Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G0280 Trochodendron aralioides HOM05D007019 ORTHO05D008398 4.2e-190 667.9 350 100.0
MBI14_g16432_MAGBIO Magnolia biondii HOM05D007019 ORTHO05D008398 9.8e-139 497.3 350 76.0
Nn6g33490 Nelumbo nucifera HOM05D007019 ORTHO05D008398 1.2e-136 490.3 360 71.9
QL02p018053 Quercus lobata HOM05D007019 ORTHO05D008398 3.3e-134 482.3 346 71.4
Eucgr.C04032 Eucalyptus grandis HOM05D007019 ORTHO05D008398 7.2e-134 481.1 353 70.8
Actinidia14141 Actinidia chinensis HOM05D007019 ORTHO05D008398 2.8e-133 479.2 345 70.1
CiPaw.07G232900 Carya illinoinensis HOM05D007019 ORTHO05D008398 8.0e-133 477.6 345 72.5
Cfa013011 Carpinus fangiana HOM05D007019 ORTHO05D008398 1.0e-132 477.2 345 71.0
Lj7A737G40 Lonicera japonica HOM05D007019 ORTHO05D008398 1.8e-132 476.5 352 69.3
arahy.Tifrunner.gnm1.ann1.SS16UG Arachis hypogaea HOM05D007019 ORTHO05D008398 2.6e-131 472.6 343 68.5
Manes.16G132200 Manihot esculenta HOM05D007019 ORTHO05D008398 2.6e-131 472.6 345 69.9
Hma1.2p1_0737F.1_g210790 Hydrangea macrophylla HOM05D007019 ORTHO05D008398 1.7e-130 469.9 348 71.3
Atru.chr7.2574 Acer truncatum HOM05D007019 ORTHO05D008398 2.2e-130 469.5 342 70.2
Aqoxy7G03288 Aquilegia oxysepala HOM05D007019 ORTHO05D008398 2.2e-130 469.5 347 70.9
Gorai.009G064200 Gossypium raimondii HOM05D007019 ORTHO05D008398 4.9e-130 468.4 347 69.2
Ciclev10008089m.g Citrus clementina HOM05D007019 ORTHO05D008398 6.3e-130 468.0 346 67.9
Duzib168G1437 Durio zibethinus HOM05D007019 ORTHO05D008398 1.1e-129 467.2 348 69.0
Thecc.09G013400 Theobroma cacao HOM05D007019 ORTHO05D008398 1.4e-129 466.8 349 68.5
DCAR_003030 Daucus carota HOM05D007019 ORTHO05D008398 1.8e-129 466.5 341 68.6
arahy.Tifrunner.gnm1.ann1.MG10WM Arachis hypogaea HOM05D007019 ORTHO05D008398 4.1e-129 465.3 344 68.0
CSS0016918 Camellia sinensis var. sinensis HOM05D007019 ORTHO05D008398 4.1e-129 465.3 345 69.0
CSS0023374 Camellia sinensis var. sinensis HOM05D007019 ORTHO05D008398 4.1e-129 465.3 345 69.0
Gohir.A05G061000 Gossypium hirsutum HOM05D007019 ORTHO05D008398 5.4e-129 464.9 347 68.6
Gohir.D05G063200 Gossypium hirsutum HOM05D007019 ORTHO05D008398 7.0e-129 464.5 347 68.9
COL.COLO4_18972 Corchorus olitorius HOM05D007019 ORTHO05D008398 4.5e-128 461.8 349 69.3
FvH4_2g41350 Fragaria vesca HOM05D007019 ORTHO05D008398 7.8e-128 461.1 343 67.9
Potri.018G016200 Populus trichocarpa HOM05D007019 ORTHO05D008398 7.8e-128 461.1 345 69.6
Glyma.08G321000 Glycine max HOM05D007019 ORTHO05D008398 1.3e-127 460.3 346 68.2
ClCG08G013800 Citrullus lanatus HOM05D007019 ORTHO05D008398 2.3e-127 459.5 348 69.3
MSTRG.1627 Avicennia marina HOM05D007019 ORTHO05D008398 2.9e-127 459.1 343 69.4
Prupe.1G396900 Prunus persica HOM05D007019 ORTHO05D008398 5.0e-127 458.4 346 68.8
Glyma.18G091000 Glycine max HOM05D007019 ORTHO05D008398 8.6e-127 457.6 345 67.2
TWI32G0429 Tripterygium wilfordii HOM05D007019 ORTHO05D008398 8.6e-127 457.6 345 67.5
Lj6g0025581 Lotus japonicus HOM05D007019 ORTHO05D008398 1.9e-126 456.4 345 68.4
Cc00_g05220 Coffea canephora HOM05D007019 ORTHO05D008398 2.5e-126 456.1 349 67.0
PGR044G2245 Punica granatum HOM05D007019 ORTHO05D008398 2.5e-126 456.1 353 67.7
VMungo0540G1233 Vigna mungo HOM05D007019 ORTHO05D008398 3.3e-126 455.7 351 66.4
Cpa.g.sc148.46 Carica papaya HOM05D007019 ORTHO05D008398 4.3e-126 455.3 353 68.6
Oeu021907.1 Olea europaea HOM05D007019 ORTHO05D008398 6.1e-125 451.4 344 67.7
Psat5g174160 Pisum sativum HOM05D007019 ORTHO05D008398 1.4e-124 450.3 345 65.8
MELO3C011312.2 Cucumis melo HOM05D007019 ORTHO05D008398 1.8e-124 449.9 348 66.7
FAN27G2994 Fragaria x ananassa HOM05D007019 ORTHO05D008398 1.8e-124 449.9 343 66.8
PSO731G0070 Papaver somniferum HOM05D007019 ORTHO05D008398 1.8e-124 449.9 349 67.0
Rhsim02G0217600 Rhododendron simsii HOM05D007019 ORTHO05D008398 8.9e-124 447.6 342 67.8
PSO210G0129 Papaver somniferum HOM05D007019 ORTHO05D008398 1.5e-123 446.8 355 67.0
Ca_26389_v3 Cicer arietinum L. HOM05D007019 ORTHO05D008398 2.0e-123 446.4 345 66.4
Lalb_Chr15g0081591 Lupinus albus HOM05D007019 ORTHO05D008398 3.4e-123 445.7 345 66.7
CsaV3_2G032590 Cucumis sativus L. HOM05D007019 ORTHO05D008398 4.4e-123 445.3 348 65.8
Phvul.006G047900 Phaseolus vulgaris HOM05D007019 ORTHO05D008398 6.4e-122 441.4 346 64.7
CANSAT25G0065 Cannabis sativa HOM05D007019 ORTHO05D008398 8.3e-122 441.0 353 65.7
RcHm_v2.0_Chr6g0299181 Rosa chinensis HOM05D007019 ORTHO05D008398 8.3e-122 441.0 344 67.2
Hund25606 Selenicereus undatus HOM05D007019 ORTHO05D008398 1.1e-121 440.7 367 64.0
Sc23g0006120 Simmondsia chinensis HOM05D007019 ORTHO05D008398 1.1e-121 440.7 363 65.3
CAN.G273.24 Capsicum annuum HOM05D007019 ORTHO05D008398 1.6e-120 436.8 351 63.0
PGSC0003DMG400014784 Solanum tuberosum HOM05D007019 ORTHO05D008398 2.7e-120 436.0 351 62.1
Medtr3g053700 Medicago truncatula HOM05D007019 ORTHO05D008398 7.8e-120 434.5 345 64.9
TPR.G32253 Trifolium pratense HOM05D007019 ORTHO05D008398 1.0e-119 434.1 345 63.5
Thhalv10000137m.g Eutrema salsugineum HOM05D007019 ORTHO05D008398 2.3e-119 433.0 353 62.9
ATR0580G102 Amborella trichopoda HOM05D007019 ORTHO05D008398 3.9e-119 432.2 361 61.8
Sed0002524 Sechium edule HOM05D007019 ORTHO05D008398 3.9e-119 432.2 355 63.4
Aa31LG7G11570 Aethionema arabicum HOM05D007019 ORTHO05D008398 6.6e-119 431.4 359 62.1
CDE04G0815 Ceratophyllum demersum HOM05D007019 ORTHO05D008398 6.6e-119 431.4 361 63.2
Migut.E01445 Erythranthe guttata HOM05D007019 ORTHO05D008398 1.1e-118 430.6 342 63.2
Sp4g03850 Schrenkiella parvula HOM05D007019 ORTHO05D008398 1.2e-117 427.2 363 61.4
Sopen08g022560 Solanum pennellii HOM05D007019 ORTHO05D008398 2.1e-117 426.4 351 61.3
AL4G15870 Arabidopsis lyrata HOM05D007019 ORTHO05D008398 2.8e-117 426.0 361 60.9
unitig_46.g18223 Utricularia gibba HOM05D007019 ORTHO05D008398 6.2e-117 424.9 353 60.6
HPP92_010745 Vanilla planifolia HOM05D007019 ORTHO05D008398 8.9e-116 421.0 352 61.4
AT2G24830 Arabidopsis thaliana HOM05D007019 ORTHO05D008398 1.5e-115 420.2 360 61.7
CARHR294580 Cardamine hirsuta HOM05D007019 ORTHO05D008398 1.5e-115 420.2 365 61.1
Carub.0004s0445 Capsella rubella HOM05D007019 ORTHO05D008398 3.4e-115 419.1 360 61.1
THA.LOC104819948 Tarenaya hassleriana HOM05D007019 ORTHO05D008398 5.8e-115 418.3 367 60.5
ECA240G4302 Erigeron canadensis HOM05D007019 ORTHO05D008398 2.9e-114 416.0 369 60.2
Solyc08g068820.3 Solanum lycopersicum HOM05D007019 ORTHO05D008398 1.4e-113 413.7 351 61.3
EL10Ac2g02454 Beta vulgaris HOM05D007019 ORTHO05D008398 7.0e-113 411.4 395 58.2
Zm00001eb257650 Zea mays HOM05D007019 ORTHO05D008398 7.0e-113 411.4 346 62.4
Sabra18G0019700 Salix brachista HOM05D007019 ORTHO05D008398 3.5e-112 409.1 371 61.7
HanXRQChr03g0084841 Helianthus annuus HOM05D007019 ORTHO05D008398 3.9e-111 405.6 366 59.6
Lsat_1_v5_gn_6_78060 Lactuca sativa HOM05D007019 ORTHO05D008398 1.1e-110 404.1 353 62.0
SGA_v2.0_scaffold169G38600 Striga asiatica HOM05D007019 ORTHO05D008398 1.6e-109 400.2 360 59.7
SEGI_04420 Sequoiadendron giganteum HOM05D007019 ORTHO05D008398 1.5e-107 393.7 350 60.0
FAN15G0718 Fragaria x ananassa HOM05D007019 ORTHO05D008398 5.8e-107 391.7 362 59.1
A09p56090 Brassica napus HOM05D007019 ORTHO05D008398 9.9e-107 391.0 364 58.2
Nitab4.5_0000406g0110 Nicotiana tabacum HOM05D007019 ORTHO05D008398 1.7e-106 390.2 351 59.3
BraA09t41004Z Brassica rapa HOM05D007019 ORTHO05D008398 2.2e-106 389.8 367 57.8
C08p39020 Brassica napus HOM05D007019 ORTHO05D008398 2.4e-105 386.3 363 57.6
BolC8t51475H Brassica oleracea HOM05D007019 ORTHO05D008398 7.1e-105 384.8 363 57.3
A09p56030 Brassica napus HOM05D007019 ORTHO05D008398 1.6e-104 383.6 359 57.9
Nitab4.5_0012106g0030 Nicotiana tabacum HOM05D007019 ORTHO05D008398 2.3e-103 379.8 345 60.3
AUR62032443 Chenopodium quinoa HOM05D007019 ORTHO05D008398 3.1e-100 369.4 370 56.2
BcaC07g40903 Brassica carinata HOM05D007019 ORTHO05D008398 3.4e-99 365.9 352 56.0
AUR62024776 Chenopodium quinoa HOM05D007019 ORTHO05D008398 3.4e-99 365.9 390 53.6
vmacro11274 Vaccinium macrocarpon HOM05D007019 ORTHO05D008398 4.6e-96 355.5 343 59.2
Dinv03401 Davidia involucrata HOM05D007019 ORTHO05D008398 4.0e-84 315.8 215 74.9
Pp3c21_5730 Physcomitrium patens HOM05D007019 ORTHO05D008398 3.5e-80 302.8 343 48.1
MD08G1051900 Malus domestica HOM05D007019 ORTHO05D008398 7.4e-78 295.0 199 72.4
Mapoly0067s0020 Marchantia polymorpha HOM05D007019 ORTHO05D008398 2.4e-76 290.0 354 45.8
SMO116G0382 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 4.6e-72 275.8 342 47.7
GSVIVG01036005001 Vitis vinifera HOM05D007019 ORTHO05D008398 1.8e-68 263.8 191 70.7
Hma1.2p1_0737F.1_g210800 Hydrangea macrophylla HOM05D007019 ORTHO05D008398 3.2e-65 253.1 176 72.7
SHI21092 Sapria himalayana HOM05D007019 ORTHO05D008398 1.7e-58 230.7 428 37.4
Dinv10229 Davidia involucrata HOM05D007019 ORTHO05D008398 8.8e-55 218.4 168 68.5
AagrBONN_evm.TU.Sc2ySwM_117.1463 Anthoceros agrestis HOM05D007019 ORTHO05D008398 1.9e-41 174.1 214 46.7
CBR_g30106 Chara braunii HOM05D007019 ORTHO05D008398 2.3e-39 167.2 408 34.6
SalBow6G1623 Salvia bowleyana HOM05D007019 ORTHO05D008398 8.2e-37 158.7 145 60.0
Peaxi162Scf01419g00115 Petunia axillaris HOM05D007019 ORTHO05D008398 2.5e-33 147.1 143 57.3
Os02g0793000 Oryza sativa ssp. japonica HOM05D007019 ORTHO05D008398 1.2e-27 128.3 109 58.7
AagrBONN_evm.TU.Sc2ySwM_117.1462 Anthoceros agrestis HOM05D007019 ORTHO05D008398 2.7e-19 100.5 150 40.7
SMO116G0105 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 7.2e-17 92.4 162 37.7
CANSAT11G2415 Cannabis sativa HOM05D004574 ORTHO05D005612 4.0e-07 60.1 65 44.6
Lsat_1_v5_gn_5_90461 Lactuca sativa HOM05D004574 ORTHO05D005612 4.0e-07 60.1 49 57.1
CSS0028433 Camellia sinensis var. sinensis HOM05D004574 ORTHO05D005612 6.8e-07 59.3 73 43.8
Cre07.g355700 Chlamydomonas reinhardtii HOM05D007019 ORTHO05D008398 1.5e-06 58.2 71 40.8
HanXRQChr12g0357011 Helianthus annuus HOM05D004574 ORTHO05D005612 4.4e-06 56.6 57 49.1
CAN.G518.8 Capsicum annuum HOM05D004574 ORTHO05D005612 5.8e-06 56.2 56 44.6
Solyc07g007040.4 Solanum lycopersicum HOM05D004574 ORTHO05D005612 5.8e-06 56.2 56 44.6
Sopen07g003110 Solanum pennellii HOM05D004574 ORTHO05D005612 5.8e-06 56.2 56 44.6
Actinidia21909 Actinidia chinensis HOM05D004574 ORTHO05D005612 7.5e-06 55.8 73 41.1
MD02G1012700 Malus domestica HOM05D004574 ORTHO05D005612 7.5e-06 55.8 65 41.5
arahy.Tifrunner.gnm1.ann1.J06XH2 Arachis hypogaea HOM05D004574 ORTHO05D005612 9.8e-06 55.5 59 44.1
Ciclev10007567m.g Citrus clementina HOM05D004574 ORTHO05D005612 9.8e-06 55.5 46 56.5
MD15G1158500 Malus domestica HOM05D004574 ORTHO05D005612 9.8e-06 55.5 55 49.1
Nitab4.5_0001151g0100 Nicotiana tabacum HOM05D004574 ORTHO05D005612 9.8e-06 55.5 56 44.6


User provided reference genes

Program Settings