Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G0304 Trochodendron aralioides HOM05D005867 ORTHO05D007273 1.9e-104 382.5 186 100.0
TAR633G2552 Trochodendron aralioides HOM05D005867 ORTHO05D007273 9.9e-98 360.1 185 93.5
Gohir.A05G068300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 2.4e-96 355.5 186 88.7
Gorai.009G072300 Gossypium raimondii HOM05D005867 ORTHO05D007273 4.2e-96 354.8 186 88.2
Duzib168G0296 Durio zibethinus HOM05D005867 ORTHO05D007273 7.1e-96 354.0 186 89.2
Ciclev10016610m.g Citrus clementina HOM05D005867 ORTHO05D007273 2.1e-95 352.4 186 89.2
Gohir.D05G071300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 2.7e-95 352.1 186 88.2
Thecc.09G227900 Theobroma cacao HOM05D005867 ORTHO05D007273 3.5e-95 351.7 186 87.6
EL10Ac4g10299 Beta vulgaris HOM05D005867 ORTHO05D007273 3.0e-94 348.6 186 88.2
Cpa.g.sc84.80 Carica papaya HOM05D005867 ORTHO05D007273 3.0e-94 348.6 186 86.6
Nn2g15416 Nelumbo nucifera HOM05D005867 ORTHO05D007273 6.6e-94 347.4 186 88.7
COL.COLO4_24845 Corchorus olitorius HOM05D005867 ORTHO05D007273 8.7e-94 347.1 186 87.1
Sabra01G0013100 Salix brachista HOM05D005867 ORTHO05D007273 1.1e-93 346.7 186 86.6
Atru.chr3.2589 Acer truncatum HOM05D005867 ORTHO05D007273 2.5e-93 345.5 186 86.0
Dinv36283 Davidia involucrata HOM05D005867 ORTHO05D007273 2.5e-93 345.5 186 87.1
Ah.04g161870 Amaranthus hybridus HOM05D005867 ORTHO05D007273 3.3e-93 345.1 186 86.0
Cfa009733 Carpinus fangiana HOM05D005867 ORTHO05D007273 3.3e-93 345.1 186 87.1
Ah.06g193630 Amaranthus hybridus HOM05D005867 ORTHO05D007273 7.3e-93 344.0 186 86.0
AUR62000096 Chenopodium quinoa HOM05D005867 ORTHO05D007273 9.6e-93 343.6 186 86.0
AUR62019269 Chenopodium quinoa HOM05D005867 ORTHO05D007273 9.6e-93 343.6 186 86.0
GSVIVG01025306001 Vitis vinifera HOM05D005867 ORTHO05D007273 9.6e-93 343.6 186 87.1
VMungo1080G0295 Vigna mungo HOM05D005867 ORTHO05D007273 2.8e-92 342.0 186 84.9
ClCG03G013300 Citrullus lanatus HOM05D005867 ORTHO05D007273 4.8e-92 341.3 185 84.9
Rhsim13G0224100 Rhododendron simsii HOM05D005867 ORTHO05D007273 6.2e-92 340.9 186 84.4
Prupe.6G023200 Prunus persica HOM05D005867 ORTHO05D007273 8.1e-92 340.5 184 84.8
CiPaw.13G163600 Carya illinoinensis HOM05D005867 ORTHO05D007273 1.1e-91 340.1 186 86.6
MD03G1024000 Malus domestica HOM05D005867 ORTHO05D007273 1.1e-91 340.1 186 85.5
Potri.001G018500 Populus trichocarpa HOM05D005867 ORTHO05D007273 1.1e-91 340.1 186 85.5
CANSAT54G1708 Cannabis sativa HOM05D005867 ORTHO05D007273 1.4e-91 339.7 186 85.5
THA.LOC104804975 Tarenaya hassleriana HOM05D005867 ORTHO05D007273 1.4e-91 339.7 185 84.3
Phvul.L010243 Phaseolus vulgaris HOM05D005867 ORTHO05D007273 2.4e-91 339.0 186 84.4
MELO3C015200.2 Cucumis melo HOM05D005867 ORTHO05D007273 3.1e-91 338.6 186 84.4
Glyma.15G033100 Glycine max HOM05D005867 ORTHO05D007273 3.1e-91 338.6 186 84.4
CsaV3_1G042730 Cucumis sativus L. HOM05D005867 ORTHO05D007273 4.0e-91 338.2 186 84.4
PGR119G1510 Punica granatum HOM05D005867 ORTHO05D007273 6.9e-91 337.4 186 85.5
Eucgr.J00791 Eucalyptus grandis HOM05D005867 ORTHO05D007273 9.0e-91 337.0 186 83.9
MD11G1028900 Malus domestica HOM05D005867 ORTHO05D007273 9.0e-91 337.0 186 84.9
Sed0004394 Sechium edule HOM05D005867 ORTHO05D007273 9.0e-91 337.0 186 83.3
Actinidia16309 Actinidia chinensis HOM05D005867 ORTHO05D007273 2.6e-90 335.5 186 83.3
Cc01_g01980 Coffea canephora HOM05D005867 ORTHO05D007273 3.4e-90 335.1 186 82.8
MSTRG.21396 Avicennia marina HOM05D005867 ORTHO05D007273 4.5e-90 334.7 186 83.3
SHI29727 Sapria himalayana HOM05D005867 ORTHO05D007273 7.6e-90 334.0 186 84.4
Aa31LG3G14590 Aethionema arabicum HOM05D005867 ORTHO05D007273 1.7e-89 332.8 186 82.3
Nitab4.5_0002766g0030 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.7e-89 332.8 186 82.8
MSTRG.17581 Avicennia marina HOM05D005867 ORTHO05D007273 2.2e-89 332.4 186 82.8
CSS0048722 Camellia sinensis var. sinensis HOM05D005867 ORTHO05D007273 2.2e-89 332.4 182 83.5
ECA238G1591 Erigeron canadensis HOM05D005867 ORTHO05D007273 2.2e-89 332.4 181 83.4
QL01p005337 Quercus lobata HOM05D005867 ORTHO05D007273 2.2e-89 332.4 185 83.8
RcHm_v2.0_Chr5g0077191 Rosa chinensis HOM05D005867 ORTHO05D007273 2.2e-89 332.4 184 84.2
Oeu035742.1 Olea europaea HOM05D005867 ORTHO05D007273 2.9e-89 332.0 185 82.7
Sc06g0004490 Simmondsia chinensis HOM05D005867 ORTHO05D007273 2.9e-89 332.0 186 84.4
HanXRQChr14g0453051 Helianthus annuus HOM05D005867 ORTHO05D007273 6.4e-89 330.9 188 81.9
SalBow4G1382 Salvia bowleyana HOM05D005867 ORTHO05D007273 6.4e-89 330.9 184 83.7
TWI60G1455 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 6.4e-89 330.9 186 82.3
DCAR_002056 Daucus carota HOM05D005867 ORTHO05D007273 1.4e-88 329.7 186 81.2
Nitab4.5_0008868g0020 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.4e-88 329.7 186 82.8
AL6G23670 Arabidopsis lyrata HOM05D005867 ORTHO05D007273 1.9e-88 329.3 183 83.1
Thhalv10014788m.g Eutrema salsugineum HOM05D005867 ORTHO05D007273 1.9e-88 329.3 183 83.1
Manes.06G166900 Manihot esculenta HOM05D005867 ORTHO05D007273 1.9e-88 329.3 186 82.8
SalBow4G0034 Salvia bowleyana HOM05D005867 ORTHO05D007273 1.9e-88 329.3 184 83.2
Sp6g30910 Schrenkiella parvula HOM05D005867 ORTHO05D007273 1.9e-88 329.3 183 83.6
Carub.0006s1124 Capsella rubella HOM05D005867 ORTHO05D007273 2.4e-88 328.9 183 83.1
Peaxi162Scf00029g00326 Petunia axillaris HOM05D005867 ORTHO05D007273 2.4e-88 328.9 184 82.1
CAN.G575.64 Capsicum annuum HOM05D005867 ORTHO05D007273 3.2e-88 328.6 184 82.6
Migut.N02304 Erythranthe guttata HOM05D005867 ORTHO05D007273 3.2e-88 328.6 186 82.3
FAN25G0812 Fragaria x ananassa HOM05D005867 ORTHO05D007273 4.2e-88 328.2 184 82.6
Nitab4.5_0001925g0100 Nicotiana tabacum HOM05D005867 ORTHO05D007273 4.2e-88 328.2 181 83.4
CARHR200400 Cardamine hirsuta HOM05D005867 ORTHO05D007273 5.4e-88 327.8 183 82.0
Haze_23087 Corylus avellana HOM05D005867 ORTHO05D007273 7.1e-88 327.4 183 84.2
FvH4_3g43090 Fragaria vesca HOM05D005867 ORTHO05D007273 7.1e-88 327.4 184 82.1
FAN11G1123 Fragaria x ananassa HOM05D005867 ORTHO05D007273 7.1e-88 327.4 184 82.1
HanXRQChr02g0036871 Helianthus annuus HOM05D005867 ORTHO05D007273 7.1e-88 327.4 188 81.4
BcaC04g19155 Brassica carinata HOM05D002203 ORTHO05D007273 9.3e-88 327.0 183 81.4
Dinv08036 Davidia involucrata HOM05D005867 ORTHO05D007273 9.3e-88 327.0 178 85.4
PGSC0003DMG400013588 Solanum tuberosum HOM05D005867 ORTHO05D007273 9.3e-88 327.0 184 81.5
AT5G13070 Arabidopsis thaliana HOM05D005867 ORTHO05D007273 1.2e-87 326.6 183 82.0
A02p01670 Brassica napus HOM05D005867 ORTHO05D007273 1.2e-87 326.6 183 81.4
BolC2t06533H Brassica oleracea HOM05D005867 ORTHO05D007273 1.2e-87 326.6 183 81.4
BraA02t05146Z Brassica rapa HOM05D005867 ORTHO05D007273 1.2e-87 326.6 183 81.4
Migut.D00576 Erythranthe guttata HOM05D005867 ORTHO05D007273 1.2e-87 326.6 182 82.4
Solyc12g100050.2 Solanum lycopersicum HOM05D005867 ORTHO05D007273 1.2e-87 326.6 184 82.1
SGA_v2.0_scaffold8G04610 Striga asiatica HOM05D005867 ORTHO05D007273 1.2e-87 326.6 186 80.6
Lsat_1_v5_gn_2_100781 Lactuca sativa HOM05D005867 ORTHO05D007273 1.6e-87 326.2 188 81.4
BcaNung01858 Brassica carinata HOM05D005867 ORTHO05D007273 2.7e-87 325.5 183 80.9
Nitab4.5_0008647g0010 Nicotiana tabacum HOM05D005867 ORTHO05D007273 2.7e-87 325.5 181 82.3
FAN21G2433 Fragaria x ananassa HOM05D005867 ORTHO05D007273 3.5e-87 325.1 184 81.0
PGSC0003DMG400023838 Solanum tuberosum HOM05D005867 ORTHO05D007273 4.6e-87 324.7 184 82.1
BcaNung01174 Brassica carinata HOM05D005867 ORTHO05D007273 6.0e-87 324.3 183 80.9
C02p05880 Brassica napus HOM05D005867 ORTHO05D007273 6.0e-87 324.3 183 80.3
Sopen12g034670 Solanum pennellii HOM05D005867 ORTHO05D007273 6.0e-87 324.3 184 82.1
BraA10t44575Z Brassica rapa HOM05D005867 ORTHO05D007273 2.3e-86 322.4 183 80.3
A10p25130 Brassica napus HOM05D005867 ORTHO05D007273 3.9e-86 321.6 183 80.3
FAN16G1279 Fragaria x ananassa HOM05D005867 ORTHO05D007273 3.9e-86 321.6 184 81.5
Solyc11g061760.3 Solanum lycopersicum HOM05D005867 ORTHO05D007273 8.7e-86 320.5 182 80.2
Sopen11g023660 Solanum pennellii HOM05D005867 ORTHO05D007273 8.7e-86 320.5 182 80.2
Oeu052048.1 Olea europaea HOM05D005867 ORTHO05D007273 1.1e-85 320.1 185 80.0
Aqoxy1G00241 Aquilegia oxysepala HOM05D005867 ORTHO05D007273 3.3e-85 318.5 184 82.1
unitig_21.g20645 Utricularia gibba HOM05D005867 ORTHO05D007273 4.3e-85 318.2 186 77.4
TWI34G0922 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 9.6e-85 317.0 172 85.5
C09p64030 Brassica napus HOM05D005867 ORTHO05D007273 3.7e-84 315.1 183 78.7
BolC9t59241H Brassica oleracea HOM05D005867 ORTHO05D007273 3.7e-84 315.1 183 78.7
Duzib150G0087 Durio zibethinus HOM05D005867 ORTHO05D007273 2.4e-83 312.4 183 82.5
arahy.Tifrunner.gnm1.ann1.V9D8IR Arachis hypogaea HOM05D005867 ORTHO05D007273 4.0e-83 311.6 186 79.0
Lalb_Chr14g0372181 Lupinus albus HOM05D005867 ORTHO05D007273 6.9e-83 310.8 186 78.5
arahy.Tifrunner.gnm1.ann1.2D2P15 Arachis hypogaea HOM05D005867 ORTHO05D007273 9.0e-83 310.5 186 78.5
PSO384G4422 Papaver somniferum HOM05D005867 ORTHO05D007273 4.5e-82 308.1 187 80.2
Lj3g0003495 Lotus japonicus HOM05D005867 ORTHO05D007273 5.8e-82 307.8 186 79.6
PSO339G4569 Papaver somniferum HOM05D005867 ORTHO05D007273 2.2e-81 305.8 187 79.7
Ca_01285_v3 Cicer arietinum L. HOM05D005867 ORTHO05D007273 3.2e-80 302.0 186 76.9
MBI17_g30524_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 7.1e-80 300.8 173 80.9
Cfa009734 Carpinus fangiana HOM05D005867 ORTHO05D007273 9.3e-80 300.4 185 75.7
TPR.G6870 Trifolium pratense HOM05D005867 ORTHO05D007273 1.2e-79 300.1 186 76.3
Medtr1g058050 Medicago truncatula HOM05D005867 ORTHO05D007273 1.8e-78 296.2 186 75.8
Psat5g287440 Pisum sativum HOM05D005867 ORTHO05D007273 3.9e-78 295.0 186 75.3
Medtr2g017985 Medicago truncatula HOM05D005867 ORTHO05D007273 5.1e-78 294.7 186 74.7
Medtr8g096810 Medicago truncatula HOM05D005867 ORTHO05D007273 1.1e-77 293.5 186 74.7
Medtr2g098170 Medicago truncatula HOM05D005867 ORTHO05D007273 1.9e-77 292.7 186 74.7
QL01p005297 Quercus lobata HOM05D005867 ORTHO05D007273 9.6e-77 290.4 184 72.8
CiPaw.13G163500 Carya illinoinensis HOM05D005867 ORTHO05D007273 8.2e-76 287.3 186 71.5
ATR0605G298 Amborella trichopoda HOM05D005867 ORTHO05D007273 2.1e-71 272.7 186 69.4
Mapoly0061s0125 Marchantia polymorpha HOM05D005867 ORTHO05D007273 1.2e-63 246.9 183 56.8
SMO147G0033 Selaginella moellendorffii HOM05D005867 ORTHO05D007273 7.4e-61 237.7 181 59.1
Os02g0717900 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 3.4e-58 228.8 187 56.7
MBI01_g27622_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 1.0e-57 227.3 172 66.3
Pp3c14_26010 Physcomitrium patens HOM05D005867 ORTHO05D007273 8.5e-57 224.2 177 55.4
Pp3c1_37310 Physcomitrium patens HOM05D005867 ORTHO05D007273 1.6e-55 219.9 183 53.0
CBR_g20418 Chara braunii HOM05D005867 ORTHO05D007273 6.1e-55 218.0 181 54.7
HPP92_022794 Vanilla planifolia HOM05D005867 ORTHO05D007273 2.0e-45 186.4 151 55.6
Os09g0486000 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 5.3e-43 178.3 180 50.6
Lj2P647T17 Lonicera japonica HOM05D005867 ORTHO05D007273 2.6e-37 159.5 89 83.1
Zm00001eb316590 Zea mays HOM05D005867 ORTHO05D007273 1.2e-34 150.6 194 43.3
Zm00001eb189280 Zea mays HOM05D005867 ORTHO05D007273 7.0e-27 124.8 88 65.9
Mapoly0008s0230 Marchantia polymorpha HOM05D005867 ORTHO05D254737 1.0e-22 110.9 157 35.0
Actinidia28459 Actinidia chinensis HOM05D005867 ORTHO05D055216 2.8e-20 102.8 54 85.2
Cfa022043 Carpinus fangiana HOM05D002321 ORTHO05D006940 1.7e-09 67.0 88 38.6


User provided reference genes

Program Settings