Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G0382 Trochodendron aralioides HOM05D004642 ORTHO05D005466 1.5e-131 473.0 258 100.0
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 9.9e-64 247.7 276 56.5
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 1.0e-55 221.1 271 52.0
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 2.9e-55 219.5 279 49.5
Atru.chr1.3266 Acer truncatum HOM05D004642 ORTHO05D005466 1.6e-50 203.8 281 48.4
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 4.1e-49 199.1 279 48.0
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 2.0e-48 196.8 286 46.9
Aqoxy7G01787 Aquilegia oxysepala HOM05D004642 ORTHO05D005466 1.7e-47 193.7 225 54.2
Gorai.009G133100 Gossypium raimondii HOM05D004642 ORTHO05D005466 5.5e-46 188.7 284 45.8
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 5.5e-46 188.7 214 56.1
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 5.5e-46 188.7 273 46.2
Gohir.D05G129000 Gossypium hirsutum HOM05D004642 ORTHO05D005466 7.2e-46 188.3 284 45.8
Nitab4.5_0000671g0060 Nicotiana tabacum HOM05D004642 ORTHO05D005466 2.7e-45 186.4 283 47.0
Gohir.A05G129515 Gossypium hirsutum HOM05D004642 ORTHO05D005466 7.9e-45 184.9 289 45.3
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 2.3e-44 183.3 281 46.3
Oeu033484.1 Olea europaea HOM05D004642 ORTHO05D005466 7.4e-43 178.3 249 47.4
Actinidia24760 Actinidia chinensis HOM05D004642 ORTHO05D005466 2.2e-42 176.8 275 45.8
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 3.7e-42 176.0 280 44.3
PGR102G3321 Punica granatum HOM05D004642 ORTHO05D005466 3.7e-42 176.0 252 46.8
MELO3C024228.2 Cucumis melo HOM05D004642 ORTHO05D005466 4.8e-42 175.6 285 42.8
CsaV3_7G033140 Cucumis sativus L. HOM05D004642 ORTHO05D005466 4.8e-42 175.6 285 42.8
ClCG09G002170 Citrullus lanatus HOM05D004642 ORTHO05D005466 1.1e-41 174.5 250 45.2
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 1.4e-41 174.1 284 43.0
PGSC0003DMG400002564 Solanum tuberosum HOM05D004642 ORTHO05D005466 7.7e-40 168.3 235 47.2
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 1.7e-39 167.2 219 52.5
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 2.2e-39 166.8 173 59.0
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 2.2e-39 166.8 268 44.4
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 1.1e-38 164.5 281 43.8
Solyc03g120230.3 Solanum lycopersicum HOM05D004642 ORTHO05D005466 3.2e-38 162.9 275 44.4
Lj3g0008789 Lotus japonicus HOM05D004642 ORTHO05D005466 7.2e-38 161.8 262 45.4
Gorai.006G098800 Gossypium raimondii HOM05D004642 ORTHO05D005466 9.4e-38 161.4 317 38.8
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 1.2e-37 161.0 320 39.7
Sopen03g039110 Solanum pennellii HOM05D004642 ORTHO05D005466 1.6e-37 160.6 275 44.0
vmacro16950 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 2.7e-37 159.8 267 43.4
Gohir.A09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 3.6e-37 159.5 312 37.8
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 4.6e-37 159.1 181 54.7
SGA_v2.0_scaffold4G01996 Striga asiatica HOM05D004642 ORTHO05D005466 7.9e-37 158.3 262 41.2
Lalb_Chr04g0262651 Lupinus albus HOM05D004642 ORTHO05D005466 1.8e-36 157.1 278 40.6
GSVIVG01017115001 Vitis vinifera HOM05D004642 ORTHO05D005466 2.3e-36 156.8 213 47.9
Lsat_1_v5_gn_4_103580 Lactuca sativa HOM05D004642 ORTHO05D005466 3.0e-36 156.4 276 41.7
TWI75G1656 Tripterygium wilfordii HOM05D004642 ORTHO05D005466 3.0e-36 156.4 251 44.2
Gohir.D09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 8.8e-36 154.8 312 38.1
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 8.8e-36 154.8 261 41.0
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 1.1e-35 154.5 248 42.3
Duzib192G0922 Durio zibethinus HOM05D004642 ORTHO05D005466 2.0e-35 153.7 240 46.2
Hma1.2p1_0323F.1_g125200 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 1.3e-34 151.0 174 53.4
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 1.7e-34 150.6 231 45.9
CiPaw.01G239700 Carya illinoinensis HOM05D004642 ORTHO05D005466 1.2e-32 144.4 191 50.3
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 1.2e-32 144.4 275 41.5
SalBow2G2616 Salvia bowleyana HOM05D004642 ORTHO05D005466 2.0e-32 143.7 205 44.4
FAN09G1651 Fragaria x ananassa HOM05D004642 ORTHO05D005466 5.9e-32 142.1 239 43.1
FvH4_6g31081 Fragaria vesca HOM05D004642 ORTHO05D005466 7.7e-32 141.7 239 42.7
Glyma.12G087100 Glycine max HOM05D004642 ORTHO05D005466 1.0e-31 141.4 252 42.9
Peaxi162Scf00015g00335 Petunia axillaris HOM05D004642 ORTHO05D005466 1.3e-31 141.0 188 47.9
Actinidia08974 Actinidia chinensis HOM05D004642 ORTHO05D005466 2.9e-31 139.8 286 38.5
Eucgr.F03012 Eucalyptus grandis HOM05D004642 ORTHO05D005466 2.9e-31 139.8 177 51.4
FAN14G2337 Fragaria x ananassa HOM05D004642 ORTHO05D005466 3.8e-31 139.4 239 42.7
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 6.5e-31 138.7 274 38.7
FAN05G5776 Fragaria x ananassa HOM05D004642 ORTHO05D005466 8.5e-31 138.3 235 43.4
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 1.9e-30 137.1 236 43.2
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 1.9e-30 137.1 362 35.1
Lalb_Chr01g0012651 Lupinus albus HOM05D004642 ORTHO05D005466 2.5e-30 136.7 272 39.0
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 3.2e-30 136.3 199 47.2
SalBow2G0306 Salvia bowleyana HOM05D004642 ORTHO05D005466 3.2e-30 136.3 226 38.9
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 5.5e-30 135.6 251 41.8
THA.LOC104817998 Tarenaya hassleriana HOM05D004642 ORTHO05D005466 5.5e-30 135.6 238 42.4
COL.COLO4_30362 Corchorus olitorius HOM05D004642 ORTHO05D005466 9.4e-30 134.8 272 38.2
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 1.2e-29 134.4 235 41.3
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 1.6e-29 134.0 267 39.0
Manes.11G047800 Manihot esculenta HOM05D004642 ORTHO05D005466 1.6e-29 134.0 206 46.6
BcaC01g03843 Brassica carinata HOM05D004642 ORTHO05D005466 2.7e-29 133.3 230 42.6
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 2.7e-29 133.3 230 42.6
BolC3t17082H Brassica oleracea HOM05D004642 ORTHO05D005466 2.7e-29 133.3 230 42.6
HanXRQChr09g0275271 Helianthus annuus HOM05D004642 ORTHO05D005466 2.7e-29 133.3 218 41.3
BraA03t13110Z Brassica rapa HOM05D004642 ORTHO05D005466 3.6e-29 132.9 258 39.5
unitig_744.g24335 Utricularia gibba HOM05D004642 ORTHO05D005466 3.6e-29 132.9 224 39.3
Ca_19383_v3 Cicer arietinum L. HOM05D004642 ORTHO05D005466 4.7e-29 132.5 188 44.1
Medtr4g054960 Medicago truncatula HOM05D004642 ORTHO05D005466 7.9e-29 131.7 233 42.1
A03p39630 Brassica napus HOM05D004642 ORTHO05D005466 1.8e-28 130.6 230 41.7
Sp3g14350 Schrenkiella parvula HOM05D004642 ORTHO05D005466 6.7e-28 128.6 216 42.6
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 8.8e-28 128.3 214 42.1
Sed0016127 Sechium edule HOM05D004642 ORTHO05D005466 1.5e-27 127.5 169 48.5
RcHm_v2.0_Chr2g0137781 Rosa chinensis HOM05D004642 ORTHO05D005466 3.3e-27 126.3 192 44.8
MD09G1213500 Malus domestica HOM05D004642 ORTHO05D005466 4.4e-27 125.9 163 50.9
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 7.4e-27 125.2 199 43.7
FAN02G1410 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.3e-26 124.4 261 39.1
Ah.01g021290 Amaranthus hybridus HOM05D004642 ORTHO05D005466 2.2e-26 123.6 254 36.2
EL10Ac9g21996 Beta vulgaris HOM05D004642 ORTHO05D005466 3.7e-26 122.9 209 40.2
Psat7g189080 Pisum sativum HOM05D004642 ORTHO05D005466 6.3e-26 122.1 177 45.2
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 8.2e-26 121.7 284 36.3
arahy.Tifrunner.gnm1.ann1.I53961 Arachis hypogaea HOM05D004642 ORTHO05D005466 1.8e-25 120.6 213 42.7
BcaB06g25698 Brassica carinata HOM05D004642 ORTHO05D005466 5.3e-25 119.0 191 41.9
arahy.Tifrunner.gnm1.ann1.D5EQ93 Arachis hypogaea HOM05D004642 ORTHO05D005466 7.0e-25 118.6 213 41.3
CANSAT56G1090 Cannabis sativa HOM05D004642 ORTHO05D005466 1.6e-24 117.5 170 45.3
Dinv38051 Davidia involucrata HOM05D004642 ORTHO05D005466 2.6e-24 116.7 125 57.6
C05p50450 Brassica napus HOM05D004642 ORTHO05D005466 7.7e-24 115.2 192 43.2
ATR0037G055 Amborella trichopoda HOM05D004642 ORTHO05D005466 1.0e-23 114.8 208 38.9
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 1.0e-23 114.8 240 32.9
TAR624G0442 Trochodendron aralioides HOM05D004642 ORTHO05D005466 1.3e-23 114.4 115 61.7
AUR62016441 Chenopodium quinoa HOM05D004642 ORTHO05D005466 3.8e-23 112.8 216 39.4
CAN.G438.64 Capsicum annuum HOM05D004642 ORTHO05D005466 5.0e-23 112.5 202 42.1
BraA05t22169Z Brassica rapa HOM05D004642 ORTHO05D005466 8.5e-23 111.7 194 41.8
CDE07G1358 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 8.5e-23 111.7 164 43.9
Sed0016916 Sechium edule HOM05D004642 ORTHO05D005466 1.1e-22 111.3 234 36.3
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 1.5e-22 110.9 192 41.7
Phvul.011G092000 Phaseolus vulgaris HOM05D004642 ORTHO05D005466 1.5e-22 110.9 176 41.5
AUR62011627 Chenopodium quinoa HOM05D004642 ORTHO05D005466 7.2e-22 108.6 224 37.1
Lj5A61G44 Lonicera japonica HOM05D004642 ORTHO05D005466 7.2e-22 108.6 238 36.6
Sc21g0005100 Simmondsia chinensis HOM05D004642 ORTHO05D005466 1.2e-21 107.8 172 41.3
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 3.6e-21 106.3 177 43.5
HanXRQChr16g0500971 Helianthus annuus HOM05D004642 ORTHO05D005466 3.6e-21 106.3 263 36.1
MD09G1212900 Malus domestica HOM05D004642 ORTHO05D005466 3.6e-21 106.3 154 46.8
BolC5t33791H Brassica oleracea HOM05D004642 ORTHO05D005466 4.7e-21 105.9 178 42.1
VMungo1127G1134 Vigna mungo HOM05D004642 ORTHO05D005466 4.7e-21 105.9 277 36.5
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 6.1e-21 105.5 267 35.2
arahy.Tifrunner.gnm1.ann1.CA04QB Arachis hypogaea HOM05D004642 ORTHO05D005466 1.4e-20 104.4 190 37.9
arahy.Tifrunner.gnm1.ann1.Z6VQ0W Arachis hypogaea HOM05D004642 ORTHO05D005466 1.4e-20 104.4 190 37.9
MSTRG.9454 Avicennia marina HOM05D004642 ORTHO05D005466 1.4e-20 104.4 183 37.2
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 5.2e-20 102.4 269 35.7
Hund00614 Selenicereus undatus HOM05D004642 ORTHO05D005466 5.2e-20 102.4 222 36.5
Carub.0003s1573 Capsella rubella HOM05D004642 ORTHO05D005466 6.7e-20 102.1 217 38.2
CDE06G0246 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 8.8e-20 101.7 164 39.6
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 8.8e-20 101.7 125 49.6
SGA_v2.0_scaffold37G14818 Striga asiatica HOM05D004642 ORTHO05D005466 1.5e-19 100.9 202 37.1
unitig_578.g16688 Utricularia gibba HOM05D004642 ORTHO05D005466 3.3e-19 99.8 301 28.6
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 5.7e-19 99.0 210 39.0
BcaB04g20887 Brassica carinata HOM05D004642 ORTHO05D005466 1.3e-18 97.8 277 34.7
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 8.2e-18 95.1 263 31.6
C01p48370 Brassica napus HOM05D004642 ORTHO05D005466 9.1e-17 91.7 269 35.3
BolC1t04795H Brassica oleracea HOM05D004642 ORTHO05D005466 2.7e-16 90.1 267 34.8
CSS0030593 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 2.7e-16 90.1 115 52.2
Os05g0180400 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 1.1e-14 84.7 169 34.9
Os01g0180300 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 1.9e-14 84.0 180 35.6
HPP92_019980 Vanilla planifolia HOM05D004642 ORTHO05D005466 3.2e-14 83.2 181 34.8
CDE07G0399 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 7.2e-14 82.0 165 38.8
Hund06610 Selenicereus undatus HOM05D004642 ORTHO05D005466 6.1e-13 79.0 182 37.4
SEGI_16798 Sequoiadendron giganteum HOM05D004642 ORTHO05D005466 2.3e-12 77.0 179 31.8
Zm00001eb122200 Zea mays HOM05D004642 ORTHO05D005466 4.4e-11 72.8 125 38.4
Glyma.11G187500 Glycine max HOM05D004642 ORTHO05D005466 1.6e-08 64.3 260 29.6
CSS0005738 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 1.5e-06 57.8 52 59.6


User provided reference genes

Program Settings