Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G2732 Trochodendron aralioides HOM05D003029 ORTHO05D003413 2.2e-166 589.3 407 100.0
TAR362G1056 Trochodendron aralioides HOM05D003029 ORTHO05D003413 1.3e-105 387.5 407 70.8
TAR636G0249 Trochodendron aralioides HOM05D003029 ORTHO05D003413 1.4e-80 304.3 529 47.8
Dinv14526 Davidia involucrata HOM05D003029 ORTHO05D003413 9.8e-66 255.0 444 56.5
Nn3g20072 Nelumbo nucifera HOM05D003029 ORTHO05D003413 5.4e-64 249.2 414 61.6
TAR365G0314 Trochodendron aralioides HOM05D003029 ORTHO05D003413 1.2e-63 248.1 324 59.6
GSVIVG01021020001 Vitis vinifera HOM05D003029 ORTHO05D003413 6.6e-62 242.3 456 53.9
Nn3g20075 Nelumbo nucifera HOM05D003029 ORTHO05D003413 8.6e-62 241.9 410 58.8
CiPaw.01G117300 Carya illinoinensis HOM05D003029 ORTHO05D003413 8.1e-52 208.8 449 51.0
MBI07_g42750_MAGBIO Magnolia biondii HOM05D003029 ORTHO05D003413 3.1e-51 206.8 506 51.6
Atru.chr6.1447 Acer truncatum HOM05D003029 ORTHO05D003413 8.9e-51 205.3 417 52.5
Thecc.04G195700 Theobroma cacao HOM05D003029 ORTHO05D003413 1.5e-50 204.5 458 51.7
Cfa014958 Carpinus fangiana HOM05D003029 ORTHO05D003413 9.9e-50 201.8 456 51.1
CSS0049755 Camellia sinensis var. sinensis HOM05D003029 ORTHO05D003413 1.3e-49 201.4 450 51.6
CiPaw.14G040000 Carya illinoinensis HOM05D003029 ORTHO05D003413 3.7e-49 199.9 408 52.2
Actinidia11454 Actinidia chinensis HOM05D003029 ORTHO05D003413 7.1e-48 195.7 425 49.6
Prupe.8G196300 Prunus persica HOM05D003029 ORTHO05D003413 2.3e-46 190.7 480 44.6
RcHm_v2.0_Chr4g0413691 Rosa chinensis HOM05D003029 ORTHO05D003413 5.1e-46 189.5 454 47.8
Atru.chr4.1590 Acer truncatum HOM05D003029 ORTHO05D003413 1.5e-45 188.0 469 49.7
Gohir.D02G022800 Gossypium hirsutum HOM05D003029 ORTHO05D003413 6.2e-44 182.6 466 50.4
Gorai.005G028200 Gossypium raimondii HOM05D003029 ORTHO05D003413 6.2e-44 182.6 466 50.4
Duzib268G0331 Durio zibethinus HOM05D003029 ORTHO05D003413 8.9e-43 178.7 459 49.0
Actinidia21255 Actinidia chinensis HOM05D003029 ORTHO05D003413 1.2e-42 178.3 459 48.4
Haze_03354 Corylus avellana HOM05D003029 ORTHO05D003413 2.0e-42 177.6 323 50.5
Gohir.A10G127900 Gossypium hirsutum HOM05D003029 ORTHO05D003413 9.9e-42 175.3 463 48.6
PSO017G1724 Papaver somniferum HOM05D003029 ORTHO05D003413 9.9e-42 175.3 461 49.5
Gohir.A02G019500 Gossypium hirsutum HOM05D003029 ORTHO05D003413 2.2e-41 174.1 468 49.1
MD04G1017100 Malus domestica HOM05D003029 ORTHO05D003413 3.8e-41 173.3 453 44.4
Prupe.1G164200 Prunus persica HOM05D003029 ORTHO05D003413 8.4e-41 172.2 478 39.1
Actinidia35843 Actinidia chinensis HOM05D003029 ORTHO05D003413 4.2e-40 169.9 458 49.3
Duzib151G1197 Durio zibethinus HOM05D003029 ORTHO05D003413 5.4e-40 169.5 463 47.5
Duzib212G0885 Durio zibethinus HOM05D003029 ORTHO05D003413 7.1e-40 169.1 462 47.6
Glyma.18G001900 Glycine max HOM05D003029 ORTHO05D003413 7.1e-40 169.1 444 45.3
Haze_11649 Corylus avellana HOM05D003029 ORTHO05D003413 2.1e-39 167.5 351 44.4
MD13G1282000 Malus domestica HOM05D003029 ORTHO05D003413 1.7e-38 164.5 447 38.5
MD04G1017000 Malus domestica HOM05D003029 ORTHO05D003413 3.9e-38 163.3 457 39.2
Manes.13G051200 Manihot esculenta HOM05D003029 ORTHO05D003413 3.9e-38 163.3 327 44.3
Manes.12G049400 Manihot esculenta HOM05D003029 ORTHO05D003413 1.5e-37 161.4 314 51.0
TWI36G1114 Tripterygium wilfordii HOM05D003029 ORTHO05D003413 2.5e-37 160.6 423 39.5
Gorai.011G153200 Gossypium raimondii HOM05D003029 ORTHO05D003413 3.3e-37 160.2 469 48.6
PSO063G2363 Papaver somniferum HOM05D003029 ORTHO05D003413 5.6e-37 159.5 476 47.9
Actinidia21254 Actinidia chinensis HOM05D003029 ORTHO05D003413 5.3e-35 152.9 333 45.9
COL.COLO4_20221 Corchorus olitorius HOM05D003029 ORTHO05D003413 9.0e-35 152.1 343 46.6
TWI18G0251 Tripterygium wilfordii HOM05D003029 ORTHO05D003413 1.5e-34 151.4 422 36.3
FAN22G0425 Fragaria x ananassa HOM05D003029 ORTHO05D003413 4.4e-34 149.8 282 48.2
CiPaw.02G064700 Carya illinoinensis HOM05D003029 ORTHO05D003413 1.3e-33 148.3 320 51.6
FAN12G1114 Fragaria x ananassa HOM05D003029 ORTHO05D003413 1.3e-33 148.3 529 42.0
Actinidia23384 Actinidia chinensis HOM05D003029 ORTHO05D003413 2.9e-33 147.1 444 48.0
FvH4_4g13340 Fragaria vesca HOM05D003029 ORTHO05D003413 3.8e-33 146.7 529 42.0
Actinidia28994 Actinidia chinensis HOM05D003029 ORTHO05D003413 6.4e-33 146.0 437 45.5
Rhsim13G0050000 Rhododendron simsii HOM05D003029 ORTHO05D003413 1.1e-32 145.2 426 42.0
FAN17G0226 Fragaria x ananassa HOM05D003029 ORTHO05D003413 2.4e-32 144.1 300 49.3
Sabra16G0202200 Salix brachista HOM05D003029 ORTHO05D003413 2.4e-32 144.1 310 45.8
TWI75G0963 Tripterygium wilfordii HOM05D003029 ORTHO05D003413 3.2e-32 143.7 408 39.7
Potri.017G058500 Populus trichocarpa HOM05D003029 ORTHO05D003413 7.1e-32 142.5 445 43.6
Manes.03G144600 Manihot esculenta HOM05D003029 ORTHO05D003413 1.6e-31 141.4 448 44.9
Eucgr.H00027 Eucalyptus grandis HOM05D003029 ORTHO05D003413 2.7e-31 140.6 456 27.0
Dinv27203 Davidia involucrata HOM05D003029 ORTHO05D003413 6.0e-31 139.4 386 50.5
FAN07G2221 Fragaria x ananassa HOM05D003029 ORTHO05D003413 1.0e-30 138.7 534 37.3
TWI36G0576 Tripterygium wilfordii HOM05D003029 ORTHO05D003413 1.7e-30 137.9 410 35.1
Glyma.11G255200 Glycine max HOM05D003029 ORTHO05D003413 3.9e-30 136.7 442 46.4
Gorai.006G223500 Gossypium raimondii HOM05D003029 ORTHO05D003413 3.9e-30 136.7 467 44.3
Sabra16G0202400 Salix brachista HOM05D003029 ORTHO05D003413 3.9e-30 136.7 311 48.9
vmacro02792 Vaccinium macrocarpon HOM05D003029 ORTHO05D003413 3.9e-30 136.7 382 47.1
CANSAT78G1052 Cannabis sativa HOM05D003029 ORTHO05D003413 1.9e-29 134.4 482 42.9
QL06p026140 Quercus lobata HOM05D003029 ORTHO05D003413 4.3e-29 133.3 339 49.3
Rhsim02G0061600 Rhododendron simsii HOM05D003029 ORTHO05D003413 8.1e-28 129.0 360 44.7
Dinv38178 Davidia involucrata HOM05D003029 ORTHO05D003413 1.4e-27 128.3 377 52.5
Glyma.08G110100 Glycine max HOM05D003029 ORTHO05D003413 2.4e-27 127.5 479 39.0
Lalb_Chr13g0294851 Lupinus albus HOM05D003029 ORTHO05D003413 2.4e-27 127.5 462 38.5
Glyma.05G152400 Glycine max HOM05D003029 ORTHO05D003413 3.1e-27 127.1 480 39.6
Sabra17G0052200 Salix brachista HOM05D003029 ORTHO05D003413 6.9e-27 125.9 314 47.1
Gohir.D09G199800 Gossypium hirsutum HOM05D003029 ORTHO05D003413 1.5e-26 124.8 467 45.2
Gohir.D10G138100 Gossypium hirsutum HOM05D003029 ORTHO05D003413 2.9e-25 120.6 273 50.5
Sabra17G0052100 Salix brachista HOM05D003029 ORTHO05D003413 3.8e-25 120.2 467 39.6
CSS0036198 Camellia sinensis var. sinensis HOM05D003029 ORTHO05D003413 1.9e-24 117.9 195 60.5
BolC1t05561H Brassica oleracea HOM05D003029 ORTHO05D003413 1.2e-23 115.2 436 31.4
Cc03_g08440 Coffea canephora HOM05D003029 ORTHO05D003413 2.7e-23 114.0 304 37.2
Sp3g06230 Schrenkiella parvula HOM05D003029 ORTHO05D003413 3.5e-23 113.6 425 35.3
Carub.0008s0826 Capsella rubella HOM05D003029 ORTHO05D003413 4.6e-23 113.2 414 45.7
Nitab4.5_0000850g0180 Nicotiana tabacum HOM05D003029 ORTHO05D003413 6.0e-23 112.8 434 41.5
Sp3g06210 Schrenkiella parvula HOM05D003029 ORTHO05D003413 6.0e-23 112.8 403 36.0
Carub.0003s0681 Capsella rubella HOM05D003029 ORTHO05D003413 1.3e-22 111.7 414 36.0
Lalb_Chr07g0186821 Lupinus albus HOM05D003029 ORTHO05D003413 1.3e-22 111.7 465 39.1
Rhsim09G0059700 Rhododendron simsii HOM05D003029 ORTHO05D003413 1.3e-22 111.7 400 38.5
PGSC0003DMG400015747 Solanum tuberosum HOM05D003029 ORTHO05D003413 1.3e-22 111.7 456 41.0
Manes.15G056400 Manihot esculenta HOM05D003029 ORTHO05D003413 1.8e-22 111.3 400 44.0
Lj4g0000581 Lotus japonicus HOM05D003029 ORTHO05D003413 2.3e-22 110.9 516 35.3
GSVIVG01004954001 Vitis vinifera HOM05D003029 ORTHO05D003413 3.0e-22 110.5 406 36.0
Nitab4.5_0000676g0030 Nicotiana tabacum HOM05D003029 ORTHO05D003413 3.9e-22 110.2 432 39.6
CAN.G765.36 Capsicum annuum HOM05D003029 ORTHO05D003413 8.7e-22 109.0 449 44.1
Oeu049048.2 Olea europaea HOM05D003029 ORTHO05D003413 1.1e-21 108.6 432 44.2
Thhalv10020618m.g Eutrema salsugineum HOM05D003029 ORTHO05D003413 1.5e-21 108.2 412 36.4
Medtr8g081570 Medicago truncatula HOM05D003029 ORTHO05D003413 1.5e-21 108.2 471 43.9
Solyc05g053770.4 Solanum lycopersicum HOM05D003029 ORTHO05D003413 1.9e-21 107.8 456 40.4
MBI07_g16779_MAGBIO Magnolia biondii HOM05D003029 ORTHO05D003413 9.6e-21 105.5 123 52.8
BcaB04g21298 Brassica carinata HOM05D003029 ORTHO05D003413 1.3e-20 105.1 409 35.9
CDE02G0447 Ceratophyllum demersum HOM05D003029 ORTHO05D003413 2.1e-20 104.4 393 42.7
Potri.017G058600 Populus trichocarpa HOM05D003029 ORTHO05D003413 3.7e-20 103.6 247 48.6
Sopen05g032240 Solanum pennellii HOM05D003029 ORTHO05D003413 3.7e-20 103.6 455 40.2
VMungo0251G2529 Vigna mungo HOM05D003029 ORTHO05D003413 3.7e-20 103.6 339 42.2
Aa31LG5G17850 Aethionema arabicum HOM05D003029 ORTHO05D003413 4.8e-20 103.2 417 36.2
BraA01t04389Z Brassica rapa HOM05D003029 ORTHO05D003413 8.1e-20 102.4 421 34.0
Gohir.A09G206200 Gossypium hirsutum HOM05D003029 ORTHO05D003413 8.1e-20 102.4 264 41.3
arahy.Tifrunner.gnm1.ann1.AU34HA Arachis hypogaea HOM05D003029 ORTHO05D003413 1.1e-19 102.1 513 35.7
AL3G18580 Arabidopsis lyrata HOM05D003029 ORTHO05D003413 1.8e-19 101.3 393 36.6
Lalb_Chr12g0205611 Lupinus albus HOM05D003029 ORTHO05D003413 1.8e-19 101.3 462 38.1
MBI07_g27661_MAGBIO Magnolia biondii HOM05D003029 ORTHO05D003413 1.8e-19 101.3 321 38.6
Nitab4.5_0006920g0010 Nicotiana tabacum HOM05D003029 ORTHO05D003413 1.8e-19 101.3 462 39.4
PGSC0003DMG400004658 Solanum tuberosum HOM05D003029 ORTHO05D003413 5.3e-19 99.8 449 37.0
BcaC06g30775 Brassica carinata HOM05D003029 ORTHO05D003413 5.8e-18 96.3 418 35.2
Nitab4.5_0002260g0050 Nicotiana tabacum HOM05D003029 ORTHO05D003413 5.8e-18 96.3 475 41.1
SGA_v2.0_scaffold270G46323 Striga asiatica HOM05D003029 ORTHO05D003413 5.8e-18 96.3 440 28.6
Lalb_Chr23g0278361 Lupinus albus HOM05D003029 ORTHO05D003413 7.6e-18 95.9 321 39.6
MELO3C020427.2 Cucumis melo HOM05D003029 ORTHO05D003413 1.0e-17 95.5 435 41.1
TPR.G11807 Trifolium pratense HOM05D003029 ORTHO05D003413 1.0e-17 95.5 492 41.9
DCAR_004743 Daucus carota HOM05D003029 ORTHO05D003413 1.3e-17 95.1 400 35.2
Aqoxy2G03937 Aquilegia oxysepala HOM05D003029 ORTHO05D003413 1.7e-17 94.7 207 54.1
MSTRG.9800 Avicennia marina HOM05D003029 ORTHO05D003413 1.7e-17 94.7 436 42.4
CAN.G767.12 Capsicum annuum HOM05D003029 ORTHO05D003413 1.7e-17 94.7 428 43.7
AUR62018560 Chenopodium quinoa HOM05D003029 ORTHO05D003413 2.9e-17 94.0 465 26.9
Ca_17981_v3 Cicer arietinum L. HOM05D003029 ORTHO05D003413 8.4e-17 92.4 312 28.8
ClCG06G007970 Citrullus lanatus HOM05D003029 ORTHO05D003413 8.4e-17 92.4 430 41.2
Sed0025519 Sechium edule HOM05D003029 ORTHO05D003413 2.5e-16 90.9 433 37.9
C03p42770 Brassica napus HOM05D003029 ORTHO05D003413 4.2e-16 90.1 388 33.8
Sc13g0000380 Simmondsia chinensis HOM05D003029 ORTHO05D003413 4.2e-16 90.1 446 36.5
Potri.001G319500 Populus trichocarpa HOM05D003029 ORTHO05D003413 5.5e-16 89.7 397 49.1
HanXRQChr01g0022171 Helianthus annuus HOM05D003029 ORTHO05D003413 7.1e-16 89.4 465 35.3
Migut.G00757 Erythranthe guttata HOM05D003029 ORTHO05D003413 1.2e-15 88.6 438 38.1
arahy.Tifrunner.gnm1.ann1.R3AU9F Arachis hypogaea HOM05D003029 ORTHO05D003413 1.6e-15 88.2 527 33.4
MSTRG.4243 Avicennia marina HOM05D003029 ORTHO05D003413 1.6e-15 88.2 437 34.1
BNapus_Darmor_BZH_scaffold_109p00150 Brassica napus HOM05D003029 ORTHO05D003413 2.1e-15 87.8 150 38.0
BolC3t16546H Brassica oleracea HOM05D003029 ORTHO05D003413 2.7e-15 87.4 388 34.5
Phvul.003G050800 Phaseolus vulgaris HOM05D003029 ORTHO05D003413 2.7e-15 87.4 465 41.9
Phvul.003G050700 Phaseolus vulgaris HOM05D003029 ORTHO05D003413 3.5e-15 87.0 463 37.4
Sopen12g033250 Solanum pennellii HOM05D003029 ORTHO05D003413 3.5e-15 87.0 289 40.5
AUR62020859 Chenopodium quinoa HOM05D003029 ORTHO05D003413 6.0e-15 86.3 343 37.3
VMungo0251G3135 Vigna mungo HOM05D003029 ORTHO05D003413 7.9e-15 85.9 467 31.5
BraA03t12696Z Brassica rapa HOM05D003029 ORTHO05D003413 1.0e-14 85.5 404 32.9
Peaxi162Scf00423g00411 Petunia axillaris HOM05D003029 ORTHO05D003413 1.0e-14 85.5 504 38.5
Thhalv10004154m.g Eutrema salsugineum HOM05D003029 ORTHO05D003413 2.3e-14 84.3 412 37.1
ATR0561G140 Amborella trichopoda HOM05D003029 ORTHO05D003413 6.7e-14 82.8 423 41.8
Cpa.g.sc157.52 Carica papaya HOM05D003029 ORTHO05D003413 6.7e-14 82.8 111 45.9
ECA248G1735 Erigeron canadensis HOM05D003029 ORTHO05D003413 6.7e-14 82.8 437 42.3
A03p35170 Brassica napus HOM05D003029 ORTHO05D003413 1.1e-13 82.0 403 32.8
THA.LOC104822483 Tarenaya hassleriana HOM05D003029 ORTHO05D003413 1.9e-13 81.3 425 36.5
CsaV3_2G011760 Cucumis sativus L. HOM05D003029 ORTHO05D003413 2.5e-13 80.9 432 45.4
Potri.001G319600 Populus trichocarpa HOM05D003029 ORTHO05D003413 3.3e-13 80.5 396 46.2
SalBow8G5155 Salvia bowleyana HOM05D003029 ORTHO05D003413 3.3e-13 80.5 294 32.3
Cc01_g16520 Coffea canephora HOM05D003029 ORTHO05D003413 4.3e-13 80.1 374 41.7
DCAR_026643 Daucus carota HOM05D003029 ORTHO05D003413 5.7e-13 79.7 288 42.4
Psat5g100760 Pisum sativum HOM05D003029 ORTHO05D003413 1.6e-12 78.2 124 40.3
C07p39290 Brassica napus HOM05D003029 ORTHO05D003413 2.8e-12 77.4 420 33.8
BolC7t44449H Brassica oleracea HOM05D003029 ORTHO05D003413 2.8e-12 77.4 420 33.8
Oeu043441.1 Olea europaea HOM05D003029 ORTHO05D003413 6.2e-12 76.3 336 36.3
Sc05g0001900 Simmondsia chinensis HOM05D003029 ORTHO05D003413 6.2e-12 76.3 320 27.5
AT5G48610 Arabidopsis thaliana HOM05D003029 ORTHO05D003413 1.8e-11 74.7 329 46.2
Medtr3g084030 Medicago truncatula HOM05D005635 ORTHO05D006838 1.8e-11 74.7 238 36.1
Solyc12g098467.1 Solanum lycopersicum HOM05D003029 ORTHO05D003413 2.4e-11 74.3 254 32.3
AL43U10010 Arabidopsis lyrata HOM05D000011 ORTHO05D000018 3.1e-11 73.9 435 40.7
A06p39050 Brassica napus HOM05D003029 ORTHO05D003413 3.4e-10 70.5 438 32.6
CARHR081930 Cardamine hirsuta HOM05D003029 ORTHO05D003413 4.5e-10 70.1 331 36.3
Solyc12g098463.1 Solanum lycopersicum HOM05D003029 ORTHO05D003413 1.3e-09 68.6 231 42.9
PGR083G2864 Punica granatum HOM05D003029 ORTHO05D003413 5.0e-09 66.6 313 33.9
Sed0005118 Sechium edule HOM05D003029 ORTHO05D003413 5.0e-09 66.6 225 48.4
Ciclev10005071m.g Citrus clementina HOM05D003029 ORTHO05D003413 8.4e-09 65.9 125 43.2
ClCG05G003130 Citrullus lanatus HOM05D003029 ORTHO05D003413 1.4e-08 65.1 381 34.4
SalBow6G0319 Salvia bowleyana HOM05D003029 ORTHO05D003413 1.4e-08 65.1 406 31.5
SalBow6G1280 Salvia bowleyana HOM05D003029 ORTHO05D003413 1.4e-08 65.1 406 31.5
Oeu056423.1 Olea europaea HOM05D003029 ORTHO05D003413 7.1e-08 62.8 120 43.3
CARHR291990 Cardamine hirsuta HOM05D003029 ORTHO05D003413 1.2e-07 62.0 328 43.9
CsaV3_3G010750 Cucumis sativus L. HOM05D003029 ORTHO05D003413 1.6e-07 61.6 382 38.5
Lj2C1122G5 Lonicera japonica HOM05D003029 ORTHO05D003413 2.7e-07 60.8 113 39.8
Hma1.2p1_0349F.1_g132190 Hydrangea macrophylla HOM05D003029 ORTHO05D003413 4.6e-07 60.1 318 42.8
BcaC05g29857 Brassica carinata HOM05D003029 ORTHO05D003413 6.1e-07 59.7 414 30.7
Psat7g075040 Pisum sativum HOM05D003029 ORTHO05D003413 2.3e-06 57.8 246 44.7
SalBow3G0925 Salvia bowleyana HOM05D003029 ORTHO05D003413 2.3e-06 57.8 319 38.6
CDE05G0369 Ceratophyllum demersum HOM05D003029 ORTHO05D003413 3.9e-06 57.0 32 75.0
CDE05G1204 Ceratophyllum demersum HOM05D003029 ORTHO05D003413 6.7e-06 56.2 30 76.7
COL.COLO4_20222 Corchorus olitorius HOM05D003029 ORTHO05D003413 8.7e-06 55.8 26 88.5


User provided reference genes

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