.1
BcaC05g25475 Brassica carinata HOM05D004884 ORTHO05D005873 1.8e-65 252.7 146 80.1
BcaC05g25490 Brassica carinata HOM05D004884 ORTHO05D005873 1.8e-65 252.7 146 80.1
A06p11400 Brassica napus HOM05D004884 ORTHO05D005873 1.8e-65 252.7 146 80.1
A09p61460 Brassica napus HOM05D004884 ORTHO05D005873 1.8e-65 252.7 146 80.1
C05p13510 Brassica napus HOM05D004884 ORTHO05D005873 1.8e-65 252.7 146 80.1
C08p45030 Brassica napus HOM05D004884 ORTHO05D005873 1.8e-65 252.7 146 80.1
BolC5t30088H Brassica oleracea HOM05D004884 ORTHO05D005873 1.8e-65 252.7 146 80.1
BraA06t24317Z Brassica rapa HOM05D004884 ORTHO05D005873 1.8e-65 252.7 146 80.1
BraA09t41517Z Brassica rapa HOM05D004884 ORTHO05D005873 1.8e-65 252.7 146 80.1
Thhalv10009024m.g Eutrema salsugineum HOM05D004884 ORTHO05D005873 1.8e-65 252.7 146 80.1
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 2.3e-65 252.3 135 87.4
Gorai.010G114700 Gossypium raimondii HOM05D004884 ORTHO05D005873 8.8e-65 250.4 150 78.0
FAN05G0038 Fragaria x ananassa HOM05D004884 ORTHO05D005873 1.1e-64 250.0 166 74.1
Peaxi162Scf00207g00728 Petunia axillaris HOM05D004884 ORTHO05D005873 2.0e-64 249.2 146 80.1
EL10Ac2g04219 Beta vulgaris HOM05D004884 ORTHO05D005873 7.4e-64 247.3 156 75.0
Thhalv10019295m.g Eutrema salsugineum HOM05D004884 ORTHO05D005873 9.7e-64 246.9 146 78.1
Solyc11g008330.3 Solanum lycopersicum HOM05D004884 ORTHO05D005873 1.8e-62 242.7 148 75.7
Nitab4.5_0013106g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 1.2e-61 240.0 138 81.2
Glyma.15G008700 Glycine max HOM05D004884 ORTHO05D005873 2.0e-61 239.2 128 87.5
SMO143G0054 Selaginella moellendorffii HOM05D004884 ORTHO05D005873 7.7e-61 237.3 146 75.3
Aa31LG4G430 Aethionema arabicum HOM05D004884 ORTHO05D005873 1.7e-60 236.1 135 81.5
AUR62031521 Chenopodium quinoa HOM05D004884 ORTHO05D005873 2.9e-60 235.3 196 61.2
arahy.Tifrunner.gnm1.ann1.Q10AU9 Arachis hypogaea HOM05D004884 ORTHO05D005873 5.0e-60 234.6 131 86.3
arahy.Tifrunner.gnm1.ann1.W4DERE Arachis hypogaea HOM05D004884 ORTHO05D005873 5.0e-60 234.6 131 86.3
Gorai.011G082800 Gossypium raimondii HOM05D004884 ORTHO05D005873 2.7e-58 228.8 124 87.9
Sc23g0006790 Simmondsia chinensis HOM05D004884 ORTHO05D005873 4.7e-58 228.0 124 85.5
AUR62012868 Chenopodium quinoa HOM05D004884 ORTHO05D005873 8.0e-58 227.3 146 71.9
EL10Ac9g22900 Beta vulgaris HOM05D004884 ORTHO05D005873 2.3e-57 225.7 148 70.3
CSS0011163 Camellia sinensis var. sinensis HOM05D004884 ORTHO05D005873 2.3e-57 225.7 131 79.4
Pp3c18_11860 Physcomitrium patens HOM05D004884 ORTHO05D005873 1.5e-56 223.0 146 68.5
Sabra06G0198100 Salix brachista HOM05D004884 ORTHO05D005873 1.5e-56 223.0 124 84.7
Dinv38109 Davidia involucrata HOM05D000250 ORTHO05D002477 4.4e-56 221.5 124 83.9
Nitab4.5_0001764g0110 Nicotiana tabacum HOM05D004884 ORTHO05D005873 2.8e-55 218.8 123 82.9
Potri.006G253700 Populus trichocarpa HOM05D004884 ORTHO05D005873 3.7e-55 218.4 148 73.0
SalBow6G6988 Salvia bowleyana HOM05D004884 ORTHO05D005873 8.2e-55 217.2 122 83.6
Actinidia36285 Actinidia chinensis HOM05D004884 ORTHO05D005873 5.3e-54 214.5 124 79.8
AagrBONN_evm.TU.Sc2ySwM_368.2705 Anthoceros agrestis HOM05D004884 ORTHO05D005873 4.5e-53 211.5 145 66.9
Peaxi162Scf00145g01210 Petunia axillaris HOM05D004884 ORTHO05D005873 5.0e-52 208.0 130 73.1
Mapoly0005s0226 Marchantia polymorpha HOM05D004884 ORTHO05D005873 8.5e-52 207.2 146 61.6
CDE06G1547 Ceratophyllum demersum HOM05D004884 ORTHO05D005873 1.5e-51 206.5 114 85.1
Peaxi162Scf00332g00767 Petunia axillaris HOM05D004884 ORTHO05D005873 2.5e-51 205.7 128 78.1
Nitab4.5_0006187g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 9.4e-51 203.8 130 73.8
CAN.G321.60 Capsicum annuum HOM05D004884 ORTHO05D005873 1.1e-46 190.3 119 73.1
Gorai.001G184900 Gossypium raimondii HOM05D004884 ORTHO05D005873 1.5e-40 169.9 146 63.0
QL05p029040 Quercus lobata HOM05D004884 ORTHO05D005873 1.5e-40 169.9 113 73.5
Sopen11g004140 Solanum pennellii HOM05D004884 ORTHO05D005873 4.4e-40 168.3 148 58.8
Gohir.D07G161600 Gossypium hirsutum HOM05D004884 ORTHO05D005873 2.2e-39 166.0 146 62.3
BcaC07g41508 Brassica carinata HOM05D004884 ORTHO05D005873 6.3e-39 164.5 119 68.9
CBR_g8585 Chara braunii HOM05D004884 ORTHO05D005873 7.0e-38 161.0 143 53.8
Haze_21525 Corylus avellana HOM05D004884 ORTHO05D005873 8.6e-36 154.1 174 51.7
Nitab4.5_0005235g0010 Nicotiana tabacum HOM05D004884 ORTHO05D005873 1.6e-34 149.8 119 60.5
Oeu024660.1 Olea europaea HOM05D004884 ORTHO05D005873 6.8e-33 144.4 82 82.9
Gohir.D13G076450 Gossypium hirsutum HOM05D004884 ORTHO05D005873 8.9e-33 144.1 82 84.1
Gorai.013G087100 Gossypium raimondii HOM05D004884 ORTHO05D005873 1.7e-31 139.8 87 80.5
Nn8g39461 Nelumbo nucifera HOM05D004884 ORTHO05D005873 1.7e-23 113.2 65 83.1
Gohir.A06G098210 Gossypium hirsutum HOM05D004884 ORTHO05D005873 9.2e-22 107.5 63 79.4
Nitab4.5_0001450g0150 Nicotiana tabacum HOM05D004884 ORTHO05D005873 9.2e-22 107.5 86 60.5
Hund04518 Selenicereus undatus HOM05D004884 ORTHO05D005873 9.2e-22 107.5 60 85.0
Nitab4.5_0000620g0040 Nicotiana tabacum HOM05D004884 ORTHO05D005873 6.0e-21 104.8 65 78.5
DCAR_015322 Daucus carota HOM05D004884 ORTHO05D005873 6.6e-20 101.3 58 82.8
Gohir.A13G076901 Gossypium hirsutum HOM05D004884 ORTHO05D005873 8.6e-20 100.9 128 49.2
Gohir.D01G156500 Gossypium hirsutum HOM05D004884 ORTHO05D005873 3.1e-17 92.4 50 86.0
MCO11G456 Micromonas commoda HOM05D004884 ORTHO05D005873 5.2e-17 91.7 152 36.2
Cre12.g561200 Chlamydomonas reinhardtii HOM05D004884 ORTHO05D005873 8.9e-17 90.9 136 35.3
TPR.G29435 Trifolium pratense HOM05D004884 ORTHO05D005873 1.2e-16 90.5 46 89.1
PRCOL_00001860 Prasinoderma coloniale HOM05D004884 ORTHO05D005873 1.3e-15 87.0 151 34.4
CAN.G185.10 Capsicum annuum HOM05D004884 ORTHO05D005873 2.6e-08 62.8 64 51.6
Manes.04G141100 Manihot esculenta HOM05D002096 ORTHO05D002203 3.2e-06 55.8 135 28.1


User provided reference genes

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