Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G0177 Trochodendron aralioides HOM05D004130 ORTHO05D004705 1.3e-57 226.1 109 100.0
Dinv25573 Davidia involucrata HOM05D004130 ORTHO05D004705 1.2e-31 139.8 77 88.3
ATR0829G178 Amborella trichopoda HOM05D004130 ORTHO05D004705 2.6e-29 132.1 76 81.6
Eucgr.C00828 Eucalyptus grandis HOM05D004130 ORTHO05D004705 1.3e-28 129.8 77 81.8
TWI36G0806 Tripterygium wilfordii HOM05D004130 ORTHO05D004705 1.3e-28 129.8 76 80.3
Thecc.09G080000 Theobroma cacao HOM05D004130 ORTHO05D004705 2.2e-28 129.0 77 81.8
TWI12G1099 Tripterygium wilfordii HOM05D004130 ORTHO05D004705 2.8e-28 128.6 76 80.3
Prupe.7G202100 Prunus persica HOM05D004130 ORTHO05D004705 1.1e-27 126.7 76 78.9
MD15G1215200 Malus domestica HOM05D004130 ORTHO05D004705 2.4e-27 125.6 72 81.9
CiPaw.12G072200 Carya illinoinensis HOM05D004130 ORTHO05D004705 1.2e-26 123.2 76 78.9
COL.COLO4_18121 Corchorus olitorius HOM05D004130 ORTHO05D004705 1.6e-26 122.9 75 77.3
MBI04_g27275_MAGBIO Magnolia biondii HOM05D004130 ORTHO05D004705 1.6e-26 122.9 77 75.3
Duzib150G0272 Durio zibethinus HOM05D004130 ORTHO05D004705 2.7e-26 122.1 77 76.6
FAN28G0738 Fragaria x ananassa HOM05D004130 ORTHO05D004705 3.5e-26 121.7 75 77.3
Zm00001eb378890 Zea mays HOM05D004130 ORTHO05D004705 5.9e-26 120.9 76 78.9
Oeu046800.1 Olea europaea HOM05D004130 ORTHO05D004705 7.7e-26 120.6 77 75.3
Os03g0576600 Oryza sativa ssp. japonica HOM05D004130 ORTHO05D004705 1.0e-25 120.2 76 75.0
Sed0010064 Sechium edule HOM05D004130 ORTHO05D004705 1.0e-25 120.2 76 75.0
Gorai.007G349800 Gossypium raimondii HOM05D004130 ORTHO05D004705 2.3e-25 119.0 76 75.0
Manes.15G182400 Manihot esculenta HOM05D004130 ORTHO05D004705 2.3e-25 119.0 76 75.0
THA.LOC104814400 Tarenaya hassleriana HOM05D004130 ORTHO05D004705 2.3e-25 119.0 76 76.3
TAR375G1053 Trochodendron aralioides HOM05D004130 ORTHO05D004705 2.3e-25 119.0 76 73.7
ClCG10G000940 Citrullus lanatus HOM05D004130 ORTHO05D004705 2.9e-25 118.6 76 72.4
CsaV3_3G001010 Cucumis sativus L. HOM05D004130 ORTHO05D004705 2.9e-25 118.6 76 75.0
FvH4_1g08340 Fragaria vesca HOM05D004130 ORTHO05D004705 2.9e-25 118.6 75 76.0
FAN19G1377 Fragaria x ananassa HOM05D004130 ORTHO05D004705 2.9e-25 118.6 75 76.0
FAN23G0613 Fragaria x ananassa HOM05D004130 ORTHO05D004705 2.9e-25 118.6 75 74.7
Nn1g02053 Nelumbo nucifera HOM05D004130 ORTHO05D004705 2.9e-25 118.6 76 73.7
GSVIVG01015105001 Vitis vinifera HOM05D004130 ORTHO05D004705 2.9e-25 118.6 67 86.6
Zm00001eb415460 Zea mays HOM05D004130 ORTHO05D004705 2.9e-25 118.6 76 75.0
THA.LOC104798518 Tarenaya hassleriana HOM05D004130 ORTHO05D004705 3.8e-25 118.2 76 73.7
Aqoxy7G01323 Aquilegia oxysepala HOM05D004130 ORTHO05D004705 5.0e-25 117.9 76 75.0
Gohir.D11G319700 Gossypium hirsutum HOM05D004130 ORTHO05D004705 5.0e-25 117.9 76 75.0
QL12p001893 Quercus lobata HOM05D004130 ORTHO05D004705 5.0e-25 117.9 76 73.7
MELO3C031937.2 Cucumis melo HOM05D004130 ORTHO05D004705 6.5e-25 117.5 76 73.7
Nn3g19256 Nelumbo nucifera HOM05D004130 ORTHO05D004705 6.5e-25 117.5 76 73.7
Prupe.5G019500 Prunus persica HOM05D004130 ORTHO05D004705 6.5e-25 117.5 76 73.7
Rhsim11G0034100 Rhododendron simsii HOM05D004130 ORTHO05D004705 6.5e-25 117.5 77 72.7
Actinidia01260 Actinidia chinensis HOM05D004130 ORTHO05D004705 8.6e-25 117.1 76 73.7
COL.COLO4_37232 Corchorus olitorius HOM05D004130 ORTHO05D004705 8.6e-25 117.1 76 73.7
Os06g0115300 Oryza sativa ssp. japonica HOM05D004130 ORTHO05D004705 8.6e-25 117.1 76 76.3
Os08g0162800 Oryza sativa ssp. japonica HOM05D004130 ORTHO05D004705 8.6e-25 117.1 76 73.7
PGR031G3679 Punica granatum HOM05D004130 ORTHO05D004705 8.6e-25 117.1 76 75.0
PGR067G0004 Punica granatum HOM05D004130 ORTHO05D004705 8.6e-25 117.1 76 75.0
Aqoxy4G02079 Aquilegia oxysepala HOM05D004130 ORTHO05D004705 1.1e-24 116.7 74 75.7
MD00G1002100 Malus domestica HOM05D004130 ORTHO05D004705 1.1e-24 116.7 76 73.7
Ciclev10002973m.g Citrus clementina HOM05D004130 ORTHO05D004705 1.5e-24 116.3 74 74.3
Dinv41817 Davidia involucrata HOM05D004130 ORTHO05D004705 1.5e-24 116.3 76 73.7
Duzib106G0486 Durio zibethinus HOM05D004130 ORTHO05D004705 1.5e-24 116.3 76 73.7
Glyma.04G122900 Glycine max HOM05D004130 ORTHO05D004705 1.5e-24 116.3 74 74.3
CiPaw.11G103700 Carya illinoinensis HOM05D004130 ORTHO05D004705 1.9e-24 115.9 76 73.7
Migut.E01354 Erythranthe guttata HOM05D004130 ORTHO05D004705 1.9e-24 115.9 77 74.0
Manes.17G006800 Manihot esculenta HOM05D004130 ORTHO05D004705 1.9e-24 115.9 76 71.1
Peaxi162Scf00193g00214 Petunia axillaris HOM05D004130 ORTHO05D004705 1.9e-24 115.9 76 72.4
vmacro00053 Vaccinium macrocarpon HOM05D004130 ORTHO05D004705 1.9e-24 115.9 76 72.4
DCAR_030897 Daucus carota HOM05D004130 ORTHO05D004705 2.5e-24 115.5 75 73.3
arahy.Tifrunner.gnm1.ann1.DIJ3RT Arachis hypogaea HOM05D004130 ORTHO05D004705 3.3e-24 115.2 74 73.0
arahy.Tifrunner.gnm1.ann1.X5SRIL Arachis hypogaea HOM05D004130 ORTHO05D004705 3.3e-24 115.2 74 73.0
CDE02G3877 Ceratophyllum demersum HOM05D004130 ORTHO05D004705 3.3e-24 115.2 76 72.4
Lsat_1_v5_gn_3_23340 Lactuca sativa HOM05D004130 ORTHO05D004705 3.3e-24 115.2 77 71.4
Lj2g0015830 Lotus japonicus HOM05D004130 ORTHO05D004705 3.3e-24 115.2 75 72.0
Sabra01G0100700 Salix brachista HOM05D004130 ORTHO05D004705 3.3e-24 115.2 76 72.4
CDE11G1231 Ceratophyllum demersum HOM05D004130 ORTHO05D004705 4.2e-24 114.8 76 71.1
Dinv37412 Davidia involucrata HOM05D004130 ORTHO05D004705 4.2e-24 114.8 76 71.1
Potri.003G103700 Populus trichocarpa HOM05D004130 ORTHO05D004705 4.2e-24 114.8 76 72.4
GSVIVG01022804001 Vitis vinifera HOM05D004130 ORTHO05D004705 4.2e-24 114.8 76 73.7
Actinidia14738 Actinidia chinensis HOM05D004130 ORTHO05D004705 5.5e-24 114.4 76 72.4
DCAR_006311 Daucus carota HOM05D004130 ORTHO05D004705 5.5e-24 114.4 75 72.0
Potri.001G130200 Populus trichocarpa HOM05D004130 ORTHO05D004705 5.5e-24 114.4 76 72.4
Thecc.03G325000 Theobroma cacao HOM05D004130 ORTHO05D004705 5.5e-24 114.4 76 72.4
Atru.chr7.1674 Acer truncatum HOM05D004130 ORTHO05D004705 7.2e-24 114.0 71 74.6
CSS0014160 Camellia sinensis var. sinensis HOM05D004130 ORTHO05D004705 7.2e-24 114.0 76 71.1
Lalb_Chr05g0215391 Lupinus albus HOM05D004130 ORTHO05D004705 7.2e-24 114.0 75 73.3
Nitab4.5_0000030g0220 Nicotiana tabacum HOM05D004130 ORTHO05D004705 7.2e-24 114.0 77 74.0
CSS0012724 Camellia sinensis var. sinensis HOM05D004130 ORTHO05D004705 9.5e-24 113.6 76 69.7
CSS0035325 Camellia sinensis var. sinensis HOM05D004130 ORTHO05D004705 9.5e-24 113.6 76 69.7
Glyma.09G214500 Glycine max HOM05D004130 ORTHO05D004705 9.5e-24 113.6 74 73.0
Lalb_Chr16g0380701 Lupinus albus HOM05D004130 ORTHO05D004705 9.5e-24 113.6 75 70.7
Sopen08g024340 Solanum pennellii HOM05D004130 ORTHO05D004705 1.2e-23 113.2 76 71.1
Cpa.g.c33773 Carica papaya HOM05D004130 ORTHO05D004705 1.6e-23 112.8 76 71.1
FvH4_5g24090 Fragaria vesca HOM05D004130 ORTHO05D004705 1.6e-23 112.8 77 71.4
FAN18G1566 Fragaria x ananassa HOM05D004130 ORTHO05D004705 1.6e-23 112.8 77 71.4
FAN18G3743 Fragaria x ananassa HOM05D004130 ORTHO05D004705 1.6e-23 112.8 77 71.4
Gohir.A07G014450 Gossypium hirsutum HOM05D004130 ORTHO05D004705 1.6e-23 112.8 70 75.7
Nitab4.5_0001023g0180 Nicotiana tabacum HOM05D004130 ORTHO05D004705 1.6e-23 112.8 77 72.7
Cc00_g07460 Coffea canephora HOM05D004130 ORTHO05D004705 2.1e-23 112.5 75 72.0
Gohir.D07G014100 Gossypium hirsutum HOM05D004130 ORTHO05D004705 2.1e-23 112.5 69 75.4
Gorai.001G014900 Gossypium raimondii HOM05D004130 ORTHO05D004705 2.1e-23 112.5 69 75.4
PGR042G1275 Punica granatum HOM05D004130 ORTHO05D004705 2.1e-23 112.5 76 71.1
CAN.G800.12 Capsicum annuum HOM05D004130 ORTHO05D004705 2.8e-23 112.1 76 71.1
FAN26G2855 Fragaria x ananassa HOM05D003252 ORTHO05D003640 2.8e-23 112.1 66 80.3
Mapoly0146s0043 Marchantia polymorpha HOM05D004130 ORTHO05D004705 2.8e-23 112.1 73 74.0
Solyc08g075690.3 Solanum lycopersicum HOM05D004130 ORTHO05D004705 2.8e-23 112.1 76 69.7
Gohir.D11G319800 Gossypium hirsutum HOM05D004130 ORTHO05D004705 3.6e-23 111.7 76 71.1
Gorai.007G349900 Gossypium raimondii HOM05D004130 ORTHO05D004705 3.6e-23 111.7 76 71.1
PGSC0003DMG400030867 Solanum tuberosum HOM05D004130 ORTHO05D004705 3.6e-23 111.7 76 69.7
Eucgr.E01218 Eucalyptus grandis HOM05D004130 ORTHO05D004705 4.7e-23 111.3 74 71.6
SalBow8G1427 Salvia bowleyana HOM05D004130 ORTHO05D004705 4.7e-23 111.3 76 68.4
ECA246G1091 Erigeron canadensis HOM05D004130 ORTHO05D004705 6.1e-23 110.9 76 69.7
FAN04G1172 Fragaria x ananassa HOM05D004130 ORTHO05D004705 6.1e-23 110.9 77 70.1
FAN13G0805 Fragaria x ananassa HOM05D004130 ORTHO05D004705 6.1e-23 110.9 77 70.1
ECA240G1912 Erigeron canadensis HOM05D000302 ORTHO05D000334 1.0e-22 110.2 74 73.0
HanXRQChr17g0537111 Helianthus annuus HOM05D004130 ORTHO05D004705 1.0e-22 110.2 76 72.4
Sabra03G0070800 Salix brachista HOM05D004130 ORTHO05D004705 1.0e-22 110.2 76 68.4
Atru.chr6.2108 Acer truncatum HOM05D004130 ORTHO05D004705 1.4e-22 109.8 75 68.0
Hma1.2p1_1873F.1_g306170 Hydrangea macrophylla HOM05D004130 ORTHO05D004705 1.4e-22 109.8 74 68.9
MD06G1017000 Malus domestica HOM05D004130 ORTHO05D004705 1.4e-22 109.8 76 68.4
Phvul.002G127700 Phaseolus vulgaris HOM05D004130 ORTHO05D004705 1.4e-22 109.8 74 70.3
RcHm_v2.0_Chr7g0213621 Rosa chinensis HOM05D004130 ORTHO05D004705 1.4e-22 109.8 74 70.3
TAR374G0121 Trochodendron aralioides HOM05D004130 ORTHO05D004705 1.4e-22 109.8 72 72.2
C05p31030 Brassica napus HOM05D004130 ORTHO05D004705 2.3e-22 109.0 76 71.1
Ca_25095_v3 Cicer arietinum L. HOM05D004130 ORTHO05D004705 4.0e-22 108.2 74 70.3
Ca_30395_v3 Cicer arietinum L. HOM05D004130 ORTHO05D004705 4.0e-22 108.2 74 70.3
Gohir.A11G304400 Gossypium hirsutum HOM05D004130 ORTHO05D004705 4.0e-22 108.2 76 68.4
Sp1g27510 Schrenkiella parvula HOM05D004130 ORTHO05D004705 5.2e-22 107.8 77 68.8
CARHR031130 Cardamine hirsuta HOM05D004130 ORTHO05D004705 6.8e-22 107.5 77 68.8
BcaC05g27197 Brassica carinata HOM05D004130 ORTHO05D004705 1.2e-21 106.7 76 69.7
BolC5t31827H Brassica oleracea HOM05D004130 ORTHO05D004705 1.2e-21 106.7 76 69.7
CANSAT21G0569 Cannabis sativa HOM05D004130 ORTHO05D004705 2.0e-21 105.9 76 67.1
Medtr5g026740 Medicago truncatula HOM05D004130 ORTHO05D004705 2.0e-21 105.9 74 68.9
BraA09t38994Z Brassica rapa HOM05D004130 ORTHO05D004705 2.6e-21 105.5 76 68.4
PSO063G4979 Papaver somniferum HOM05D004130 ORTHO05D004705 3.4e-21 105.1 74 68.9
PSO782G2341 Papaver somniferum HOM05D004130 ORTHO05D004705 3.4e-21 105.1 74 68.9
BraA08t33038Z Brassica rapa HOM05D004130 ORTHO05D004705 4.4e-21 104.8 74 70.3
BcaB03g13788 Brassica carinata HOM05D004130 ORTHO05D004705 5.7e-21 104.4 76 67.1
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 5.7e-21 104.4 76 67.1
A05p25500 Brassica napus HOM05D004130 ORTHO05D004705 5.7e-21 104.4 76 67.1
C05p39640 Brassica napus HOM05D004130 ORTHO05D004705 5.7e-21 104.4 76 67.1
BolC5t32704H Brassica oleracea HOM05D004130 ORTHO05D004705 5.7e-21 104.4 76 67.1
BraA05t21434Z Brassica rapa HOM05D004130 ORTHO05D004705 5.7e-21 104.4 76 67.1
SGA_v2.0_scaffold144G35883 Striga asiatica HOM05D003598 ORTHO05D004198 5.7e-21 104.4 74 67.6
TPR.G17251 Trifolium pratense HOM05D004130 ORTHO05D004705 7.5e-21 104.0 74 67.6
BcaB07g32828 Brassica carinata HOM05D004130 ORTHO05D004705 9.8e-21 103.6 76 67.1
Psat0s1441g0080 Pisum sativum HOM05D000032 ORTHO05D004705 9.8e-21 103.6 74 67.6
Psat2g143680 Pisum sativum HOM05D004130 ORTHO05D004705 9.8e-21 103.6 74 67.6
SEGI_06410 Sequoiadendron giganteum HOM05D004130 ORTHO05D004705 1.3e-20 103.2 66 72.7
Sc01g0007080 Simmondsia chinensis HOM05D004130 ORTHO05D004705 1.3e-20 103.2 74 68.9
AagrBONN_evm.TU.Sc2ySwM_344.2271 Anthoceros agrestis HOM05D004130 ORTHO05D004705 1.7e-20 102.8 72 66.7
Aqoxy4G01989 Aquilegia oxysepala HOM05D004130 ORTHO05D004705 1.7e-20 102.8 73 68.5
Aa31LG2G14240 Aethionema arabicum HOM05D004130 ORTHO05D004705 2.8e-20 102.1 76 64.5
AUR62007416 Chenopodium quinoa HOM05D004130 ORTHO05D004705 2.8e-20 102.1 74 67.6
AT1G31812 Arabidopsis thaliana HOM05D004130 ORTHO05D004705 8.3e-20 100.5 76 64.5
BcaC07g37723 Brassica carinata HOM05D004130 ORTHO05D004705 1.1e-19 100.1 74 66.2
BolC8t48106H Brassica oleracea HOM05D004130 ORTHO05D004705 1.1e-19 100.1 74 66.2
SMO340G0182 Selaginella moellendorffii HOM05D004130 ORTHO05D004705 1.1e-19 100.1 75 64.0
unitig_32.g11633 Utricularia gibba HOM05D004130 ORTHO05D004705 1.1e-19 100.1 74 63.5
MSTRG.11879 Avicennia marina HOM05D004130 ORTHO05D004705 1.4e-19 99.8 76 63.2
AL1G45890 Arabidopsis lyrata HOM05D004130 ORTHO05D004705 1.8e-19 99.4 76 64.5
Hund11098 Selenicereus undatus HOM05D004130 ORTHO05D004705 1.8e-19 99.4 74 64.9
Ah.12g056050 Amaranthus hybridus HOM05D004130 ORTHO05D004705 2.4e-19 99.0 74 66.2
Carub.0001s3012 Capsella rubella HOM05D004130 ORTHO05D004705 4.1e-19 98.2 76 61.8
AUR62027316 Chenopodium quinoa HOM05D004130 ORTHO05D004705 4.1e-19 98.2 74 64.9
Haze_25978 Corylus avellana HOM05D003252 ORTHO05D003640 5.4e-19 97.8 52 84.6
Thhalv10009206m.g Eutrema salsugineum HOM05D004130 ORTHO05D004705 9.2e-19 97.1 76 63.2
EL10Ac5g11913 Beta vulgaris HOM05D004130 ORTHO05D004705 2.7e-18 95.5 74 63.5
Rhsim11G0034000 Rhododendron simsii HOM05D004130 ORTHO05D004705 8.6e-17 90.5 79 64.6
BolC5t32707H Brassica oleracea HOM05D004130 ORTHO05D004705 1.9e-16 89.4 73 63.0
CBR_g18879 Chara braunii HOM05D004130 ORTHO05D004705 1.4e-14 83.2 66 60.6
Pp3c14_11470 Physcomitrium patens HOM05D004130 ORTHO05D004705 2.3e-14 82.4 73 57.5
Gohir.A11G304300 Gossypium hirsutum HOM05D004130 ORTHO05D004705 6.8e-14 80.9 57 66.7
Pp3c2_5450 Physcomitrium patens HOM05D004130 ORTHO05D004705 1.5e-13 79.7 72 56.9
Cre02.g118850 Chlamydomonas reinhardtii HOM05D004130 ORTHO05D004705 3.4e-13 78.6 78 50.0
CSS0007814 Camellia sinensis var. sinensis HOM05D004130 ORTHO05D004705 4.4e-13 78.2 51 68.6
PRCOL_00007032 Prasinoderma coloniale HOM05D004130 ORTHO05D004705 7.5e-13 77.4 73 49.3
Psat2g138640 Pisum sativum HOM05D011477 ORTHO05D004705 2.2e-12 75.9 54 64.8
FAN26G3461 Fragaria x ananassa HOM05D003252 ORTHO05D003640 2.9e-12 75.5 66 62.1
Actinidia32778 Actinidia chinensis HOM05D004130 ORTHO05D004705 6.4e-12 74.3 54 68.5
MD02G1087600 Malus domestica HOM05D004130 ORTHO05D004705 1.4e-11 73.2 49 75.5
MCO11G819 Micromonas commoda HOM05D004130 ORTHO05D004705 1.6e-10 69.7 71 46.5
A08p10380 Brassica napus HOM05D004130 ORTHO05D004705 7.8e-10 67.4 41 78.0
A09p34530 Brassica napus HOM05D004130 ORTHO05D004705 7.8e-10 67.4 41 78.0
C05p40370 Brassica napus HOM05D004130 ORTHO05D004705 1.9e-08 62.8 41 70.7
BolC5t32777H Brassica oleracea HOM05D004130 ORTHO05D004705 1.9e-08 62.8 41 70.7
Haze_08042 Corylus avellana HOM05D004130 ORTHO05D004705 2.5e-08 62.4 76 48.7
Haze_08052 Corylus avellana HOM05D004130 ORTHO05D004705 2.5e-08 62.4 76 48.7
Cre14.g627800 Chlamydomonas reinhardtii HOM05D001964 ORTHO05D001879 4.3e-08 61.6 91 42.9
Haze_27157 Corylus avellana HOM05D004130 ORTHO05D004705 1.2e-07 60.1 56 46.4
CBR_g39376 Chara braunii HOM05D001964 ORTHO05D001879 6.2e-07 57.8 51 51.0
Pp3c11_3750 Physcomitrium patens HOM05D001964 ORTHO05D001879 1.8e-06 56.2 59 42.4
Aa31LG7G10270 Aethionema arabicum HOM05D001964 ORTHO05D001879 4.0e-06 55.1 91 36.3
CARHR231650 Cardamine hirsuta HOM05D001964 ORTHO05D001879 4.0e-06 55.1 91 36.3
Nn1g00319 Nelumbo nucifera HOM05D001964 ORTHO05D001879 5.2e-06 54.7 57 49.1
BcaC06g32902 Brassica carinata HOM05D001964 ORTHO05D001879 6.8e-06 54.3 91 36.3
MBI05_g04121_MAGBIO Magnolia biondii HOM05D001811 ORTHO05D001738 6.8e-06 54.3 53 52.8
ATR0598G056 Amborella trichopoda HOM05D004130 ORTHO05D004705 8.9e-06 53.9 31 80.6


User provided reference genes

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