Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G0188 Trochodendron aralioides HOM05D003193 ORTHO05D004924 0.0e+00 1854.3 993 100.0
TAR365G0326 Trochodendron aralioides HOM05D003193 ORTHO05D004924 0.0e+00 1443.7 886 86.3
Nn1g03055 Nelumbo nucifera HOM05D003193 ORTHO05D004924 0.0e+00 1306.2 886 76.1
Dinv06951 Davidia involucrata HOM05D003193 ORTHO05D004924 0.0e+00 1271.1 886 74.3
GSVIVG01026340001 Vitis vinifera HOM05D003193 ORTHO05D004924 0.0e+00 1257.7 889 74.8
QL03p032698 Quercus lobata HOM05D003193 ORTHO05D004924 0.0e+00 1256.5 887 73.8
Atru.chr2.1127 Acer truncatum HOM05D003193 ORTHO05D004924 0.0e+00 1251.9 886 72.8
PSO832G2952 Papaver somniferum HOM05D003193 ORTHO05D004924 0.0e+00 1222.6 886 70.9
PSO764G0333 Papaver somniferum HOM05D003193 ORTHO05D004924 0.0e+00 1222.2 886 70.7
Aqoxy5G00090 Aquilegia oxysepala HOM05D003193 ORTHO05D004924 0.0e+00 1198.0 882 71.1
Ciclev10018428m.g Citrus clementina HOM05D003193 ORTHO05D004924 0.0e+00 1197.2 896 68.8
Potri.019G024200 Populus trichocarpa HOM05D003193 ORTHO05D004924 0.0e+00 1188.7 879 69.9
Prupe.6G353600 Prunus persica HOM05D003193 ORTHO05D004924 0.0e+00 1187.2 889 70.0
Manes.09G146200 Manihot esculenta HOM05D003193 ORTHO05D004924 0.0e+00 1185.6 885 70.1
Sabra19G0034100 Salix brachista HOM05D003193 ORTHO05D004924 0.0e+00 1174.5 879 69.2
Thecc.05G265800 Theobroma cacao HOM05D003193 ORTHO05D004924 0.0e+00 1166.4 882 69.0
Actinidia03822 Actinidia chinensis HOM05D003193 ORTHO05D004924 0.0e+00 1162.5 886 69.2
Duzib177G0185 Durio zibethinus HOM05D003193 ORTHO05D004924 0.0e+00 1160.6 882 68.8
Rhsim05G0170000 Rhododendron simsii HOM05D003193 ORTHO05D004924 0.0e+00 1160.6 905 67.1
Gohir.A11G243500 Gossypium hirsutum HOM05D003193 ORTHO05D004924 0.0e+00 1154.0 882 68.4
MD12G1252000 Malus domestica HOM05D003193 ORTHO05D004924 0.0e+00 1153.3 888 68.7
PGR004G2196 Punica granatum HOM05D003193 ORTHO05D004924 0.0e+00 1151.3 890 68.3
Gorai.007G272000 Gossypium raimondii HOM05D003193 ORTHO05D004924 0.0e+00 1143.6 882 68.1
RcHm_v2.0_Chr3g0449041 Rosa chinensis HOM05D003193 ORTHO05D004924 0.0e+00 1143.3 884 67.0
Gohir.D11G253200 Gossypium hirsutum HOM05D003193 ORTHO05D004924 0.0e+00 1142.5 882 68.1
CANSAT54G2238 Cannabis sativa HOM05D003193 ORTHO05D004924 0.0e+00 1136.3 892 66.3
MBI07_g08903_MAGBIO Magnolia biondii HOM05D003193 ORTHO05D004924 0.0e+00 1130.2 886 68.1
FvH4_6g01410 Fragaria vesca HOM05D003193 ORTHO05D004924 0.0e+00 1127.5 889 66.6
TWI60G0900 Tripterygium wilfordii HOM05D003193 ORTHO05D004924 0.0e+00 1124.8 886 67.6
FAN05G3617 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 1120.5 895 66.6
FAN05G0534 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 1120.1 889 66.9
FAN14G4461 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 1119.8 905 65.5
FAN14G5315 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 1119.8 899 65.7
FAN02G3021 Fragaria x ananassa HOM05D003193 ORTHO05D004924 0.0e+00 1116.3 895 65.7
CAN.G131.15 Capsicum annuum HOM05D003193 ORTHO05D004924 0.0e+00 1115.9 888 63.9
Lj1g0024446 Lotus japonicus HOM05D003193 ORTHO05D004924 0.0e+00 1115.9 887 65.7
Solyc04g050520.3 Solanum lycopersicum HOM05D003193 ORTHO05D004924 0.0e+00 1115.1 888 63.7
Ca_09471_v3 Cicer arietinum L. HOM05D003193 ORTHO05D004924 0.0e+00 1109.0 888 65.1
Eucgr.H04206 Eucalyptus grandis HOM05D003193 ORTHO05D004924 0.0e+00 1105.1 886 64.4
Lalb_Chr04g0261971 Lupinus albus HOM05D003193 ORTHO05D004924 0.0e+00 1092.8 881 64.0
TPR.G4710 Trifolium pratense HOM05D003193 ORTHO05D004924 0.0e+00 1089.3 894 64.8
Glyma.03G252300 Glycine max HOM05D003193 ORTHO05D004924 0.0e+00 1088.9 886 66.0
COL.COLO4_37867 Corchorus olitorius HOM05D003193 ORTHO05D004924 0.0e+00 1085.1 881 65.6
Glyma.19G249900 Glycine max HOM05D003193 ORTHO05D004924 0.0e+00 1082.0 886 65.3
Psat0s4268g0040 Pisum sativum HOM05D003193 ORTHO05D004924 0.0e+00 1082.0 889 63.6
Cc09_g03080 Coffea canephora HOM05D003193 ORTHO05D004924 0.0e+00 1081.2 888 64.0
Peaxi162Scf00071g02610 Petunia axillaris HOM05D003193 ORTHO05D004924 0.0e+00 1079.7 852 64.2
Phvul.006G107000 Phaseolus vulgaris HOM05D003193 ORTHO05D004924 0.0e+00 1077.0 888 64.5
Migut.F02049 Erythranthe guttata HOM05D003193 ORTHO05D004924 0.0e+00 1075.8 891 62.1
Medtr7g116425 Medicago truncatula HOM05D003193 ORTHO05D004924 4.8e-311 1071.2 890 63.7
Sopen04g021290 Solanum pennellii HOM05D003193 ORTHO05D004924 2.3e-310 1068.9 849 63.7
VMungo0540G1922 Vigna mungo HOM05D003193 ORTHO05D004924 2.5e-309 1065.4 888 64.3
SalBow1G5750 Salvia bowleyana HOM05D003193 ORTHO05D004924 4.3e-309 1064.7 921 59.7
arahy.Tifrunner.gnm1.ann1.ZPSV32 Arachis hypogaea HOM05D003193 ORTHO05D004924 2.8e-308 1062.0 888 62.8
FAN09G1546 Fragaria x ananassa HOM05D003193 ORTHO05D004924 1.1e-307 1060.1 902 64.5
arahy.Tifrunner.gnm1.ann1.9XF1RW Arachis hypogaea HOM05D003193 ORTHO05D004924 3.1e-307 1058.5 888 62.6
ECA232G1705 Erigeron canadensis HOM05D003193 ORTHO05D004924 3.2e-304 1048.5 847 62.9
CsaV3_2G010070 Cucumis sativus L. HOM05D003193 ORTHO05D004924 9.4e-304 1047.0 886 61.1
HanXRQChr05g0145131 Helianthus annuus HOM05D003193 ORTHO05D004924 1.2e-303 1046.6 882 61.1
MELO3C008660.2 Cucumis melo HOM05D003193 ORTHO05D004924 1.4e-302 1043.1 886 61.2
THA.LOC104821587 Tarenaya hassleriana HOM05D003193 ORTHO05D004924 8.8e-302 1040.4 880 61.2
Sed0015322 Sechium edule HOM05D003193 ORTHO05D004924 4.4e-301 1038.1 886 60.4
Hund28419 Selenicereus undatus HOM05D003193 ORTHO05D004924 3.1e-299 1031.9 886 60.8
Hund28421 Selenicereus undatus HOM05D003193 ORTHO05D004924 3.1e-299 1031.9 886 60.8
ClCG11G010250 Citrullus lanatus HOM05D003193 ORTHO05D004924 7.0e-299 1030.8 886 60.8
Lsat_1_v5_gn_9_45981 Lactuca sativa HOM05D003193 ORTHO05D004924 7.7e-298 1027.3 857 61.5
EL10Ac4g09775 Beta vulgaris HOM05D003193 ORTHO05D004924 2.2e-297 1025.8 886 60.4
AT1G64790 Arabidopsis thaliana HOM05D003193 ORTHO05D004924 3.8e-297 1025.0 937 57.0
SGA_v2.0_scaffold62G21472 Striga asiatica HOM05D003193 ORTHO05D004924 5.0e-297 1024.6 918 58.6
Cpa.g.sc51.22 Carica papaya HOM05D003193 ORTHO05D004924 4.2e-296 1021.5 825 65.5
CSS0037513 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 7.2e-296 1020.8 900 62.7
DCAR_029994 Daucus carota HOM05D003193 ORTHO05D004924 2.0e-293 1012.7 902 58.6
AL2G19160 Arabidopsis lyrata HOM05D003193 ORTHO05D004924 8.2e-292 1007.3 887 58.7
SpUn0003_0310 Schrenkiella parvula HOM05D003193 ORTHO05D004924 1.4e-291 1006.5 887 58.5
CARHR056150 Cardamine hirsuta HOM05D003193 ORTHO05D004924 7.0e-291 1004.2 887 57.7
Nitab4.5_0001498g0050 Nicotiana tabacum HOM05D003193 ORTHO05D004924 1.0e-289 1000.3 922 57.8
Thhalv10022486m.g Eutrema salsugineum HOM05D003193 ORTHO05D004924 4.2e-288 995.0 887 58.5
BcaB05g23590 Brassica carinata HOM05D003193 ORTHO05D004924 4.7e-287 991.5 887 58.2
AUR62006993 Chenopodium quinoa HOM05D003193 ORTHO05D004924 4.7e-287 991.5 886 59.8
Aa31LG2G2030 Aethionema arabicum HOM05D003193 ORTHO05D004924 8.0e-287 990.7 903 57.6
BraA02t07385Z Brassica rapa HOM05D003193 ORTHO05D004924 8.0e-287 990.7 887 57.9
BolC2t09791H Brassica oleracea HOM05D003193 ORTHO05D004924 2.3e-286 989.2 899 57.5
A02p23930 Brassica napus HOM05D003193 ORTHO05D004924 3.0e-286 988.8 887 57.8
Carub.0012s0016 Capsella rubella HOM05D003193 ORTHO05D004924 1.2e-285 986.9 887 57.3
BcaC03g16020 Brassica carinata HOM05D003193 ORTHO05D004924 2.8e-284 982.2 887 57.7
C02p37720 Brassica napus HOM05D003193 ORTHO05D004924 3.5e-282 975.3 924 56.0
vmacro19973 Vaccinium macrocarpon HOM05D003193 ORTHO05D004924 2.7e-279 965.7 748 66.4
AUR62000638 Chenopodium quinoa HOM05D003193 ORTHO05D004924 1.0e-278 963.8 847 60.8
HPP92_001295 Vanilla planifolia HOM05D003193 ORTHO05D004924 5.4e-275 951.4 886 55.3
Haze_04476 Corylus avellana HOM05D003193 ORTHO05D004924 7.7e-274 947.6 692 71.0
Lj2A47G48 Lonicera japonica HOM05D003193 ORTHO05D004924 2.2e-268 929.5 715 66.9
CDE09G0882 Ceratophyllum demersum HOM05D003193 ORTHO05D004924 4.6e-250 868.6 886 54.6
Nitab4.5_0002063g0040 Nicotiana tabacum HOM05D003193 ORTHO05D004924 1.6e-226 790.4 764 56.0
Zm00001eb055550 Zea mays HOM05D003193 ORTHO05D004924 3.6e-223 779.2 743 54.4
CiPaw.07G075300 Carya illinoinensis HOM05D003193 ORTHO05D004924 2.6e-213 746.5 561 69.9
ATR0787G183 Amborella trichopoda HOM05D003193 ORTHO05D004924 4.2e-211 739.2 679 58.5
Mapoly0135s0025 Marchantia polymorpha HOM05D003193 ORTHO05D004924 1.8e-190 670.6 895 41.8
SEGI_25764 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 1.4e-182 644.4 653 52.7
Sc09g0001810 Simmondsia chinensis HOM05D003193 ORTHO05D004924 3.5e-173 613.2 537 62.2
Pp3c22_8910 Physcomitrium patens HOM05D003193 ORTHO05D004924 1.7e-164 584.3 878 40.3
unitig_37.g12281 Utricularia gibba HOM05D003193 ORTHO05D004924 1.2e-157 561.6 799 42.8
CBR_g28040 Chara braunii HOM05D003193 ORTHO05D004924 1.9e-147 527.7 910 36.4
SMO356G0295 Selaginella moellendorffii HOM05D003193 ORTHO05D004924 3.9e-132 476.9 871 37.1
Actinidia06818 Actinidia chinensis HOM05D003193 ORTHO05D004924 1.4e-126 458.4 460 55.7
AagrBONN_evm.TU.Sc2ySwM_344.2455 Anthoceros agrestis HOM05D003193 ORTHO05D004924 2.4e-105 387.9 836 31.3
MD04G1234000 Malus domestica HOM05D003193 ORTHO05D004924 2.2e-90 338.2 364 55.8
SHI15643 Sapria himalayana HOM05D003193 ORTHO05D004924 1.2e-77 295.8 306 51.3
Haze_04475 Corylus avellana HOM05D003193 ORTHO05D004924 1.8e-65 255.4 191 71.7
Os02g0538400 Oryza sativa ssp. japonica HOM05D003193 ORTHO05D004924 1.6e-48 199.1 536 29.9
Psat7g226920 Pisum sativum HOM05D003193 ORTHO05D006495 9.5e-46 189.9 166 63.9
MD04G1234100 Malus domestica HOM05D003193 ORTHO05D004924 5.7e-43 180.6 116 76.7
CSS0034895 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D016156 3.7e-42 177.9 125 68.8
ATR0787G173 Amborella trichopoda HOM05D003193 ORTHO05D004924 1.2e-40 172.9 194 49.0
Ah.02g118790 Amaranthus hybridus HOM05D003193 ORTHO05D004924 4.5e-40 171.0 192 55.7
MD04G1234200 Malus domestica HOM05D003193 ORTHO05D004924 8.0e-37 160.2 134 66.4
Cre01.g015600 Chlamydomonas reinhardtii HOM05D003193 ORTHO05D004924 5.8e-35 154.1 933 25.2
Actinidia06821 Actinidia chinensis HOM05D003193 ORTHO05D026302 2.9e-34 151.8 130 64.6
CSS0043374 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 3.7e-34 151.4 125 73.6
Lj2A47G46 Lonicera japonica HOM05D003193 ORTHO05D004924 6.0e-32 144.1 165 49.7
Actinidia26098 Actinidia chinensis HOM05D003193 ORTHO05D026302 8.6e-31 140.2 132 65.9
TAR623G0478 Trochodendron aralioides HOM05D001128 ORTHO05D000721 6.8e-28 130.6 84 91.7
vmacro19974 Vaccinium macrocarpon HOM05D003193 ORTHO05D004924 3.4e-27 128.3 133 57.9
AL2G19220 Arabidopsis lyrata HOM05D003193 ORTHO05D004924 3.5e-24 118.2 246 34.1
Actinidia11722 Actinidia chinensis HOM05D003193 ORTHO05D004924 1.3e-23 116.3 76 76.3
SHI15645 Sapria himalayana HOM05D003193 ORTHO05D004924 6.6e-23 114.0 117 47.9
Zm00001eb208170 Zea mays HOM05D003193 ORTHO05D026302 1.9e-22 112.5 124 54.8
SHI15636 Sapria himalayana HOM05D003193 ORTHO05D004924 1.6e-16 92.8 139 40.3
MD08G1086100 Malus domestica HOM05D003193 ORTHO05D004924 2.7e-16 92.0 74 56.8
Actinidia06819 Actinidia chinensis HOM05D003193 ORTHO05D026302 5.1e-15 87.8 69 65.2
SEGI_16883 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 9.5e-14 83.6 86 45.3
Nn2g11296 Nelumbo nucifera HOM05D001128 ORTHO05D000721 6.2e-13 80.9 84 56.0
RcHm_v2.0_Chr5g0043171 Rosa chinensis HOM05D003193 ORTHO05D004924 8.9e-12 77.0 58 65.5
MBI14_g02856_MAGBIO Magnolia biondii HOM05D001128 ORTHO05D000721 4.4e-11 74.7 81 53.1
TAR636G2726 Trochodendron aralioides HOM05D001128 ORTHO05D000721 9.9e-11 73.6 82 57.3
MBI05_g02674_MAGBIO Magnolia biondii HOM05D001128 ORTHO05D000721 1.7e-10 72.8 85 51.8
MD04G1165900 Malus domestica HOM05D003193 ORTHO05D005802 4.9e-10 71.2 251 27.1
Nn2g13535 Nelumbo nucifera HOM05D001128 ORTHO05D000721 8.4e-10 70.5 80 55.0
TAR369G0849 Trochodendron aralioides HOM05D001128 ORTHO05D000721 3.2e-09 68.6 76 56.6
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 3.2e-09 68.6 65 47.7
Aqoxy1G00786 Aquilegia oxysepala HOM05D001128 ORTHO05D000721 4.2e-09 68.2 76 50.0
Actinidia11721 Actinidia chinensis HOM05D003193 ORTHO05D004924 6.0e-08 64.3 65 58.5
SMO353G0297 Selaginella moellendorffii HOM05D003193 ORTHO05D374493 6.0e-08 64.3 165 31.5
Lsat_1_v5_gn_6_66841 Lactuca sativa HOM05D003193 ORTHO05D228868 1.3e-07 63.2 151 27.8
GSVIVG01034054001 Vitis vinifera HOM05D001128 ORTHO05D000721 1.3e-07 63.2 88 43.2
Psat4g179720 Pisum sativum HOM05D000104 ORTHO05D006241 2.3e-07 62.4 58 56.9
CiPaw.09G202700 Carya illinoinensis HOM05D001128 ORTHO05D000721 8.7e-07 60.5 85 42.4
Potri.010G195800 Populus trichocarpa HOM05D001128 ORTHO05D000721 1.9e-06 59.3 84 46.4
Thecc.05G027900 Theobroma cacao HOM05D001128 ORTHO05D000721 5.6e-06 57.8 86 46.5
ATR0210G013 Amborella trichopoda HOM05D001128 ORTHO05D000721 9.6e-06 57.0 82 45.1


User provided reference genes

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