Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR636G0081 Trochodendron aralioides HOM05D006034 ORTHO05D007535 1.2e-190 669.8 370 100.0
COL.COLO4_18220 Corchorus olitorius HOM05D006034 ORTHO05D001756 5.9e-126 454.9 307 80.5
GSVIVG01015225001 Vitis vinifera HOM05D006034 ORTHO05D007535 1.3e-125 453.8 318 79.6
Gohir.D06G070100 Gossypium hirsutum HOM05D006034 ORTHO05D007535 1.4e-124 450.3 310 76.8
Ciclev10008848m.g Citrus clementina HOM05D006034 ORTHO05D007535 3.2e-124 449.1 296 77.0
Gorai.010G081700 Gossypium raimondii HOM05D006034 ORTHO05D007535 4.2e-124 448.7 294 79.9
Gohir.A06G071400 Gossypium hirsutum HOM05D006034 ORTHO05D007535 1.4e-122 443.7 310 73.5
PGSC0003DMG400000341 Solanum tuberosum HOM05D006034 ORTHO05D007535 2.3e-122 443.0 299 78.9
PSO210G3620 Papaver somniferum HOM05D006034 ORTHO05D007535 2.6e-121 439.5 339 72.9
PSO210G1139 Papaver somniferum HOM05D006034 ORTHO05D007535 2.2e-120 436.4 337 73.0
Cc06_g11190 Coffea canephora HOM05D006034 ORTHO05D007535 3.1e-119 432.6 321 73.8
Aqoxy7G04066 Aquilegia oxysepala HOM05D006034 ORTHO05D007535 5.3e-119 431.8 257 78.6
HanXRQChr12g0354751 Helianthus annuus HOM05D006034 ORTHO05D007535 5.9e-118 428.3 321 65.1
CAN.G1241.18 Capsicum annuum HOM05D006034 ORTHO05D007535 1.3e-117 427.2 299 76.9
Migut.J00593 Erythranthe guttata HOM05D006034 ORTHO05D007535 1.7e-117 426.8 320 64.7
Lsat_1_v5_gn_5_145641 Lactuca sativa HOM05D006034 ORTHO05D007535 2.9e-117 426.0 310 75.2
FvH4_1g22100 Fragaria vesca HOM05D006034 ORTHO05D007535 1.5e-116 423.7 258 75.2
FAN19G2130 Fragaria x ananassa HOM05D006034 ORTHO05D007535 1.5e-116 423.7 258 75.2
Potri.006G150200 Populus trichocarpa HOM05D006034 ORTHO05D007535 4.2e-116 422.2 256 75.0
QL02p062983 Quercus lobata HOM05D006034 ORTHO05D007535 4.2e-116 422.2 257 77.0
CiPaw.03G217800 Carya illinoinensis HOM05D006034 ORTHO05D007535 9.4e-116 421.0 318 69.2
MELO3C015455.2 Cucumis melo HOM05D006034 ORTHO05D007535 9.4e-116 421.0 309 72.8
SGA_v2.0_scaffold62G21594 Striga asiatica HOM05D006034 ORTHO05D007535 1.6e-115 420.2 327 70.3
ECA234G0840 Erigeron canadensis HOM05D006034 ORTHO05D001756 2.1e-115 419.9 258 76.7
Sopen12g003720 Solanum pennellii HOM05D006034 ORTHO05D007535 1.8e-114 416.8 341 67.7
RcHm_v2.0_Chr2g0093061 Rosa chinensis HOM05D006034 ORTHO05D007535 2.3e-114 416.4 334 69.2
Manes.03G032201 Manihot esculenta HOM05D006034 ORTHO05D007535 3.9e-114 415.6 324 71.9
Lj2g0022455 Lotus japonicus HOM05D006034 ORTHO05D007535 1.1e-113 414.1 325 64.9
FAN26G1667 Fragaria x ananassa HOM05D006034 ORTHO05D007535 1.5e-113 413.7 254 75.2
Prupe.7G212400 Prunus persica HOM05D006034 ORTHO05D007535 2.8e-112 409.5 293 76.1
Lj7C673T11 Lonicera japonica HOM05D006034 ORTHO05D007535 3.7e-112 409.1 259 73.4
MD02G1076200 Malus domestica HOM05D006034 ORTHO05D007535 3.7e-112 409.1 256 73.4
Eucgr.C00910 Eucalyptus grandis HOM05D006034 ORTHO05D007535 1.6e-110 403.7 310 66.1
MD15G1204600 Malus domestica HOM05D006034 ORTHO05D007535 2.6e-110 402.9 248 75.4
Glyma.07G128800 Glycine max HOM05D006034 ORTHO05D007535 8.5e-109 397.9 237 79.7
HPP92_023401 Vanilla planifolia HOM05D006034 ORTHO05D007535 8.0e-107 391.3 299 71.2
THA.LOC104807985 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 6.8e-106 388.3 327 66.1
AUR62031326 Chenopodium quinoa HOM05D006034 ORTHO05D007535 2.6e-105 386.3 235 74.9
Lalb_Chr24g0393801 Lupinus albus HOM05D006034 ORTHO05D007535 5.7e-105 385.2 233 77.7
FAN23G1099 Fragaria x ananassa HOM05D006034 ORTHO05D007535 1.7e-104 383.6 254 71.7
Medtr4g036675 Medicago truncatula HOM05D006034 ORTHO05D007535 2.2e-104 383.3 238 75.6
Oeu021834.2 Olea europaea HOM05D006034 ORTHO05D007535 4.8e-104 382.1 326 66.6
TPR.G35498 Trifolium pratense HOM05D006034 ORTHO05D007535 4.8e-104 382.1 239 75.3
Sed0009633 Sechium edule HOM05D006034 ORTHO05D007535 1.1e-103 380.9 238 75.2
TWI32G0461 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 1.4e-103 380.6 286 72.7
Psat1g049600 Pisum sativum HOM05D006034 ORTHO05D007535 5.4e-103 378.6 238 74.4
Actinidia25263 Actinidia chinensis HOM05D006034 ORTHO05D007535 1.2e-102 377.5 305 72.1
SEGI_04673 Sequoiadendron giganteum HOM05D006034 ORTHO05D007535 5.9e-102 375.2 258 67.4
arahy.Tifrunner.gnm1.ann1.VJWZ4U Arachis hypogaea HOM05D006034 ORTHO05D007535 1.0e-101 374.4 240 74.6
VMungo0464G0679 Vigna mungo HOM05D006034 ORTHO05D007535 1.0e-101 374.4 235 74.5
Os01g0722100 Oryza sativa ssp. japonica HOM05D006034 ORTHO05D007535 6.5e-101 371.7 298 68.5
Mapoly0014s0071 Marchantia polymorpha HOM05D006034 ORTHO05D007535 8.5e-101 371.3 258 66.7
arahy.Tifrunner.gnm1.ann1.JYMB6X Arachis hypogaea HOM05D006034 ORTHO05D007535 2.1e-99 366.7 240 72.9
CsaV3_1G040270 Cucumis sativus L. HOM05D006034 ORTHO05D007535 2.7e-99 366.3 272 73.2
Sabra06G0118900 Salix brachista HOM05D006034 ORTHO05D007535 3.6e-99 365.9 259 66.4
ATR0705G153 Amborella trichopoda HOM05D006034 ORTHO05D007535 3.0e-98 362.8 321 60.4
Zm00001eb361670 Zea mays HOM05D006034 ORTHO05D007535 1.5e-97 360.5 323 64.4
PGR142G3838 Punica granatum HOM05D006034 ORTHO05D007535 2.2e-96 356.7 256 66.0
A08p19610 Brassica napus HOM05D006034 ORTHO05D007535 3.8e-93 345.9 292 66.4
Sp7g27400 Schrenkiella parvula HOM05D006034 ORTHO05D007535 8.6e-93 344.7 292 67.5
Carub.0007s1101 Capsella rubella HOM05D006034 ORTHO05D007535 4.2e-92 342.4 257 63.4
Hma1.2p1_0800F.1_g219990 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 4.2e-92 342.4 192 83.9
C03p89230 Brassica napus HOM05D006034 ORTHO05D007535 5.6e-92 342.0 336 61.9
BolC3t21232H Brassica oleracea HOM05D006034 ORTHO05D007535 5.6e-92 342.0 336 61.6
Pp3c5_18660 Physcomitrium patens HOM05D006034 ORTHO05D007535 5.6e-92 342.0 252 61.9
BraA08t33919Z Brassica rapa HOM05D006034 ORTHO05D007535 1.6e-91 340.5 334 61.7
AL7G22860 Arabidopsis lyrata HOM05D006034 ORTHO05D007535 6.1e-91 338.6 292 67.1
SMO118G0489 Selaginella moellendorffii HOM05D006034 ORTHO05D007535 8.0e-91 338.2 244 65.6
THA.LOC104827538 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 1.4e-90 337.4 300 63.7
BcaB03g12611 Brassica carinata HOM05D006034 ORTHO05D007535 1.8e-90 337.0 292 66.1
BcaC01g01176 Brassica carinata HOM05D006034 ORTHO05D007535 3.0e-90 336.3 334 60.8
CARHR237370 Cardamine hirsuta HOM05D006034 ORTHO05D007535 3.0e-90 336.3 292 65.8
FAN28G0362 Fragaria x ananassa HOM05D006034 ORTHO05D007535 7.5e-89 331.6 215 74.0
MSTRG.19527 Avicennia marina HOM05D006034 ORTHO05D007535 2.4e-87 326.6 203 75.9
CBR_g36936 Chara braunii HOM05D006034 ORTHO05D007535 2.9e-85 319.7 252 60.3
Thecc.09G091900 Theobroma cacao HOM05D006034 ORTHO05D007535 3.3e-84 316.2 203 75.9
EL10Ac8g19307 Beta vulgaris HOM05D006034 ORTHO05D007535 5.6e-84 315.5 232 76.3
Nn8g38904 Nelumbo nucifera HOM05D006034 ORTHO05D007535 1.2e-83 314.3 337 58.5
Duzib150G0162 Durio zibethinus HOM05D006034 ORTHO05D007535 2.3e-82 310.1 270 67.0
SalBow6G0258 Salvia bowleyana HOM05D006034 ORTHO05D007535 2.3e-82 310.1 238 64.7
Solyc12g008790.3 Solanum lycopersicum HOM05D006034 ORTHO05D007535 4.0e-82 309.3 274 65.7
ClCG03G015740 Citrullus lanatus HOM05D000085 ORTHO05D001756 7.5e-81 305.1 312 58.7
Glyma.01G003200 Glycine max HOM05D006034 ORTHO05D007535 4.9e-80 302.4 203 70.9
AagrBONN_evm.TU.Sc2ySwM_228.1841 Anthoceros agrestis HOM05D006034 ORTHO05D007535 6.4e-80 302.0 320 57.5
vmacro17221 Vaccinium macrocarpon HOM05D006034 ORTHO05D007535 1.3e-77 294.3 333 53.2
Nitab4.5_0000540g0250 Nicotiana tabacum HOM05D006034 ORTHO05D007535 3.0e-77 293.1 324 56.8
Aa31LG2G20940 Aethionema arabicum HOM05D006034 ORTHO05D007535 1.1e-74 284.6 281 54.1
Haze_25892 Corylus avellana HOM05D006034 ORTHO05D007535 1.3e-72 277.7 309 57.3
CsaV3_UNG066530 Cucumis sativus L. HOM05D006034 ORTHO05D007535 1.9e-71 273.9 158 76.6
BcaC09g51741 Brassica carinata HOM05D000577 ORTHO05D007535 4.1e-71 272.7 237 57.8
CDE05G1399 Ceratophyllum demersum HOM05D006034 ORTHO05D007535 1.3e-69 267.7 290 56.6
Atru.chr7.1566 Acer truncatum HOM05D006034 ORTHO05D007535 1.1e-68 264.6 238 68.5
Thhalv10025613m.g Eutrema salsugineum HOM05D006034 ORTHO05D007535 1.1e-68 264.6 251 53.8
Sed0024135 Sechium edule HOM05D006034 ORTHO05D007535 4.7e-67 259.2 211 71.6
Nitab4.5_0011903g0020 Nicotiana tabacum HOM05D006034 ORTHO05D007535 6.2e-67 258.8 333 52.3
Ca_25619_v3 Cicer arietinum L. HOM05D006034 ORTHO05D007535 1.8e-66 257.3 213 63.8
AUR62027411 Chenopodium quinoa HOM05D006034 ORTHO05D007535 1.2e-65 254.6 191 64.9
Hund24744 Selenicereus undatus HOM05D006034 ORTHO05D007535 1.5e-65 254.2 378 48.4
Hma1.2p1_0800F.1_g219980 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 9.2e-63 245.0 165 89.1
Sc18g0001930 Simmondsia chinensis HOM05D006034 ORTHO05D007535 2.4e-58 230.3 229 60.7
Phvul.004G171500 Phaseolus vulgaris HOM05D006034 ORTHO05D007535 4.6e-54 216.1 136 73.5
DCAR_011988 Daucus carota HOM05D006034 ORTHO05D007535 2.3e-53 213.8 294 50.0
THA.LOC104814611 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 3.0e-53 213.4 224 51.8
MD13G1273400 Malus domestica HOM05D006034 ORTHO05D007535 3.9e-53 213.0 157 68.2
C01p09780 Brassica napus HOM05D006034 ORTHO05D007535 5.1e-53 212.6 212 53.8
TWI34G0201 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 7.3e-52 208.8 124 74.2
PRCOL_00006271 Prasinoderma coloniale HOM05D006034 ORTHO05D007535 1.1e-50 204.9 248 43.5
Rhsim05G0022600 Rhododendron simsii HOM05D000085 ORTHO05D001756 7.6e-49 198.7 236 48.3
Peaxi162Scf00498g00128 Petunia axillaris HOM05D006034 ORTHO05D007535 5.4e-47 192.6 129 68.2
C01p09940 Brassica napus HOM05D000577 ORTHO05D007535 3.3e-44 183.3 258 42.6
MBI01_g02257_MAGBIO Magnolia biondii HOM05D006034 ORTHO05D007535 1.4e-42 177.9 253 42.7
CSS0015474 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 5.3e-42 176.0 195 60.0
BcaC09g52218 Brassica carinata HOM05D006034 ORTHO05D007535 1.7e-40 171.0 135 63.0
CSS0007101 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 2.1e-38 164.1 102 79.4
BolC1t00956H Brassica oleracea HOM05D000577 ORTHO05D001093 1.1e-36 158.3 258 39.1
AT4G29540 Arabidopsis thaliana HOM05D006034 ORTHO05D007535 8.1e-35 152.1 127 57.5
Ca_29456_v3 Cicer arietinum L. HOM05D003386 ORTHO05D007535 2.2e-32 144.1 253 36.8
arahy.Tifrunner.gnm1.ann1.ZF8ARW Arachis hypogaea HOM05D006034 ORTHO05D007535 3.8e-32 143.3 91 74.7
arahy.Tifrunner.gnm1.ann1.9T8A1S Arachis hypogaea HOM05D006034 ORTHO05D007535 5.5e-31 139.4 104 67.3
arahy.Tifrunner.gnm1.ann1.N9NTP8 Arachis hypogaea HOM05D000344 ORTHO05D005296 5.5e-31 139.4 91 73.6
C01p09900 Brassica napus HOM05D006034 ORTHO05D007535 3.0e-29 133.7 121 57.0
arahy.Tifrunner.gnm1.ann1.4X02I9 Arachis hypogaea HOM05D006034 ORTHO05D007535 1.1e-28 131.7 91 69.2
THA.LOC109116077 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 5.5e-23 112.8 120 52.5
Hma1.2p1_0800F.1_g220000 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 1.3e-21 108.2 67 77.6
unitig_27.g24727 Utricularia gibba HOM05D006034 ORTHO05D007535 5.1e-21 106.3 96 79.2
MD17G1181800 Malus domestica HOM05D006034 ORTHO05D007535 7.4e-20 102.4 62 79.0
BolC1t00940H Brassica oleracea HOM05D006034 ORTHO05D007535 6.3e-19 99.4 83 56.6
arahy.Tifrunner.gnm1.ann1.UHY7MZ Arachis hypogaea HOM05D006034 ORTHO05D005279 8.2e-19 99.0 91 61.5
Haze_27155 Corylus avellana HOM05D003386 ORTHO05D007535 6.9e-18 95.9 210 31.4
CsaV3_UNG066540 Cucumis sativus L. HOM05D006034 ORTHO05D007535 4.5e-17 93.2 65 67.7
arahy.Tifrunner.gnm1.ann1.RIAB4B Arachis hypogaea HOM05D006034 ORTHO05D007535 9.4e-15 85.5 51 80.4
Dinv36751 Davidia involucrata HOM05D006034 ORTHO05D007535 4.6e-14 83.2 51 78.4
arahy.Tifrunner.gnm1.ann1.C7GQ4M Arachis hypogaea HOM05D006034 ORTHO05D007535 2.0e-12 77.8 55 67.3
BraA01t00799Z Brassica rapa HOM05D006034 ORTHO05D007535 4.7e-06 56.6 117 35.0


User provided reference genes

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