Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G0254 Trochodendron aralioides HOM05D003812 ORTHO05D004393 3.2e-176 621.7 331 100.0
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 2.6e-133 479.2 268 96.6
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 4.2e-67 259.2 270 58.9
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 2.3e-65 253.4 265 57.7
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 9.8e-64 248.1 265 57.4
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 1.7e-63 247.3 269 56.9
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.8e-62 243.8 264 60.6
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 2.3e-57 226.9 266 57.9
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 8.8e-57 224.9 265 50.2
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 1.2e-56 224.6 265 50.6
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 7.5e-56 221.9 257 47.5
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 3.7e-55 219.5 273 54.9
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 3.7e-55 219.5 257 48.2
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 2.4e-54 216.9 265 52.8
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 2.7e-53 213.4 265 55.1
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 4.5e-53 212.6 258 53.5
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 5.9e-53 212.2 264 48.5
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 7.7e-53 211.8 265 51.3
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 7.7e-53 211.8 258 52.3
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 1.7e-52 210.7 265 46.8
RcHm_v2.0_Chr2g0084521 Rosa chinensis HOM05D003812 ORTHO05D004393 2.9e-52 209.9 265 48.3
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 6.6e-52 208.8 265 51.7
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 4.3e-51 206.1 258 49.2
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 1.2e-50 204.5 265 47.5
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 1.2e-50 204.5 268 47.8
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 3.6e-50 203.0 242 52.1
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 2.3e-49 200.3 267 51.7
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 6.8e-49 198.7 265 44.9
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 8.9e-49 198.4 266 43.2
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 1.5e-48 197.6 310 45.8
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 1.5e-48 197.6 265 46.4
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 2.0e-48 197.2 265 45.7
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 9.8e-48 194.9 265 42.3
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 1.3e-47 194.5 268 44.4
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 3.7e-47 193.0 251 43.4
Carub.0005s1565 Capsella rubella HOM05D003812 ORTHO05D004393 8.3e-47 191.8 259 42.9
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 1.1e-46 191.4 265 44.2
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 1.1e-46 191.4 254 47.2
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 2.4e-46 190.3 254 48.0
FAN23G1808 Fragaria x ananassa HOM05D003812 ORTHO05D004393 2.4e-46 190.3 273 44.7
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 2.4e-46 190.3 254 49.6
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 3.2e-46 189.9 254 49.2
Nn1g08161 Nelumbo nucifera HOM05D003812 ORTHO05D004393 5.4e-46 189.1 208 64.4
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 2.0e-45 187.2 260 50.0
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 5.9e-45 185.7 265 42.3
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 5.9e-45 185.7 265 42.3
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 7.8e-45 185.3 257 44.7
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 1.0e-44 184.9 255 42.7
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 1.0e-44 184.9 263 46.8
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 1.3e-44 184.5 261 42.1
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 1.7e-44 184.1 264 42.4
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 1.7e-44 184.1 257 44.7
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 3.0e-44 183.3 257 44.7
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 3.9e-44 183.0 256 42.2
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 3.9e-44 183.0 265 40.8
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 3.9e-44 183.0 265 40.8
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 3.9e-44 183.0 265 50.6
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 8.6e-44 181.8 262 42.4
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 2.5e-43 180.3 254 47.2
Lalb_Chr05g0212031 Lupinus albus HOM05D003812 ORTHO05D004393 3.3e-43 179.9 256 44.1
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 7.3e-43 178.7 257 46.3
HanXRQChr05g0135721 Helianthus annuus HOM05D003812 ORTHO05D004393 7.3e-43 178.7 266 48.5
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 9.5e-43 178.3 265 41.1
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 1.2e-42 177.9 254 47.6
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 1.2e-42 177.9 263 49.4
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 1.6e-42 177.6 257 44.0
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 6.2e-42 175.6 287 46.7
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 1.0e-41 174.9 240 47.9
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 1.8e-41 174.1 263 41.4
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 1.2e-40 171.4 265 41.1
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 1.5e-40 171.0 328 38.7
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 2.6e-40 170.2 250 44.4
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 5.8e-40 169.1 265 47.5
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 7.5e-40 168.7 277 45.1
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 2.9e-39 166.8 277 44.8
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 3.7e-39 166.4 259 40.9
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 1.1e-38 164.9 270 39.6
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 1.9e-38 164.1 259 45.2
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 5.4e-38 162.5 166 48.8
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 7.0e-38 162.2 265 40.4
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 1.2e-37 161.4 141 56.0
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 2.7e-37 160.2 264 40.2
AUR62002481 Chenopodium quinoa HOM05D003812 ORTHO05D004393 3.5e-37 159.8 159 52.8
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 6.0e-37 159.1 252 39.3
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 1.0e-36 158.3 257 42.8
HanXRQChr17g0553321 Helianthus annuus HOM05D003812 ORTHO05D004393 3.0e-36 156.8 261 46.0
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 3.9e-36 156.4 254 44.5
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 5.0e-36 156.0 265 44.2
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 5.0e-36 156.0 265 44.2
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 8.6e-36 155.2 254 44.1
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 2.5e-35 153.7 264 43.9
TPR.G11261 Trifolium pratense HOM05D003812 ORTHO05D004393 5.6e-35 152.5 256 44.1
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 9.5e-35 151.8 270 41.5
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 3.6e-34 149.8 254 45.7
HPP92_018576 Vanilla planifolia HOM05D003812 ORTHO05D004393 4.7e-34 149.4 267 44.9
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 1.1e-33 148.3 267 43.4
Nitab4.5_0010162g0010 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.4e-33 147.9 131 58.0
Hund12301 Selenicereus undatus HOM05D003812 ORTHO05D004393 1.8e-33 147.5 255 44.3
Ah.13g073180 Amaranthus hybridus HOM05D003812 ORTHO05D004393 3.1e-33 146.7 137 52.6
ATR0580G030 Amborella trichopoda HOM05D003812 ORTHO05D004393 7.5e-32 142.1 270 37.8
Sc13g0007560 Simmondsia chinensis HOM05D003812 ORTHO05D004393 7.5e-32 142.1 183 49.7
TPR.G23263 Trifolium pratense HOM05D003812 ORTHO05D004393 7.5e-32 142.1 254 41.3
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 1.4e-30 137.9 167 44.3
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 1.2e-29 134.8 255 42.7
Nitab4.5_0003520g0020 Nicotiana tabacum HOM05D003812 ORTHO05D004393 7.8e-29 132.1 110 61.8
arahy.Tifrunner.gnm1.ann1.B1HR4A Arachis hypogaea HOM05D003812 ORTHO05D004393 2.3e-28 130.6 241 43.6
arahy.Tifrunner.gnm1.ann1.CNXN93 Arachis hypogaea HOM05D003812 ORTHO05D004393 2.3e-28 130.6 241 43.6
MBI16_g46635_MAGBIO Magnolia biondii HOM05D000963 ORTHO05D005131 3.0e-28 130.2 285 38.6
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.1e-27 128.3 184 44.6
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 2.5e-27 127.1 260 36.5
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 1.1e-25 121.7 121 55.4
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 1.4e-25 121.3 142 49.3
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 2.3e-25 120.6 142 49.3
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 6.8e-25 119.0 260 33.8
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 7.6e-24 115.5 107 54.2
Haze_11132 Corylus avellana HOM05D003812 ORTHO05D004393 1.0e-20 105.1 265 35.8
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 1.7e-20 104.4 78 59.0
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 4.7e-18 96.3 196 38.8
Hund12275 Selenicereus undatus HOM05D003812 ORTHO05D004393 8.1e-18 95.5 211 43.6
Hma1.2p1_0381F.1_g140070 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 1.4e-17 94.7 187 37.4
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 9.9e-16 88.6 140 37.1
Pp3c16_3240 Physcomitrium patens HOM05D003812 ORTHO05D004393 9.9e-16 88.6 229 31.0
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 1.3e-15 88.2 159 39.0
Cc06_g19240 Coffea canephora HOM05D003812 ORTHO05D004393 1.3e-15 88.2 63 60.3
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 3.8e-15 86.7 121 39.7
SMO367G0920 Selaginella moellendorffii HOM05D003812 ORTHO05D004393 4.9e-15 86.3 117 38.5
SEGI_01468 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 1.1e-14 85.1 68 57.4
vmacro06692 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 1.4e-14 84.7 81 60.5
Oeu022463.3 Olea europaea HOM05D003812 ORTHO05D004393 7.1e-14 82.4 185 41.6
Hma1.2p1_0381F.1_g140060 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 1.5e-11 74.7 45 71.1
vmacro06691 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 3.3e-11 73.6 54 59.3
Cc06_g19280 Coffea canephora HOM05D003812 ORTHO05D004393 2.4e-09 67.4 82 48.8
Cc00_g35850 Coffea canephora HOM05D003812 ORTHO05D004393 9.0e-09 65.5 187 34.2
arahy.Tifrunner.gnm1.ann1.C22IND Arachis hypogaea HOM05D003812 ORTHO05D004393 1.2e-08 65.1 46 60.9
arahy.Tifrunner.gnm1.ann1.NBB910 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.2e-08 65.1 46 60.9
arahy.Tifrunner.gnm1.ann1.8MB3N8 Arachis hypogaea HOM05D003812 ORTHO05D004393 2.0e-08 64.3 46 60.9
arahy.Tifrunner.gnm1.ann1.WBRQ5K Arachis hypogaea HOM05D003812 ORTHO05D004393 5.8e-08 62.8 46 58.7
PGSC0003DMG400007789 Solanum tuberosum HOM05D003812 ORTHO05D004393 1.7e-07 61.2 166 45.2
SEGI_26047 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 4.2e-06 56.6 199 39.7


User provided reference genes

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