Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G0224 Trochodendron aralioides HOM05D003709 ORTHO05D004364 5.0e-137 491.1 249 100.0
Nn6g34801 Nelumbo nucifera HOM05D003709 ORTHO05D004364 8.0e-18 95.1 141 41.8
CSS0019397 Camellia sinensis var. sinensis HOM05D003709 ORTHO05D004364 8.8e-17 91.7 141 41.8
CSS0033506 Camellia sinensis var. sinensis HOM05D003709 ORTHO05D004364 1.1e-16 91.3 141 41.8
CSS0048031 Camellia sinensis var. sinensis HOM05D003709 ORTHO05D004364 4.4e-16 89.4 141 40.4
Dinv31727 Davidia involucrata HOM05D003709 ORTHO05D004364 4.4e-16 89.4 141 39.7
PSO357G0160 Papaver somniferum HOM05D003709 ORTHO05D004364 2.2e-15 87.0 138 39.9
vmacro07432 Vaccinium macrocarpon HOM05D003709 ORTHO05D004364 4.8e-15 85.9 138 39.1
Duzib093G0911 Durio zibethinus HOM05D003709 ORTHO05D004364 1.1e-14 84.7 135 40.0
Cpa.g.c29173.2 Carica papaya HOM05D003709 ORTHO05D004364 1.4e-14 84.3 142 38.7
MBI17_g01496_MAGBIO Magnolia biondii HOM05D003709 ORTHO05D004364 1.4e-14 84.3 138 39.1
GSVIVG01033901001 Vitis vinifera HOM05D003709 ORTHO05D004364 1.4e-14 84.3 137 39.4
PGR004G2656 Punica granatum HOM05D003709 ORTHO05D004364 9.1e-14 81.6 144 40.3
Hma1.2p1_0245F.1_g101590 Hydrangea macrophylla HOM05D003709 ORTHO05D004364 1.2e-13 81.3 138 39.1
Gorai.004G000400 Gossypium raimondii HOM05D003709 ORTHO05D004364 2.0e-13 80.5 135 40.0
Actinidia05396 Actinidia chinensis HOM05D003709 ORTHO05D004364 3.5e-13 79.7 141 36.2
Gohir.A09G141700 Gossypium hirsutum HOM05D003709 ORTHO05D004364 3.5e-13 79.7 137 38.0
Oeu007203.1 Olea europaea HOM05D003709 ORTHO05D004364 3.5e-13 79.7 138 39.9
Aqoxy4G02712 Aquilegia oxysepala HOM05D003709 ORTHO05D004364 5.9e-13 79.0 141 39.7
Gohir.D09G133000 Gossypium hirsutum HOM05D003709 ORTHO05D004364 5.9e-13 79.0 137 38.0
Manes.08G029100 Manihot esculenta HOM05D003709 ORTHO05D004364 5.9e-13 79.0 142 38.0
TAR623G0195 Trochodendron aralioides HOM05D003709 ORTHO05D004364 5.9e-13 79.0 129 41.1
AUR62028486 Chenopodium quinoa HOM05D003709 ORTHO05D004364 1.0e-12 78.2 140 38.6
Gorai.006G152500 Gossypium raimondii HOM05D003709 ORTHO05D004364 1.3e-12 77.8 137 37.2
Rhsim03G0069600 Rhododendron simsii HOM05D003709 ORTHO05D004364 1.3e-12 77.8 156 35.3
AUR62006246 Chenopodium quinoa HOM05D003709 ORTHO05D004364 1.7e-12 77.4 139 38.8
Lj1C125T5 Lonicera japonica HOM05D003709 ORTHO05D004364 1.7e-12 77.4 139 38.8
TWI77G0334 Tripterygium wilfordii HOM05D003709 ORTHO05D004364 1.7e-12 77.4 138 35.5
Glyma.19G196500 Glycine max HOM05D003709 ORTHO05D004364 2.2e-12 77.0 141 36.9
Gohir.A12G074200 Gossypium hirsutum HOM05D003709 ORTHO05D004364 2.2e-12 77.0 136 40.4
Lalb_Chr20g0111541 Lupinus albus HOM05D003709 ORTHO05D004364 2.2e-12 77.0 141 37.6
FvH4_2g10910 Fragaria vesca HOM05D003709 ORTHO05D004364 2.9e-12 76.6 141 36.9
FAN24G0281 Fragaria x ananassa HOM05D003709 ORTHO05D004364 2.9e-12 76.6 141 36.9
Glyma.03G198800 Glycine max HOM05D003709 ORTHO05D004364 2.9e-12 76.6 146 36.3
FAN15G3210 Fragaria x ananassa HOM05D003709 ORTHO05D004364 3.8e-12 76.3 141 36.9
FAN27G1255 Fragaria x ananassa HOM05D003709 ORTHO05D004364 3.8e-12 76.3 141 36.9
PSO339G2742 Papaver somniferum HOM05D003709 ORTHO05D004364 3.8e-12 76.3 139 37.4
DCAR_020733 Daucus carota HOM05D003709 ORTHO05D004364 5.0e-12 75.9 138 37.0
Thecc.05G096700 Theobroma cacao HOM05D003709 ORTHO05D004364 5.0e-12 75.9 141 36.9
EL10Ac7g16841 Beta vulgaris HOM05D003709 ORTHO05D004364 6.5e-12 75.5 141 36.2
EL10Ac7g16842 Beta vulgaris HOM05D003709 ORTHO05D004364 6.5e-12 75.5 141 36.2
FAN20G0151 Fragaria x ananassa HOM05D003709 ORTHO05D004364 6.5e-12 75.5 141 36.2
Lj2g0024912 Lotus japonicus HOM05D003709 ORTHO05D004364 6.5e-12 75.5 141 37.6
Prupe.8G077900 Prunus persica HOM05D003709 ORTHO05D004364 6.5e-12 75.5 138 39.1
QL07p038048 Quercus lobata HOM05D003709 ORTHO05D004364 6.5e-12 75.5 139 38.1
Ca_09030_v3 Cicer arietinum L. HOM05D003709 ORTHO05D004364 8.5e-12 75.1 141 36.9
Actinidia12698 Actinidia chinensis HOM05D003709 ORTHO05D004364 1.1e-11 74.7 141 35.5
Actinidia18412 Actinidia chinensis HOM05D003709 ORTHO05D004364 1.1e-11 74.7 141 35.5
Potri.016G074700 Populus trichocarpa HOM05D003709 ORTHO05D004364 1.9e-11 73.9 134 36.6
ClCG03G000710 Citrullus lanatus HOM05D003709 ORTHO05D004364 2.5e-11 73.6 138 38.4
Phvul.001G193000 Phaseolus vulgaris HOM05D003709 ORTHO05D004364 2.5e-11 73.6 139 38.1
PGSC0003DMG400028247 Solanum tuberosum HOM05D003709 ORTHO05D004364 3.2e-11 73.2 138 35.5
Peaxi162Scf00096g00098 Petunia axillaris HOM05D003709 ORTHO05D004364 4.2e-11 72.8 138 35.5
VMungo1383G1751 Vigna mungo HOM05D003709 ORTHO05D004364 4.2e-11 72.8 139 36.7
MD10G1058500 Malus domestica HOM05D003709 ORTHO05D004364 5.5e-11 72.4 139 38.1
Nitab4.5_0001801g0070 Nicotiana tabacum HOM05D003709 ORTHO05D004364 5.5e-11 72.4 138 35.5
Sopen10g032700 Solanum pennellii HOM05D003709 ORTHO05D004364 5.5e-11 72.4 138 35.5
MD05G1051100 Malus domestica HOM05D003709 ORTHO05D004364 7.2e-11 72.0 139 38.1
CAN.G841.14 Capsicum annuum HOM05D003709 ORTHO05D004364 9.4e-11 71.6 138 34.8
TPR.G23331 Trifolium pratense HOM05D003709 ORTHO05D004364 9.4e-11 71.6 141 34.8
Eucgr.A02626 Eucalyptus grandis HOM05D003709 ORTHO05D004364 1.2e-10 71.2 138 34.8
Sabra16G0080200 Salix brachista HOM05D003709 ORTHO05D004364 1.2e-10 71.2 134 35.8
HanXRQChr08g0228531 Helianthus annuus HOM05D003709 ORTHO05D004364 2.1e-10 70.5 135 34.8
Haze_19660 Corylus avellana HOM05D003709 ORTHO05D004364 2.7e-10 70.1 143 39.2
Gorai.007G357100 Gossypium raimondii HOM05D003709 ORTHO05D004364 3.6e-10 69.7 131 35.9
Sed0021250 Sechium edule HOM05D003709 ORTHO05D004364 3.6e-10 69.7 141 37.6
Ciclev10013818m.g Citrus clementina HOM05D003709 ORTHO05D004364 4.7e-10 69.3 140 37.1
HPP92_028584 Vanilla planifolia HOM05D003709 ORTHO05D004364 4.7e-10 69.3 147 34.0
Cc06_g06250 Coffea canephora HOM05D003709 ORTHO05D004364 1.0e-09 68.2 137 36.5
Migut.J00663 Erythranthe guttata HOM05D003709 ORTHO05D004364 1.0e-09 68.2 138 36.2
Medtr7g105350 Medicago truncatula HOM05D003709 ORTHO05D004364 1.0e-09 68.2 141 36.2
Ciclev10012932m.g Citrus clementina HOM05D003709 ORTHO05D004364 1.4e-09 67.8 140 35.0
MSTRG.5871 Avicennia marina HOM05D003709 ORTHO05D004364 1.8e-09 67.4 136 36.0
CANSAT64G1889 Cannabis sativa HOM05D003709 ORTHO05D004364 1.8e-09 67.4 138 32.6
MELO3C009499.2 Cucumis melo HOM05D003709 ORTHO05D004364 1.8e-09 67.4 138 35.5
THA.LOC104803461 Tarenaya hassleriana HOM05D003709 ORTHO05D004364 1.8e-09 67.4 132 37.9
THA.LOC104826817 Tarenaya hassleriana HOM05D003709 ORTHO05D004364 1.8e-09 67.4 132 37.9
Gohir.A01G177700 Gossypium hirsutum HOM05D003709 ORTHO05D004364 2.3e-09 67.0 137 33.6
Solyc10g083220.3 Solanum lycopersicum HOM05D003709 ORTHO05D004364 2.3e-09 67.0 138 36.2
Atru.chr8.1435 Acer truncatum HOM05D003709 ORTHO05D004364 4.0e-09 66.2 135 37.0
Ah.15g090600 Amaranthus hybridus HOM05D003709 ORTHO05D004364 4.0e-09 66.2 138 33.3
CDE04G0652 Ceratophyllum demersum HOM05D003709 ORTHO05D004364 5.2e-09 65.9 138 31.9
Gorai.002G197000 Gossypium raimondii HOM05D003709 ORTHO05D004364 5.2e-09 65.9 131 36.6
ECA247G0210 Erigeron canadensis HOM05D003709 ORTHO05D004364 6.7e-09 65.5 138 33.3
CiPaw.10G014600 Carya illinoinensis HOM05D003709 ORTHO05D004364 8.8e-09 65.1 86 41.9
Dinv21156 Davidia involucrata HOM05D003709 ORTHO05D004364 8.8e-09 65.1 87 39.1
CsaV3_3G037560 Cucumis sativus L. HOM05D003709 ORTHO05D004364 1.2e-08 64.7 138 36.2
Sabra06G0074500 Salix brachista HOM05D003709 ORTHO05D004364 1.2e-08 64.7 137 33.6
BcaB01g05985 Brassica carinata HOM05D003709 ORTHO05D004364 1.5e-08 64.3 143 33.6
HanXRQChr04g0114081 Helianthus annuus HOM05D003709 ORTHO05D004364 2.6e-08 63.5 138 32.6
RcHm_v2.0_Chr6g0269071 Rosa chinensis HOM05D003709 ORTHO05D004364 2.6e-08 63.5 86 39.5
AUR62028484 Chenopodium quinoa HOM05D003709 ORTHO05D138253 3.3e-08 63.2 49 59.2
AUR62028485 Chenopodium quinoa HOM05D003709 ORTHO05D004364 3.3e-08 63.2 49 59.2
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 5.7e-08 62.4 39 69.2
Gohir.A04G147400 Gossypium hirsutum HOM05D003709 ORTHO05D004364 7.5e-08 62.0 146 32.2
Gohir.A10G101550 Gossypium hirsutum HOM05D003709 ORTHO05D004364 7.5e-08 62.0 141 34.0
Gorai.012G000500 Gossypium raimondii HOM05D003709 ORTHO05D004364 7.5e-08 62.0 149 34.9
Hma1.2p1_1724F.1_g299425 Hydrangea macrophylla HOM05D003709 ORTHO05D004364 7.5e-08 62.0 86 40.7
Lalb_Chr25g0288201 Lupinus albus HOM05D003709 ORTHO05D004364 7.5e-08 62.0 47 57.4
Gohir.A05G416501 Gossypium hirsutum HOM05D001765 ORTHO05D003527 9.7e-08 61.6 76 40.8
Gohir.A05G416901 Gossypium hirsutum HOM05D001765 ORTHO05D003527 9.7e-08 61.6 76 40.8
Psat3g030960 Pisum sativum HOM05D003709 ORTHO05D004364 9.7e-08 61.6 130 35.4
Sp6g36640 Schrenkiella parvula HOM05D003709 ORTHO05D004364 1.3e-07 61.2 132 32.6
BcaC06g32330 Brassica carinata HOM05D003709 ORTHO05D004364 2.8e-07 60.1 132 32.6
BcaC06g32333 Brassica carinata HOM05D003709 ORTHO05D004364 2.8e-07 60.1 132 32.6
A10p30240 Brassica napus HOM05D003709 ORTHO05D004364 2.8e-07 60.1 138 33.3
C09p70650 Brassica napus HOM05D003709 ORTHO05D004364 2.8e-07 60.1 132 32.6
BolC9t59821H Brassica oleracea HOM05D003709 ORTHO05D004364 2.8e-07 60.1 132 32.6
BraA10t45062Z Brassica rapa HOM05D003709 ORTHO05D004364 2.8e-07 60.1 138 33.3
Haze_19671 Corylus avellana HOM05D003709 ORTHO05D004364 2.8e-07 60.1 140 34.3
BcaB01g05734 Brassica carinata HOM05D003709 ORTHO05D004364 4.8e-07 59.3 138 31.9
COL.COLO4_29662 Corchorus olitorius HOM05D003709 ORTHO05D004364 4.8e-07 59.3 48 54.2
Thhalv10014881m.g Eutrema salsugineum HOM05D003709 ORTHO05D004364 4.8e-07 59.3 139 32.4
Lsat_1_v5_gn_9_14520 Lactuca sativa HOM05D003709 ORTHO05D004364 6.3e-07 58.9 129 31.8
Gohir.A12G001133 Gossypium hirsutum HOM05D003709 ORTHO05D004364 8.2e-07 58.5 38 65.8
Hma1.2p1_2017F.1_g311180 Hydrangea macrophylla HOM05D003709 ORTHO05D004364 8.2e-07 58.5 154 36.4
Hund28305 Selenicereus undatus HOM05D003709 ORTHO05D004364 8.2e-07 58.5 60 46.7
Gohir.A13G235900 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.1e-06 58.2 86 38.4
Gohir.A13G149700 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.4e-06 57.8 138 33.3
Actinidia27230 Actinidia chinensis HOM05D003709 ORTHO05D004364 1.8e-06 57.4 48 50.0
Actinidia28628 Actinidia chinensis HOM05D003709 ORTHO05D004364 1.8e-06 57.4 48 50.0
Actinidia37294 Actinidia chinensis HOM05D003709 ORTHO05D004364 1.8e-06 57.4 48 50.0
A03p02630 Brassica napus HOM05D003709 ORTHO05D004364 1.8e-06 57.4 138 33.3
BraA03t09624Z Brassica rapa HOM05D003709 ORTHO05D004364 1.8e-06 57.4 138 33.3
CARHR206940 Cardamine hirsuta HOM05D003709 ORTHO05D004364 1.8e-06 57.4 132 32.6
Sabra16G0077300 Salix brachista HOM05D003709 ORTHO05D004364 1.8e-06 57.4 47 51.1
Nitab4.5_0005187g0010 Nicotiana tabacum HOM05D003709 ORTHO05D004364 2.4e-06 57.0 138 34.1
Sc20g0006470 Simmondsia chinensis HOM05D003709 ORTHO05D004364 2.4e-06 57.0 48 52.1
Carub.0006s0511 Capsella rubella HOM05D003709 ORTHO05D004364 5.3e-06 55.8 133 31.6
Gorai.007G188700 Gossypium raimondii HOM05D003709 ORTHO05D004364 7.0e-06 55.5 58 50.0
SGA_v2.0_scaffold123G33400 Striga asiatica HOM05D003709 ORTHO05D004364 7.0e-06 55.5 38 63.2
SGA_v2.0_scaffold13G06687 Striga asiatica HOM05D003709 ORTHO05D004364 9.1e-06 55.1 140 32.1


User provided reference genes

Program Settings