Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 4.6e-129 464.5 231 100.0
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 5.4e-85 318.2 230 71.3
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.0e-83 313.9 217 76.5
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 2.1e-81 306.2 231 68.8
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 2.6e-79 299.3 232 67.7
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 5.7e-79 298.1 233 66.5
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 7.8e-76 287.7 230 63.0
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 1.0e-75 287.3 230 65.2
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 1.3e-75 287.0 229 66.4
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 2.3e-75 286.2 231 63.6
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 2.9e-75 285.8 230 63.9
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 2.9e-75 285.8 224 64.7
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 5.0e-75 285.0 232 64.2
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 8.6e-75 284.3 231 63.6
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 1.1e-74 283.9 228 67.5
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 3.3e-74 282.3 224 63.8
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 4.3e-74 282.0 224 64.3
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 1.2e-73 280.4 224 63.4
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 1.6e-73 280.0 231 62.8
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 2.1e-73 279.6 230 62.6
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 1.8e-72 276.6 230 63.9
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 5.2e-72 275.0 240 59.2
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 1.5e-71 273.5 230 61.3
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 2.0e-71 273.1 231 61.9
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 3.4e-71 272.3 230 61.7
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 9.8e-71 270.8 225 62.7
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.2e-70 269.6 225 62.2
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 1.4e-69 266.9 238 61.3
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 1.2e-68 263.8 234 59.0
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.6e-68 263.5 203 66.5
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 1.6e-68 263.5 233 59.2
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 4.6e-68 261.9 224 62.5
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 6.0e-68 261.5 227 62.6
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 6.0e-68 261.5 203 65.5
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 6.0e-68 261.5 203 65.5
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 7.8e-68 261.2 184 73.9
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 1.0e-67 260.8 231 60.2
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 3.0e-67 259.2 230 60.4
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 3.0e-67 259.2 244 57.8
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.0e-67 259.2 224 62.1
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 3.0e-67 259.2 235 58.3
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 5.0e-67 258.5 187 71.7
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 6.6e-67 258.1 226 61.9
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 8.6e-67 257.7 222 61.7
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 8.6e-67 257.7 224 61.6
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 1.1e-66 257.3 225 63.1
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 2.5e-66 256.1 225 61.3
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 4.3e-66 255.4 225 61.3
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 4.3e-66 255.4 226 61.5
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 4.3e-66 255.4 232 60.8
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 4.3e-66 255.4 176 75.6
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 5.6e-66 255.0 235 58.7
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 5.6e-66 255.0 241 58.1
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 8.0e-65 251.1 202 67.8
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 8.0e-65 251.1 234 58.5
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 8.0e-65 251.1 217 61.8
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 4.0e-64 248.8 195 66.2
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 6.8e-64 248.1 230 59.1
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 6.8e-64 248.1 188 68.1
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 8.9e-64 247.7 313 47.0
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 8.9e-64 247.7 230 56.1
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 1.2e-63 247.3 233 58.4
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 1.2e-63 247.3 233 59.7
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 1.5e-63 246.9 225 60.9
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 1.5e-63 246.9 225 60.9
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 2.6e-63 246.1 222 59.9
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 4.4e-63 245.4 231 59.3
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 5.8e-63 245.0 246 56.1
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 7.5e-63 244.6 229 59.4
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 9.8e-63 244.2 231 59.3
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.7e-62 243.4 230 58.3
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 2.2e-62 243.0 233 58.8
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 2.2e-62 243.0 227 59.9
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 8.3e-62 241.1 225 60.9
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 1.4e-61 240.4 233 57.5
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 1.6e-60 236.9 216 60.6
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 2.7e-60 236.1 227 58.6
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 1.3e-59 233.8 218 59.6
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 1.7e-59 233.4 202 61.9
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 8.6e-59 231.1 274 50.7
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 8.6e-59 231.1 230 57.8
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 1.5e-58 230.3 218 57.3
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 1.9e-58 229.9 233 57.9
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 2.5e-58 229.6 209 61.7
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 7.3e-58 228.0 174 67.2
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 9.5e-58 227.6 231 55.8
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 9.5e-58 227.6 146 76.7
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 8.1e-57 224.6 326 44.5
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 8.1e-57 224.6 224 56.2
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 1.2e-55 220.7 231 53.7
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 2.6e-55 219.5 203 61.6
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 4.4e-55 218.8 251 51.8
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 9.9e-55 217.6 238 52.9
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.3e-54 217.2 214 57.0
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 1.3e-54 217.2 225 54.2
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 1.7e-54 216.9 198 61.6
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 3.7e-54 215.7 232 55.6
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 3.7e-54 215.7 226 55.3
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 6.4e-54 214.9 227 55.5
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 1.1e-53 214.2 212 56.6
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 1.1e-53 214.2 232 54.7
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 3.2e-53 212.6 221 55.7
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 4.1e-53 212.2 195 59.5
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 9.2e-53 211.1 239 53.6
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 1.2e-52 210.7 228 53.9
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 1.6e-52 210.3 207 59.9
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 3.5e-52 209.1 212 55.7
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 7.8e-52 208.0 236 53.8
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 5.1e-51 205.3 204 58.3
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 7.3e-50 201.4 187 61.0
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 3.6e-49 199.1 225 52.9
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 4.7e-49 198.7 239 50.6
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 8.1e-49 198.0 201 57.7
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 8.1e-49 198.0 232 50.4
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 8.1e-49 198.0 210 52.4
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 1.1e-48 197.6 194 55.7
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 1.1e-48 197.6 192 56.2
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 8.9e-48 194.5 224 53.6
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 2.6e-47 193.0 196 56.1
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 4.4e-47 192.2 203 55.2
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 7.6e-47 191.4 244 50.4
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 1.3e-46 190.7 243 50.6
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 2.2e-46 189.9 206 55.3
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 6.4e-46 188.3 193 57.0
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 6.4e-46 188.3 232 49.6
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 1.9e-45 186.8 257 46.3
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 4.2e-45 185.7 205 52.2
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 5.4e-45 185.3 219 52.1
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 1.2e-44 184.1 234 49.1
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 4.6e-44 182.2 203 52.2
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 1.7e-43 180.3 193 54.9
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 2.3e-43 179.9 207 51.7
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 3.0e-43 179.5 213 51.2
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 6.6e-43 178.3 213 50.7
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 6.6e-43 178.3 213 50.7
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 1.9e-42 176.8 212 50.5
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 4.3e-42 175.6 206 51.5
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 5.6e-42 175.3 238 48.7
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 7.3e-42 174.9 125 72.0
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 2.8e-41 172.9 151 62.9
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 6.2e-41 171.8 182 50.0
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 1.4e-40 170.6 135 65.2
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 1.8e-40 170.2 218 47.7
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 2.0e-39 166.8 207 48.8
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 5.8e-39 165.2 120 69.2
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 1.7e-38 163.7 117 70.9
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 2.2e-38 163.3 115 65.2
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 1.9e-37 160.2 192 52.1
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 1.2e-36 157.5 104 70.2
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 2.1e-36 156.8 203 47.3
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 4.5e-31 139.0 122 56.6
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 9.9e-31 137.9 229 42.8
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 6.4e-30 135.2 85 74.1
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 6.4e-30 135.2 85 74.1
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 8.4e-30 134.8 155 53.5
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 1.6e-28 130.6 188 45.7
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 2.5e-26 123.2 137 50.4
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 2.1e-25 120.2 86 66.3
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 3.7e-25 119.4 81 69.1
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 4.8e-25 119.0 219 38.8
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 1.1e-24 117.9 165 47.9
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 2.4e-24 116.7 157 46.5
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 3.4e-15 86.3 85 47.1
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 6.7e-11 72.0 79 46.8
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 8.7e-11 71.6 40 80.0
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 6.3e-09 65.5 96 40.6
HanXRQChr12g0358981 Helianthus annuus HOM05D004056 ORTHO05D004894 9.0e-08 61.6 43 65.1


User provided reference genes

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