Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G0147 Trochodendron aralioides HOM05D004738 ORTHO05D051490 8.0e-108 393.7 185 100.0
TAR636G3653 Trochodendron aralioides HOM05D004738 ORTHO05D051490 3.4e-106 388.3 185 98.9
PGR102G2550 Punica granatum HOM05D004738 ORTHO05D006439 1.9e-40 169.9 164 48.2
Actinidia08828 Actinidia chinensis HOM05D004738 ORTHO05D006439 2.5e-40 169.5 164 47.0
Rhsim12G0195800 Rhododendron simsii HOM05D004738 ORTHO05D006439 4.2e-40 168.7 164 48.2
Migut.I00837 Erythranthe guttata HOM05D004738 ORTHO05D006439 5.5e-40 168.3 164 47.6
A07p26650 Brassica napus HOM05D004738 ORTHO05D006439 7.2e-40 167.9 164 46.3
BraA07t30308Z Brassica rapa HOM05D004738 ORTHO05D006439 7.2e-40 167.9 164 46.3
ClCG09G002360 Citrullus lanatus HOM05D004738 ORTHO05D006439 9.4e-40 167.5 175 45.1
Dinv30535 Davidia involucrata HOM05D004738 ORTHO05D006439 9.4e-40 167.5 164 47.6
FAN05G5687 Fragaria x ananassa HOM05D004738 ORTHO05D006439 9.4e-40 167.5 164 47.0
CDE06G1313 Ceratophyllum demersum HOM05D004738 ORTHO05D006439 1.2e-39 167.2 165 45.5
FvH4_6g30840 Fragaria vesca HOM05D004738 ORTHO05D006439 1.2e-39 167.2 164 46.3
BraA07t32032Z Brassica rapa HOM05D004738 ORTHO05D006439 1.6e-39 166.8 162 46.3
CiPaw.02G152800 Carya illinoinensis HOM05D004738 ORTHO05D006439 1.6e-39 166.8 164 46.3
MELO3C023371.2 Cucumis melo HOM05D004738 ORTHO05D006439 1.6e-39 166.8 175 45.1
Nn2g11846 Nelumbo nucifera HOM05D004738 ORTHO05D006439 1.6e-39 166.8 164 46.3
Potri.003G058500 Populus trichocarpa HOM05D004738 ORTHO05D006439 1.6e-39 166.8 164 47.0
QL05p025470 Quercus lobata HOM05D004738 ORTHO05D006439 1.6e-39 166.8 164 48.2
Sed0002572 Sechium edule HOM05D004738 ORTHO05D006439 1.6e-39 166.8 163 47.2
BcaC08g45309 Brassica carinata HOM05D004738 ORTHO05D006439 2.1e-39 166.4 164 45.7
C06p29130 Brassica napus HOM05D004738 ORTHO05D006439 2.1e-39 166.4 164 45.7
BolC6t38077H Brassica oleracea HOM05D004738 ORTHO05D006439 2.1e-39 166.4 164 45.7
AL2G41120 Arabidopsis lyrata HOM05D004738 ORTHO05D006439 2.7e-39 166.0 164 46.3
BcaB02g07276 Brassica carinata HOM05D004738 ORTHO05D006439 2.7e-39 166.0 164 45.1
CSS0005409 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 2.7e-39 166.0 164 46.3
AUR62011604 Chenopodium quinoa HOM05D004738 ORTHO05D006439 2.7e-39 166.0 164 47.0
Duzib235G1168 Durio zibethinus HOM05D004738 ORTHO05D006439 2.7e-39 166.0 164 45.7
Prupe.3G075100 Prunus persica HOM05D004738 ORTHO05D006439 2.7e-39 166.0 164 45.7
HPP92_011481 Vanilla planifolia HOM05D004738 ORTHO05D006439 2.7e-39 166.0 162 47.5
Eucgr.F02574 Eucalyptus grandis HOM05D004738 ORTHO05D006439 3.6e-39 165.6 164 47.0
FAN02G1331 Fragaria x ananassa HOM05D004738 ORTHO05D006439 3.6e-39 165.6 164 46.3
FAN09G3531 Fragaria x ananassa HOM05D004738 ORTHO05D006439 3.6e-39 165.6 164 46.3
TPR.G37250 Trifolium pratense HOM05D004738 ORTHO05D006439 3.6e-39 165.6 163 46.6
Lj9A505T66 Lonicera japonica HOM05D004738 ORTHO05D006439 4.6e-39 165.2 164 46.3
VMungo1080G0347 Vigna mungo HOM05D004738 ORTHO05D006439 4.6e-39 165.2 163 46.6
COL.COLO4_02957 Corchorus olitorius HOM05D004738 ORTHO05D006439 6.1e-39 164.9 164 45.7
Glyma.15G012500 Glycine max HOM05D004738 ORTHO05D006439 6.1e-39 164.9 163 46.0
arahy.Tifrunner.gnm1.ann1.2F1L5Z Arachis hypogaea HOM05D004738 ORTHO05D006439 7.9e-39 164.5 163 47.2
BcaC08g47585 Brassica carinata HOM05D004738 ORTHO05D006439 7.9e-39 164.5 161 46.0
C06p54140 Brassica napus HOM05D004738 ORTHO05D006439 7.9e-39 164.5 161 46.0
BolC6t40426H Brassica oleracea HOM05D004738 ORTHO05D006439 7.9e-39 164.5 161 46.0
CsaV3_7G032950 Cucumis sativus L. HOM05D004738 ORTHO05D006439 7.9e-39 164.5 164 46.3
Thhalv10018540m.g Eutrema salsugineum HOM05D004738 ORTHO05D006439 7.9e-39 164.5 162 46.3
Cpa.g.sc10.174 Carica papaya HOM05D004738 ORTHO05D006439 1.0e-38 164.1 177 45.2
MSTRG.11096 Avicennia marina HOM05D004738 ORTHO05D006439 1.4e-38 163.7 164 45.7
Carub.0002s2719 Capsella rubella HOM05D004738 ORTHO05D006439 1.4e-38 163.7 164 45.1
Nn8g39296 Nelumbo nucifera HOM05D004738 ORTHO05D006439 1.4e-38 163.7 164 47.0
Sabra03G0032700 Salix brachista HOM05D004738 ORTHO05D006439 1.4e-38 163.7 164 45.7
TWI12G0818 Tripterygium wilfordii HOM05D004738 ORTHO05D006439 1.4e-38 163.7 164 43.3
A07p45280 Brassica napus HOM05D004738 ORTHO05D006439 1.8e-38 163.3 162 45.7
Lsat_1_v5_gn_1_34140 Lactuca sativa HOM05D004738 ORTHO05D006439 1.8e-38 163.3 164 45.1
Thecc.06G081700 Theobroma cacao HOM05D004738 ORTHO05D006439 1.8e-38 163.3 164 45.7
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 1.8e-38 163.3 164 44.5
GSVIVG01017163001 Vitis vinifera HOM05D004738 ORTHO05D006439 1.8e-38 163.3 164 45.1
BcaB02g08689 Brassica carinata HOM05D004738 ORTHO05D006439 2.3e-38 162.9 162 45.7
MBI01_g13569_MAGBIO Magnolia biondii HOM05D004738 ORTHO05D006439 2.3e-38 162.9 164 46.3
Medtr2g102510 Medicago truncatula HOM05D004738 ORTHO05D006439 2.3e-38 162.9 163 46.0
Nitab4.5_0002424g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 2.3e-38 162.9 177 44.1
Aqoxy7G03780 Aquilegia oxysepala HOM05D004738 ORTHO05D006439 3.0e-38 162.5 164 44.5
BcaB05g25272 Brassica carinata HOM05D004738 ORTHO05D006439 3.0e-38 162.5 164 44.5
Sp5g35430 Schrenkiella parvula HOM05D004738 ORTHO05D006439 3.0e-38 162.5 162 45.1
Os01g0682500 Oryza sativa ssp. japonica HOM05D004738 ORTHO05D006439 3.9e-38 162.2 164 45.1
RcHm_v2.0_Chr2g0137281 Rosa chinensis HOM05D004738 ORTHO05D006439 3.9e-38 162.2 164 45.7
PGSC0003DMG400002559 Solanum tuberosum HOM05D004738 ORTHO05D006439 3.9e-38 162.2 164 45.1
SGA_v2.0_scaffold37G14802 Striga asiatica HOM05D004738 ORTHO05D006439 3.9e-38 162.2 164 45.1
ECA247G3808 Erigeron canadensis HOM05D004738 ORTHO05D006439 5.1e-38 161.8 164 45.7
Glyma.13G361400 Glycine max HOM05D004738 ORTHO05D006439 5.1e-38 161.8 163 45.4
Gohir.A02G122900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 5.1e-38 161.8 164 45.1
vmacro16939 Vaccinium macrocarpon HOM05D004738 ORTHO05D006439 5.1e-38 161.8 164 45.7
Zm00001eb267390 Zea mays HOM05D004738 ORTHO05D006439 5.1e-38 161.8 165 45.5
A02p23600 Brassica napus HOM05D004738 ORTHO05D006439 8.8e-38 161.0 162 45.7
Ciclev10025569m.g Citrus clementina HOM05D004738 ORTHO05D006439 8.8e-38 161.0 164 43.3
Cc04_g03640 Coffea canephora HOM05D004738 ORTHO05D006439 8.8e-38 161.0 164 44.5
THA.LOC104808210 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 8.8e-38 161.0 164 46.3
ATR0083G024 Amborella trichopoda HOM05D004738 ORTHO05D006439 1.1e-37 160.6 164 48.2
BcaC03g15976 Brassica carinata HOM05D004738 ORTHO05D006439 1.1e-37 160.6 162 45.1
BolC2t09746H Brassica oleracea HOM05D004738 ORTHO05D006439 1.1e-37 160.6 162 45.1
BraA02t07352Z Brassica rapa HOM05D004738 ORTHO05D006439 1.1e-37 160.6 162 45.7
Gorai.002G058000 Gossypium raimondii HOM05D004738 ORTHO05D006439 1.1e-37 160.6 164 45.1
MD17G1198400 Malus domestica HOM05D004738 ORTHO05D006439 1.1e-37 160.6 164 45.1
Oeu022417.1 Olea europaea HOM05D004738 ORTHO05D006439 1.1e-37 160.6 164 45.1
Solyc03g120430.3 Solanum lycopersicum HOM05D004738 ORTHO05D006439 1.1e-37 160.6 164 45.1
Sopen00g008920 Solanum pennellii HOM05D004738 ORTHO05D006439 1.1e-37 160.6 164 45.1
Sopen03g039310 Solanum pennellii HOM05D004738 ORTHO05D006439 1.1e-37 160.6 164 45.1
C02p37360 Brassica napus HOM05D004738 ORTHO05D006439 1.5e-37 160.2 162 45.7
Gohir.A05G127000 Gossypium hirsutum HOM05D004738 ORTHO05D006439 1.5e-37 160.2 165 44.2
HanXRQChr04g0096441 Helianthus annuus HOM05D004738 ORTHO05D006439 1.5e-37 160.2 164 44.5
PSO210G3793 Papaver somniferum HOM05D004738 ORTHO05D006439 1.5e-37 160.2 164 44.5
Sc12g0009100 Simmondsia chinensis HOM05D004738 ORTHO05D006439 1.5e-37 160.2 164 43.9
Zm00001eb156570 Zea mays HOM05D004738 ORTHO05D006439 1.5e-37 160.2 164 45.7
Nitab4.5_0005784g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 2.0e-37 159.8 164 44.5
Manes.04G120700 Manihot esculenta HOM05D004738 ORTHO05D006439 2.6e-37 159.5 164 43.3
PSO210G6241 Papaver somniferum HOM05D004738 ORTHO05D006439 2.6e-37 159.5 164 43.9
AUR62016418 Chenopodium quinoa HOM05D004738 ORTHO05D006439 3.3e-37 159.1 176 43.2
Lj3g0008822 Lotus japonicus HOM05D004738 ORTHO05D006439 3.3e-37 159.1 170 44.7
CARHR074130 Cardamine hirsuta HOM05D004738 ORTHO05D006439 4.4e-37 158.7 164 43.9
HanXRQChr02g0032631 Helianthus annuus HOM05D004738 ORTHO05D006439 4.4e-37 158.7 164 45.7
Ca_01103_v3 Cicer arietinum L. HOM05D004738 ORTHO05D006439 5.7e-37 158.3 164 43.9
DCAR_026302 Daucus carota HOM05D004738 ORTHO05D006439 5.7e-37 158.3 164 43.9
FAN14G4632 Fragaria x ananassa HOM05D004738 ORTHO05D006439 5.7e-37 158.3 176 43.2
Gorai.009G132100 Gossypium raimondii HOM05D004738 ORTHO05D006439 5.7e-37 158.3 171 43.9
Hund06597 Selenicereus undatus HOM05D004738 ORTHO05D006439 5.7e-37 158.3 165 44.8
CSS0037007 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 7.4e-37 157.9 164 44.5
Gohir.D03G073500 Gossypium hirsutum HOM05D004738 ORTHO05D006439 7.4e-37 157.9 161 45.3
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 9.7e-37 157.5 164 45.1
arahy.Tifrunner.gnm1.ann1.S5ELWT Arachis hypogaea HOM05D004738 ORTHO05D006439 1.3e-36 157.1 177 44.1
Lalb_Chr22g0351141 Lupinus albus HOM05D004738 ORTHO05D006439 1.3e-36 157.1 163 44.2
Phvul.005G173200 Phaseolus vulgaris HOM05D004738 ORTHO05D006439 1.3e-36 157.1 163 43.6
SHI09688 Sapria himalayana HOM05D004738 ORTHO05D006439 1.3e-36 157.1 172 42.4
Gohir.D05G127900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 2.2e-36 156.4 165 43.6
CANSAT56G4214 Cannabis sativa HOM05D004738 ORTHO05D006439 2.8e-36 156.0 164 42.1
Cfa002046 Carpinus fangiana HOM05D004738 ORTHO05D006439 2.8e-36 156.0 161 44.7
EL10Ac9g21974 Beta vulgaris HOM05D004738 ORTHO05D006439 6.3e-36 154.8 159 45.9
CAN.G438.45 Capsicum annuum HOM05D004738 ORTHO05D006439 8.2e-36 154.5 164 42.1
Peaxi162Scf00015g00234 Petunia axillaris HOM05D004738 ORTHO05D006439 1.1e-35 154.1 164 43.3
unitig_21.g20511 Utricularia gibba HOM05D004738 ORTHO05D006439 1.4e-35 153.7 163 43.6
Lj3g0001201 Lotus japonicus HOM05D004738 ORTHO05D006439 2.4e-35 152.9 163 44.2
Lalb_Chr14g0373571 Lupinus albus HOM05D004738 ORTHO05D006439 3.1e-35 152.5 163 42.3
Aa31LG4G650 Aethionema arabicum HOM05D004738 ORTHO05D006439 4.1e-35 152.1 164 42.7
THA.LOC104812476 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 9.1e-35 151.0 163 42.3
Potri.001G177300 Populus trichocarpa HOM05D004738 ORTHO05D006439 1.2e-34 150.6 176 42.0
Haze_16464 Corylus avellana HOM05D004738 ORTHO05D006439 5.0e-33 145.2 188 38.8
SEGI_20298 Sequoiadendron giganteum HOM05D004738 ORTHO05D006439 6.1e-31 138.3 164 40.2
CBR_g49861 Chara braunii HOM05D004738 ORTHO05D006439 3.0e-30 136.0 163 36.2
Nn2g11397 Nelumbo nucifera HOM05D004738 ORTHO05D006439 3.9e-30 135.6 162 41.4
Pp3c18_16070 Physcomitrium patens HOM05D004738 ORTHO05D006439 7.4e-29 131.3 163 37.4
HPP92_011544 Vanilla planifolia HOM05D004738 ORTHO05D006439 9.7e-29 131.0 111 53.2
Duzib192G0909 Durio zibethinus HOM05D004738 ORTHO05D006439 6.3e-28 128.3 113 49.6
Mapoly0010s0209 Marchantia polymorpha HOM05D004738 ORTHO05D006439 8.2e-28 127.9 161 35.4
AagrBONN_evm.TU.Sc2ySwM_368.190 Anthoceros agrestis HOM05D004738 ORTHO05D006439 2.4e-27 126.3 178 34.8
SMO147G0425 Selaginella moellendorffii HOM05D004738 ORTHO05D006439 7.7e-26 121.3 162 37.0
AT1G80380 Arabidopsis thaliana HOM05D004738 ORTHO05D006439 1.3e-25 120.6 107 49.5
Hund00584 Selenicereus undatus HOM05D004738 ORTHO05D006439 8.5e-25 117.9 129 41.1
Cre12.g542300 Chlamydomonas reinhardtii HOM05D004738 ORTHO05D006439 2.3e-22 109.8 164 36.6
Oeu033460.1 Olea europaea HOM05D004738 ORTHO05D006439 2.3e-22 109.8 77 55.8
PRCOL_00005044 Prasinoderma coloniale HOM05D004738 ORTHO05D006439 3.7e-20 102.4 164 34.1
MCO11G539 Micromonas commoda HOM05D004738 ORTHO05D006439 1.1e-19 100.9 163 35.0
Dinv38066 Davidia involucrata HOM05D004738 ORTHO05D006439 3.2e-16 89.4 71 54.9
Psat5g299520 Pisum sativum HOM05D004738 ORTHO05D006439 7.2e-16 88.2 62 58.1
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 4.7e-15 85.5 58 63.8
Sabra01G0149000 Salix brachista HOM05D004738 ORTHO05D006439 9.8e-13 77.8 79 40.5
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 2.2e-12 76.6 56 60.7
arahy.Tifrunner.gnm1.ann1.7R7SHJ Arachis hypogaea HOM05D004738 ORTHO05D006439 4.1e-11 72.4 55 56.4
Nn4g26563 Nelumbo nucifera HOM05D004738 ORTHO05D006439 1.5e-08 63.9 50 56.0
Dinv38065 Davidia involucrata HOM05D004738 ORTHO05D006439 6.1e-07 58.5 82 37.8
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 4.0e-06 55.8 37 62.2


User provided reference genes

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