Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G2716 Trochodendron aralioides HOM05D003671 ORTHO05D004285 0.0e+00 1724.1 908 100.0
TAR636G3051 Trochodendron aralioides HOM05D003671 ORTHO05D004285 0.0e+00 1386.3 908 81.9
TAR636G0316 Trochodendron aralioides HOM05D003671 ORTHO05D004285 0.0e+00 1384.8 908 81.7
Nn2g10354 Nelumbo nucifera HOM05D003671 ORTHO05D004285 0.0e+00 1149.8 913 69.7
MBI15_g31431_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 0.0e+00 1120.9 910 69.0
Dinv25318 Davidia involucrata HOM05D003671 ORTHO05D004285 0.0e+00 1090.5 908 64.5
Thecc.04G154700 Theobroma cacao HOM05D003671 ORTHO05D004285 0.0e+00 1081.6 905 66.5
Manes.09G115800 Manihot esculenta HOM05D003671 ORTHO05D004285 0.0e+00 1075.5 908 65.3
CSS0037141 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 7.5e-311 1070.5 914 64.0
Duzib151G0206 Durio zibethinus HOM05D003671 ORTHO05D004285 3.6e-310 1068.1 904 65.7
Prupe.6G290600 Prunus persica HOM05D003671 ORTHO05D004285 5.2e-309 1064.3 910 64.4
CSS0036424 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 3.4e-308 1061.6 914 63.7
Duzib212G0018 Durio zibethinus HOM05D003671 ORTHO05D004285 4.4e-308 1061.2 904 65.2
COL.COLO4_30007 Corchorus olitorius HOM05D003671 ORTHO05D004285 2.7e-305 1052.0 904 66.3
Rhsim05G0229100 Rhododendron simsii HOM05D003671 ORTHO05D004285 3.5e-305 1051.6 917 63.1
Actinidia29047 Actinidia chinensis HOM05D003671 ORTHO05D004285 1.7e-304 1049.3 910 64.5
Manes.09G116100 Manihot esculenta HOM05D003671 ORTHO05D004285 6.6e-304 1047.3 908 64.0
Actinidia11522 Actinidia chinensis HOM05D003671 ORTHO05D004285 1.1e-303 1046.6 913 63.3
RcHm_v2.0_Chr3g0460911 Rosa chinensis HOM05D003671 ORTHO05D004285 7.5e-300 1033.9 915 64.0
Cfa017060 Carpinus fangiana HOM05D003671 ORTHO05D004285 2.9e-299 1031.9 904 65.3
CSS0031435 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 1.1e-298 1030.0 912 62.7
Hma1.2p1_1052F.1_g252340 Hydrangea macrophylla HOM05D003671 ORTHO05D004285 1.1e-298 1030.0 908 63.5
CSS0025205 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 5.4e-298 1027.7 912 62.6
Ciclev10011037m.g Citrus clementina HOM05D003671 ORTHO05D004285 2.0e-297 1025.8 910 64.2
Atru.chr8.2376 Acer truncatum HOM05D003671 ORTHO05D004285 1.6e-294 1016.1 909 64.2
FAN05G3119 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.4e-293 1013.1 914 61.7
FAN05G5788 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.8e-293 1012.7 914 61.5
Potri.006G107500 Populus trichocarpa HOM05D003671 ORTHO05D004285 6.2e-286 987.6 910 61.9
Rhsim04G0122600 Rhododendron simsii HOM05D003671 ORTHO05D004285 3.1e-285 985.3 908 61.5
vmacro20357 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 1.3e-283 979.9 889 61.6
Gorai.005G122800 Gossypium raimondii HOM05D003671 ORTHO05D004285 1.9e-282 976.1 896 59.9
FvH4_6g10170 Fragaria vesca HOM05D003671 ORTHO05D004285 2.1e-281 972.6 914 61.2
FAN14G5445 Fragaria x ananassa HOM05D003671 ORTHO05D004285 3.0e-280 968.8 914 61.1
Dinv11386 Davidia involucrata HOM05D003671 ORTHO05D004285 4.0e-277 958.4 780 68.5
QL07p032733 Quercus lobata HOM05D003671 ORTHO05D004285 5.2e-277 958.0 872 64.6
Sabra06G0083600 Salix brachista HOM05D003671 ORTHO05D004285 3.8e-275 951.8 911 60.8
Gohir.D02G108300 Gossypium hirsutum HOM05D003671 ORTHO05D004285 2.7e-273 945.7 895 61.5
TWI77G0322 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 7.8e-273 944.1 908 59.4
Gohir.A03G087500 Gossypium hirsutum HOM05D003671 ORTHO05D004285 1.7e-272 943.0 896 61.5
Gorai.005G122900 Gossypium raimondii HOM05D003671 ORTHO05D004285 1.7e-272 943.0 895 61.3
CiPaw.10G164200 Carya illinoinensis HOM05D003671 ORTHO05D004285 1.9e-271 939.5 870 62.8
Sabra04G0151200 Salix brachista HOM05D003671 ORTHO05D004285 8.1e-270 934.1 910 59.9
Gohir.A03G088100 Gossypium hirsutum HOM05D003671 ORTHO05D004285 1.4e-269 933.3 895 60.8
Glyma.18G211200 Glycine max HOM05D003671 ORTHO05D004285 4.0e-269 931.8 909 59.3
MSTRG.18954 Avicennia marina HOM05D003671 ORTHO05D004285 6.9e-269 931.0 908 58.9
Cc06_g00530 Coffea canephora HOM05D003671 ORTHO05D004285 1.2e-268 930.2 893 60.0
Potri.016G133700 Populus trichocarpa HOM05D003671 ORTHO05D004285 3.4e-268 928.7 910 59.1
MD12G1185300 Malus domestica HOM05D003671 ORTHO05D004285 1.4e-266 923.3 913 59.4
Glyma.09G277700 Glycine max HOM05D003671 ORTHO05D004285 9.3e-266 920.6 912 58.9
CANSAT35G0504 Cannabis sativa HOM05D003671 ORTHO05D004285 2.7e-265 919.1 907 60.1
CsaV3_3G033210 Cucumis sativus L. HOM05D003671 ORTHO05D004285 1.3e-264 916.8 925 59.4
Eucgr.K01274 Eucalyptus grandis HOM05D003671 ORTHO05D004285 1.3e-264 916.8 895 59.1
MELO3C009114.2 Cucumis melo HOM05D003671 ORTHO05D004285 1.3e-262 910.2 925 59.1
ClCG10G022620 Citrullus lanatus HOM05D003671 ORTHO05D004285 3.6e-262 908.7 925 59.0
Lj1g0018847 Lotus japonicus HOM05D003671 ORTHO05D004285 4.8e-262 908.3 911 59.3
PGR004G1797 Punica granatum HOM05D003671 ORTHO05D004285 8.1e-262 907.5 895 57.0
FAN09G2383 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.8e-261 906.4 913 57.6
FAN02G1273 Fragaria x ananassa HOM05D003671 ORTHO05D004285 2.0e-260 902.9 913 58.3
Glyma.18G212400 Glycine max HOM05D003671 ORTHO05D004285 2.6e-260 902.5 911 59.7
Lalb_Chr19g0124051 Lupinus albus HOM05D003671 ORTHO05D004285 2.6e-260 902.5 909 58.5
TWI74G1343 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 1.7e-259 899.8 914 56.9
Glyma.09G277602 Glycine max HOM05D003671 ORTHO05D004285 1.4e-258 896.7 895 58.8
CiPaw.09G218900 Carya illinoinensis HOM05D003671 ORTHO05D004285 3.2e-258 895.6 910 59.1
Psat0s1450g0040 Pisum sativum HOM05D003671 ORTHO05D004285 3.9e-256 888.6 917 58.1
MD04G1172000 Malus domestica HOM05D003671 ORTHO05D004285 1.1e-255 887.1 911 58.5
Cpa.g.sc86.30 Carica papaya HOM05D003671 ORTHO05D004285 2.8e-254 882.5 802 63.0
Haze_21147 Corylus avellana HOM05D003671 ORTHO05D004285 3.7e-254 882.1 805 64.1
Haze_21142 Corylus avellana HOM05D003671 ORTHO05D004285 1.1e-253 880.6 805 64.0
Phvul.008G084500 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 1.2e-252 877.1 911 58.1
Medtr7g072520 Medicago truncatula HOM05D003671 ORTHO05D004285 4.5e-252 875.2 906 58.4
Sed0011007 Sechium edule HOM05D003671 ORTHO05D004285 4.5e-252 875.2 926 56.4
Phvul.008G084400 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 7.6e-252 874.4 911 57.7
Aqoxy2G00724 Aquilegia oxysepala HOM05D003671 ORTHO05D004285 4.9e-251 871.7 911 57.2
Lalb_Chr03g0043701 Lupinus albus HOM05D003671 ORTHO05D004285 4.9e-251 871.7 907 57.3
arahy.Tifrunner.gnm1.ann1.616PIC Arachis hypogaea HOM05D003671 ORTHO05D004285 9.3e-250 867.5 924 56.3
arahy.Tifrunner.gnm1.ann1.8XV151 Arachis hypogaea HOM05D003671 ORTHO05D004285 9.3e-250 867.5 924 56.3
TWI53G1222 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 1.2e-249 867.1 905 56.6
Ca_07746_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 1.8e-248 863.2 910 57.4
Lalb_Chr01g0023661 Lupinus albus HOM05D003671 ORTHO05D004285 2.3e-248 862.8 907 56.7
Lj3C942T7 Lonicera japonica HOM05D003671 ORTHO05D004285 3.9e-248 862.1 871 59.7
MSTRG.5514 Avicennia marina HOM05D003671 ORTHO05D004285 5.1e-248 861.7 909 56.2
SGA_v2.0_scaffold85G26648 Striga asiatica HOM05D003671 ORTHO05D004285 9.0e-245 850.9 915 54.4
Nitab4.5_0007794g0010 Nicotiana tabacum HOM05D003671 ORTHO05D004285 1.3e-243 847.0 907 55.9
Migut.J00060 Erythranthe guttata HOM05D003671 ORTHO05D004285 5.5e-242 841.6 910 55.1
SGA_v2.0_scaffold373G50172 Striga asiatica HOM05D003671 ORTHO05D004285 2.5e-239 832.8 909 55.9
Ca_07750_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 1.6e-238 830.1 870 57.8
VMungo1383G1272 Vigna mungo HOM05D003671 ORTHO05D004285 2.0e-236 823.2 873 56.9
Lj1g0001828 Lotus japonicus HOM05D003671 ORTHO05D004285 3.8e-235 818.9 913 55.2
Peaxi162Scf00595g00423 Petunia axillaris HOM05D003671 ORTHO05D004285 5.0e-235 818.5 892 55.8
TPR.G4424 Trifolium pratense HOM05D003671 ORTHO05D004285 2.5e-234 816.2 914 55.5
Nitab4.5_0002348g0020 Nicotiana tabacum HOM05D003671 ORTHO05D004285 1.2e-233 813.9 911 55.8
PSO384G1707 Papaver somniferum HOM05D003671 ORTHO05D004285 1.6e-233 813.5 911 56.0
CAN.G604.1 Capsicum annuum HOM05D003671 ORTHO05D004285 2.5e-231 806.2 908 53.1
PSO339G1890 Papaver somniferum HOM05D003671 ORTHO05D004285 4.3e-231 805.4 911 55.4
PGSC0003DMG400013061 Solanum tuberosum HOM05D003671 ORTHO05D004285 7.4e-231 804.7 892 55.7
Medtr7g072590 Medicago truncatula HOM05D003671 ORTHO05D004285 9.7e-231 804.3 871 56.0
Nitab4.5_0002204g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 4.5e-228 795.4 870 55.3
Hund03740 Selenicereus undatus HOM05D003671 ORTHO05D004285 2.2e-227 793.1 907 51.2
Ah.08g209720 Amaranthus hybridus HOM05D003671 ORTHO05D004285 3.2e-226 789.3 911 53.3
Sopen09g011320 Solanum pennellii HOM05D003671 ORTHO05D004285 6.1e-225 785.0 892 54.8
Solyc09g018310.4 Solanum lycopersicum HOM05D003671 ORTHO05D004285 7.9e-225 784.6 892 54.9
Oeu026963.1 Olea europaea HOM05D003671 ORTHO05D004285 1.7e-222 776.9 871 55.5
Lalb_Chr07g0190641 Lupinus albus HOM05D003671 ORTHO05D004285 3.5e-220 769.2 916 53.7
vmacro08928 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 1.7e-219 766.9 908 52.0
CAN.G15.24 Capsicum annuum HOM05D003671 ORTHO05D004285 3.8e-219 765.8 853 55.7
Gohir.D02G108200 Gossypium hirsutum HOM05D003671 ORTHO05D004285 5.5e-218 761.9 778 55.7
Nitab4.5_0000126g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 4.4e-215 752.3 873 55.0
EL10Ac7g17060 Beta vulgaris HOM05D003671 ORTHO05D004285 5.7e-215 751.9 912 52.6
THA.LOC104806637 Tarenaya hassleriana HOM05D003671 ORTHO05D004285 1.8e-213 746.9 872 53.3
ECA247G1347 Erigeron canadensis HOM05D003671 ORTHO05D004285 1.3e-211 740.7 910 53.7
Oeu060440.1 Olea europaea HOM05D003671 ORTHO05D004285 5.5e-210 735.3 853 54.7
AUR62029686 Chenopodium quinoa HOM05D003671 ORTHO05D004285 7.2e-210 734.9 874 52.9
MBI03_g38977_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 1.2e-209 734.2 917 52.6
Sc07g0005760 Simmondsia chinensis HOM05D003671 ORTHO05D004285 2.7e-209 733.0 914 52.5
DCAR_010961 Daucus carota HOM05D003671 ORTHO05D004285 8.0e-209 731.5 852 51.6
GSVIVG01030211001 Vitis vinifera HOM05D003671 ORTHO05D004285 2.0e-204 716.8 737 59.0
PSO675G2859 Papaver somniferum HOM05D003671 ORTHO05D004285 6.5e-203 711.8 847 53.7
Carub.0004s2047 Capsella rubella HOM05D003671 ORTHO05D004285 3.6e-201 706.1 904 51.0
DCAR_021427 Daucus carota HOM05D003671 ORTHO05D004285 5.2e-200 702.2 855 51.6
AT3G51640 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 2.6e-199 699.9 906 49.6
Aa31LG5G23820 Aethionema arabicum HOM05D003671 ORTHO05D004285 3.4e-199 699.5 906 50.2
Thhalv10016251m.g Eutrema salsugineum HOM05D003671 ORTHO05D004285 1.3e-198 697.6 904 50.4
AT3G51650 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 8.3e-198 694.9 906 48.6
PSO541G0005 Papaver somniferum HOM05D003671 ORTHO05D004285 3.8e-195 686.0 844 50.6
AL4G35770 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 3.3e-194 682.9 888 50.8
Oeu060446.2 Olea europaea HOM05D003671 ORTHO05D004285 4.0e-192 676.0 935 49.3
AL5G32090 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 4.3e-186 656.0 890 48.5
CARHR133180 Cardamine hirsuta HOM05D003671 ORTHO05D004285 1.2e-183 647.9 888 49.7
Sp4g20820 Schrenkiella parvula HOM05D003671 ORTHO05D004285 3.2e-181 639.8 853 49.1
BcaB01g00433 Brassica carinata HOM05D003671 ORTHO05D004285 4.1e-181 639.4 882 48.9
AUR62006358 Chenopodium quinoa HOM05D003671 ORTHO05D004285 3.0e-179 633.3 810 51.2
Nn5g26901 Nelumbo nucifera HOM05D003671 ORTHO05D004285 2.5e-178 630.2 643 61.7
Psat3g120920 Pisum sativum HOM05D003671 ORTHO05D004285 1.2e-177 627.9 876 48.6
BraA09t39938Z Brassica rapa HOM05D003671 ORTHO05D004285 1.4e-176 624.4 882 48.9
A09p44780 Brassica napus HOM05D003671 ORTHO05D004285 4.0e-176 622.9 869 48.8
BcaB01g00498 Brassica carinata HOM05D003671 ORTHO05D004285 2.6e-175 620.2 883 48.5
BolC8t50300H Brassica oleracea HOM05D003671 ORTHO05D004285 5.8e-175 619.0 883 48.1
unitig_699.g19370 Utricularia gibba HOM05D003671 ORTHO05D004285 2.9e-174 616.7 885 48.4
C08p26840 Brassica napus HOM05D003671 ORTHO05D004285 8.3e-174 615.1 870 48.5
BolC8t50298H Brassica oleracea HOM05D003671 ORTHO05D004285 1.1e-168 598.2 921 46.1
C08p26830 Brassica napus HOM05D003671 ORTHO05D004285 6.8e-168 595.5 904 45.9
BcaB01g00434 Brassica carinata HOM05D003671 ORTHO05D004285 9.9e-167 591.7 904 45.9
HPP92_018092 Vanilla planifolia HOM05D003671 ORTHO05D004285 4.6e-164 582.8 919 46.2
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 1.3e-163 581.3 773 50.7
CARHR161250 Cardamine hirsuta HOM05D003671 ORTHO05D004285 4.7e-161 572.8 780 47.6
A09p44750 Brassica napus HOM05D003671 ORTHO05D004285 1.2e-159 568.2 922 45.1
BraA09t39936Z Brassica rapa HOM05D003671 ORTHO05D004285 7.6e-159 565.5 927 45.1
TPR.G4425 Trifolium pratense HOM05D003671 ORTHO05D004285 1.7e-155 554.3 776 48.6
Peaxi162Scf00732g00447 Petunia axillaris HOM05D003671 ORTHO05D004285 3.0e-155 553.5 894 44.4
Lsat_1_v5_gn_8_119680 Lactuca sativa HOM05D003671 ORTHO05D004285 4.0e-144 516.5 754 47.6
CDE07G1826 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 1.8e-136 491.1 912 42.3
CDE04G0380 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 1.9e-133 481.1 907 42.2
ECA236G1062 Erigeron canadensis HOM05D003671 ORTHO05D004285 8.7e-131 472.2 916 42.1
HanXRQChr16g0510341 Helianthus annuus HOM05D003671 ORTHO05D004285 2.8e-129 467.2 905 42.7
Zm00001eb406310 Zea mays HOM05D003671 ORTHO05D004285 1.3e-126 458.4 929 42.0
Zm00001eb195220 Zea mays HOM05D003671 ORTHO05D004285 9.3e-125 452.2 937 42.2
Sed0014254 Sechium edule HOM05D003671 ORTHO05D004285 6.7e-123 446.0 449 58.4
Zm00001eb163960 Zea mays HOM05D003671 ORTHO05D004285 7.4e-122 442.6 938 40.8
Os11g0113200 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 1.7e-118 431.4 923 41.5
Os12g0112600 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 8.5e-118 429.1 923 41.3
HanXRQChr16g0510331 Helianthus annuus HOM05D003671 ORTHO05D004285 2.3e-115 421.0 755 44.1
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 2.0e-111 407.9 883 38.5
SpUn1372_0010 Schrenkiella parvula HOM05D003671 ORTHO05D004285 1.9e-101 374.8 404 56.7
SEGI_37069 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 3.8e-94 350.5 1008 35.3
ATR0012G011 Amborella trichopoda HOM05D003671 ORTHO05D004285 1.0e-91 342.4 959 35.0
ATR0681G108 Amborella trichopoda HOM05D003671 ORTHO05D004285 8.6e-78 296.2 426 48.4
VMungo1383G0904 Vigna mungo HOM05D003671 ORTHO05D004285 3.0e-75 287.7 318 50.6
Oeu060441.1 Olea europaea HOM05D003671 ORTHO05D004285 4.9e-73 280.4 365 46.3
SEGI_23390 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 1.9e-69 268.5 912 33.3
SEGI_27030 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 2.9e-65 254.6 297 48.8
AagrBONN_evm.TU.Sc2ySwM_344.630 Anthoceros agrestis HOM05D003671 ORTHO05D004285 1.1e-64 252.7 349 43.3
Oeu026958.1 Olea europaea HOM05D003671 ORTHO05D004285 1.7e-62 245.4 512 37.7
Mapoly0100s0047 Marchantia polymorpha HOM05D003671 ORTHO05D004285 5.2e-59 233.8 1108 29.6
Haze_23239 Corylus avellana HOM05D003671 ORTHO05D004285 1.1e-51 209.5 265 61.9
Pp3c12_1780 Physcomitrium patens HOM05D003671 ORTHO05D004285 1.2e-50 206.1 377 37.9
Sp5g10620 Schrenkiella parvula HOM05D003671 ORTHO05D004285 2.2e-49 201.8 318 40.3
CAN.G179.38 Capsicum annuum HOM05D003671 ORTHO05D004285 3.5e-47 194.5 230 48.7
SEGI_38845 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 6.0e-47 193.7 797 30.6
Sc02g0000840 Simmondsia chinensis HOM05D003671 ORTHO05D004285 8.7e-46 189.9 290 43.1
SEGI_35920 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 1.1e-43 183.0 177 55.9
TPR.G35754 Trifolium pratense HOM05D003671 ORTHO05D004285 2.9e-41 174.9 97 90.7
MBI03_g10316_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 3.2e-40 171.4 109 78.9
ATR0681G103 Amborella trichopoda HOM05D003671 ORTHO05D004285 4.6e-23 114.4 165 44.2
SEGI_26240 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 9.6e-21 106.7 317 28.1
MBI03_g10317_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D243544 1.8e-06 59.3 266 28.9
unitig_27.g24881 Utricularia gibba HOM05D003671 ORTHO05D004285 1.8e-06 59.3 40 62.5


User provided reference genes

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