Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G2654 Trochodendron aralioides HOM05D004766 ORTHO05D006159 0.0e+00 1295.8 645 100.0
Nn2g10346 Nelumbo nucifera HOM05D004766 ORTHO05D006159 1.9e-249 865.9 606 71.3
Nn5g26881 Nelumbo nucifera HOM05D004766 ORTHO05D006159 8.9e-247 857.1 641 69.9
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 1.9e-244 849.4 596 71.3
Dinv26060 Davidia involucrata HOM05D004766 ORTHO05D006159 3.1e-239 832.0 597 70.9
Ciclev10033572m.g Citrus clementina HOM05D004766 ORTHO05D006159 7.1e-236 820.8 639 66.2
GSVIVG01032703001 Vitis vinifera HOM05D004766 ORTHO05D006159 1.1e-233 813.5 600 69.3
QL08p064773 Quercus lobata HOM05D004766 ORTHO05D006159 5.3e-231 804.7 602 67.4
Lj8C56T7 Lonicera japonica HOM05D004766 ORTHO05D006159 6.9e-231 804.3 599 67.9
CSS0019433 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 9.0e-231 803.9 671 62.3
RcHm_v2.0_Chr1g0372121 Rosa chinensis HOM05D004766 ORTHO05D006159 2.9e-229 798.9 596 68.6
FvH4_7g25850 Fragaria vesca HOM05D004766 ORTHO05D006159 3.2e-228 795.4 596 68.3
MD07G1233000 Malus domestica HOM05D004766 ORTHO05D006159 9.3e-228 793.9 596 67.1
Actinidia29749 Actinidia chinensis HOM05D004766 ORTHO05D006159 6.0e-227 791.2 596 67.1
FAN06G4224 Fragaria x ananassa HOM05D004766 ORTHO05D006159 6.0e-227 791.2 596 67.8
FAN10G2197 Fragaria x ananassa HOM05D004766 ORTHO05D006159 6.7e-226 787.7 596 68.0
Manes.07G137600 Manihot esculenta HOM05D004766 ORTHO05D006159 1.9e-225 786.2 594 66.3
FAN03G3241 Fragaria x ananassa HOM05D004766 ORTHO05D006159 7.4e-225 784.3 596 67.4
Aqoxy4G02363 Aquilegia oxysepala HOM05D004766 ORTHO05D006159 9.6e-225 783.9 595 66.2
Atru.chr12.159 Acer truncatum HOM05D004766 ORTHO05D006159 1.2e-222 776.9 599 65.9
Prupe.2G263500 Prunus persica HOM05D004766 ORTHO05D006159 1.2e-222 776.9 596 66.4
MBI15_g35105_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D006159 1.0e-221 773.9 614 65.3
Haze_17351 Corylus avellana HOM05D004766 ORTHO05D006159 1.4e-220 770.0 623 63.7
Actinidia31615 Actinidia chinensis HOM05D004766 ORTHO05D006159 1.6e-219 766.5 596 65.4
CiPaw.01G306100 Carya illinoinensis HOM05D004766 ORTHO05D006159 1.6e-219 766.5 598 64.9
vmacro09973 Vaccinium macrocarpon HOM05D004766 ORTHO05D006159 6.0e-219 764.6 644 61.2
PSO384G4442 Papaver somniferum HOM05D004766 ORTHO05D006159 3.0e-218 762.3 604 65.2
Gohir.A13G007600 Gossypium hirsutum HOM05D004766 ORTHO05D006159 3.9e-218 761.9 601 64.1
Rhsim09G0184400 Rhododendron simsii HOM05D004766 ORTHO05D006159 6.7e-218 761.1 598 64.7
Cpa.g.sc19.83 Carica papaya HOM05D004766 ORTHO05D006159 1.1e-217 760.4 596 64.3
PGR142G0390 Punica granatum HOM05D004766 ORTHO05D006159 1.1e-217 760.4 593 63.4
Cc02_g05520 Coffea canephora HOM05D004766 ORTHO05D006159 4.3e-217 758.4 595 64.7
PSO339G1431 Papaver somniferum HOM05D004766 ORTHO05D006159 4.3e-217 758.4 604 64.4
Thecc.10G183900 Theobroma cacao HOM05D004766 ORTHO05D006159 7.4e-217 757.7 598 63.5
TWI09G0270 Tripterygium wilfordii HOM05D004766 ORTHO05D006159 1.3e-216 756.9 598 65.9
Duzib128G1614 Durio zibethinus HOM05D004766 ORTHO05D006159 2.1e-216 756.1 600 63.3
Gohir.D13G007700 Gossypium hirsutum HOM05D004766 ORTHO05D006159 2.1e-216 756.1 601 63.2
Potri.019G056200 Populus trichocarpa HOM05D004766 ORTHO05D006159 6.3e-216 754.6 597 63.8
MSTRG.178 Avicennia marina HOM05D004766 ORTHO05D006159 8.2e-216 754.2 595 63.0
Gorai.013G008100 Gossypium raimondii HOM05D004766 ORTHO05D006159 1.4e-215 753.4 601 62.9
Migut.F01258 Erythranthe guttata HOM05D004766 ORTHO05D006159 4.1e-215 751.9 593 62.4
arahy.Tifrunner.gnm1.ann1.4BS23W Arachis hypogaea HOM05D004766 ORTHO05D006159 2.0e-214 749.6 597 64.0
arahy.Tifrunner.gnm1.ann1.GHXG56 Arachis hypogaea HOM05D004766 ORTHO05D006159 3.4e-214 748.8 597 64.0
Ca_16870_v3 Cicer arietinum L. HOM05D004766 ORTHO05D006159 2.9e-213 745.7 598 64.0
Eucgr.J00130 Eucalyptus grandis HOM05D004766 ORTHO05D006159 3.8e-213 745.3 598 63.7
Oeu054426.2 Olea europaea HOM05D004766 ORTHO05D006159 3.2e-212 742.3 666 57.4
CANSAT56G1075 Cannabis sativa HOM05D004766 ORTHO05D006159 1.2e-211 740.3 597 64.2
Sabra19G0071700 Salix brachista HOM05D004766 ORTHO05D006159 1.6e-211 740.0 597 63.0
CAN.G169.5 Capsicum annuum HOM05D004766 ORTHO05D006159 1.3e-210 736.9 597 60.6
Phvul.009G142700 Phaseolus vulgaris HOM05D004766 ORTHO05D006159 3.9e-210 735.3 596 61.9
SGA_v2.0_scaffold275G46605 Striga asiatica HOM05D004766 ORTHO05D006159 1.1e-209 733.8 609 61.9
Ah.16g104280 Amaranthus hybridus HOM05D004766 ORTHO05D006159 2.5e-209 732.6 596 62.1
EL10Ac2g04254 Beta vulgaris HOM05D004766 ORTHO05D006159 9.7e-209 730.7 596 61.6
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 1.6e-208 729.9 596 62.4
TPR.G16138 Trifolium pratense HOM05D004766 ORTHO05D006159 6.3e-208 728.0 618 60.5
Glyma.04G222000 Glycine max HOM05D004766 ORTHO05D006159 8.2e-208 727.6 599 62.6
Glyma.06G143400 Glycine max HOM05D004766 ORTHO05D006159 1.4e-207 726.9 594 62.6
Nitab4.5_0003695g0010 Nicotiana tabacum HOM05D004766 ORTHO05D006159 6.9e-207 724.5 597 60.6
MELO3C020001.2 Cucumis melo HOM05D004766 ORTHO05D006159 9.1e-207 724.2 617 60.3
Nitab4.5_0000109g0520 Nicotiana tabacum HOM05D004766 ORTHO05D006159 3.4e-206 722.2 602 60.6
VMungo1309G2839 Vigna mungo HOM05D004766 ORTHO05D006159 5.0e-205 718.4 603 61.2
CsaV3_6G002240 Cucumis sativus L. HOM05D004766 ORTHO05D006159 8.5e-205 717.6 596 61.2
Medtr3g094070 Medicago truncatula HOM05D004766 ORTHO05D006159 1.9e-204 716.5 598 61.2
HanXRQChr08g0222571 Helianthus annuus HOM05D004766 ORTHO05D006159 7.9e-203 711.1 596 59.9
Lalb_Chr11g0067831 Lupinus albus HOM05D004766 ORTHO05D006159 1.8e-202 709.9 602 61.5
DCAR_010519 Daucus carota HOM05D004766 ORTHO05D006159 1.1e-201 707.2 596 60.7
THA.LOC104812375 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 1.5e-201 706.8 597 61.1
PGSC0003DMG400024309 Solanum tuberosum HOM05D004766 ORTHO05D006159 2.2e-200 703.0 597 60.0
Lalb_Chr08g0239111 Lupinus albus HOM05D004766 ORTHO05D006159 4.1e-199 698.7 604 60.8
AUR62031489 Chenopodium quinoa HOM05D004766 ORTHO05D006159 6.9e-199 698.0 598 60.5
Sed0017451 Sechium edule HOM05D004766 ORTHO05D006159 2.6e-198 696.0 594 61.3
Psat5g069120 Pisum sativum HOM05D004766 ORTHO05D006159 5.9e-198 694.9 600 60.0
AUR62012360 Chenopodium quinoa HOM05D004766 ORTHO05D006159 1.3e-197 693.7 596 59.9
SalBow5G3937 Salvia bowleyana HOM05D004766 ORTHO05D006159 8.5e-197 691.0 632 56.6
Aa31LG10G11180 Aethionema arabicum HOM05D004766 ORTHO05D006159 3.2e-196 689.1 596 59.6
ECA233G3027 Erigeron canadensis HOM05D004766 ORTHO05D006159 7.2e-196 688.0 597 58.8
HanXRQChr17g0560771 Helianthus annuus HOM05D004766 ORTHO05D006159 7.2e-196 688.0 596 57.7
Hma1.2p1_2838F.1_g329290 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 4.7e-195 685.3 535 65.6
BcaC02g07319 Brassica carinata HOM05D004766 ORTHO05D006159 7.9e-195 684.5 598 58.9
Sc10g0002920 Simmondsia chinensis HOM05D004766 ORTHO05D006159 3.0e-194 682.6 560 61.1
Thhalv10016414m.g Eutrema salsugineum HOM05D004766 ORTHO05D006159 3.9e-194 682.2 600 59.2
FAN01G2723 Fragaria x ananassa HOM05D004766 ORTHO05D006159 2.0e-193 679.9 557 63.6
THA.LOC104803295 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 4.4e-193 678.7 596 59.9
Lsat_1_v5_gn_8_13521 Lactuca sativa HOM05D004766 ORTHO05D006159 2.8e-192 676.0 597 59.1
ClCG11G005730 Citrullus lanatus HOM05D004766 ORTHO05D006159 4.8e-192 675.2 560 61.8
AL4G38400 Arabidopsis lyrata HOM05D004766 ORTHO05D006159 1.4e-191 673.7 598 58.0
AT2G40550 Arabidopsis thaliana HOM05D004766 ORTHO05D006159 1.8e-191 673.3 598 58.4
Actinidia33880 Actinidia chinensis HOM05D004766 ORTHO05D006159 9.1e-191 671.0 578 60.9
CARHR135660 Cardamine hirsuta HOM05D004766 ORTHO05D006159 1.6e-190 670.2 605 57.7
BcaB06g29150 Brassica carinata HOM05D004766 ORTHO05D006159 2.6e-190 669.5 598 57.2
Sp4g22880 Schrenkiella parvula HOM05D004766 ORTHO05D006159 5.9e-190 668.3 598 57.7
SpUn0061_0030 Schrenkiella parvula HOM05D004766 ORTHO05D006159 5.9e-190 668.3 598 57.7
Carub.0004s2277 Capsella rubella HOM05D004766 ORTHO05D006159 1.7e-189 666.8 598 57.7
A04p31000 Brassica napus HOM05D004766 ORTHO05D006159 2.8e-184 649.4 596 56.9
Lj1g0018162 Lotus japonicus HOM05D004766 ORTHO05D006159 2.8e-184 649.4 598 55.7
Cfa001212 Carpinus fangiana HOM05D004766 ORTHO05D006159 8.2e-184 647.9 505 65.5
C04p68390 Brassica napus HOM05D004766 ORTHO05D006159 4.1e-183 645.6 596 56.5
ATR0681G084 Amborella trichopoda HOM05D004766 ORTHO05D006159 7.0e-183 644.8 599 57.3
HPP92_018094 Vanilla planifolia HOM05D004766 ORTHO05D006159 2.5e-180 636.3 602 57.6
Os01g0166800 Oryza sativa ssp. japonica HOM05D004766 ORTHO05D006159 2.0e-177 626.7 601 54.6
Zm00001eb123270 Zea mays HOM05D004766 ORTHO05D006159 8.6e-173 611.3 604 52.3
MD01G1166300 Malus domestica HOM05D004766 ORTHO05D006159 9.8e-161 571.2 442 66.7
CDE12G0671 Ceratophyllum demersum HOM05D004766 ORTHO05D006159 1.7e-160 570.5 596 51.3
unitig_90.g27573 Utricularia gibba HOM05D004766 ORTHO05D006159 7.0e-159 565.1 622 49.4
BolC4t28340H Brassica oleracea HOM05D000154 ORTHO05D000092 5.0e-157 558.9 527 57.1
BraA04t18557Z Brassica rapa HOM05D000154 ORTHO05D000092 8.6e-157 558.1 527 56.9
Hma1.2p1_2838F.1_g329300 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 3.3e-156 556.2 419 68.7
SEGI_19414 Sequoiadendron giganteum HOM05D004766 ORTHO05D006159 6.8e-154 548.5 598 48.5
COL.COLO4_19454 Corchorus olitorius HOM05D004766 ORTHO05D006159 4.1e-143 512.7 467 57.4
C04p02090 Brassica napus HOM05D004766 ORTHO05D006159 2.3e-141 506.9 553 51.5
Sopen06g015640 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-140 504.6 525 52.2
TAR636G1150 Trochodendron aralioides HOM05D004766 ORTHO05D006159 2.2e-136 490.3 305 77.7
TAR636G0335 Trochodendron aralioides HOM05D004766 ORTHO05D006159 2.2e-128 463.8 280 85.0
Pp3c21_8640 Physcomitrium patens HOM05D004766 ORTHO05D006159 1.1e-127 461.5 620 43.4
SHI28878 Sapria himalayana HOM05D004766 ORTHO05D006159 3.5e-118 429.9 399 55.6
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 6.0e-118 429.1 579 42.8
SMO347G0133 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 3.7e-115 419.9 607 41.8
Mapoly0030s0020 Marchantia polymorpha HOM05D004766 ORTHO05D006159 2.0e-105 387.5 617 37.1
MD01G1183300 Malus domestica HOM05D004766 ORTHO05D006159 2.6e-105 387.1 412 55.1
SMO347G0333 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 5.8e-105 386.0 605 40.5
Dinv21784 Davidia involucrata HOM05D004766 ORTHO05D006159 2.5e-95 354.0 274 66.8
CBR_g29836 Chara braunii HOM05D004766 ORTHO05D006159 2.1e-94 350.9 623 37.4
Peaxi162Scf00739g00014 Petunia axillaris HOM05D004766 ORTHO05D006159 9.7e-92 342.0 249 68.7
BcaC02g12723 Brassica carinata HOM05D000154 ORTHO05D000092 1.0e-80 305.4 471 42.7
MCO09G187 Micromonas commoda HOM05D004766 ORTHO05D006159 1.4e-74 285.0 634 33.1
Solyc06g050200.2 Solanum lycopersicum HOM05D004766 ORTHO05D006159 6.7e-69 266.2 250 57.2
SalBow5G1700 Salvia bowleyana HOM05D004766 ORTHO05D006159 3.8e-64 250.4 368 41.8
Peaxi162Scf00739g00019 Petunia axillaris HOM05D004766 ORTHO05D006159 1.6e-57 228.4 285 43.5
CSS0047727 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 6.6e-56 223.0 287 47.0
BcaC02g12598 Brassica carinata HOM05D004766 ORTHO05D006159 9.5e-55 219.2 167 66.5
PRCOL_00003324 Prasinoderma coloniale HOM05D004766 ORTHO05D006159 5.7e-52 209.9 600 30.5
MD01G1166000 Malus domestica HOM05D004766 ORTHO05D006159 2.2e-51 208.0 131 68.7
HanXRQChr02g0033011 Helianthus annuus HOM05D004766 ORTHO05D006159 2.7e-41 174.5 129 56.6
BolC4t21721H Brassica oleracea HOM05D004766 ORTHO05D006159 1.6e-38 165.2 134 60.4
A05p01790 Brassica napus HOM05D004766 ORTHO05D006159 4.7e-38 163.7 128 64.8
BolC4t21857H Brassica oleracea HOM05D000154 ORTHO05D000092 7.5e-36 156.4 393 32.3
Solyc06g050180.3 Solanum lycopersicum HOM05D004766 ORTHO05D006159 9.8e-36 156.0 292 35.6
BraA05t19176Z Brassica rapa HOM05D004766 ORTHO05D006159 4.6e-33 147.1 116 65.5
AagrBONN_evm.TU.Sc2ySwM_228.73 Anthoceros agrestis HOM05D004766 ORTHO05D006159 3.6e-30 137.5 141 44.7
HanXRQChr03g0064211 Helianthus annuus HOM05D004766 ORTHO05D006159 2.6e-28 131.3 94 61.7
Cre01.g030150 Chlamydomonas reinhardtii HOM05D004766 ORTHO05D006159 1.0e-24 119.4 904 23.3
Nn1g07504 Nelumbo nucifera HOM05D004766 ORTHO05D006159 1.1e-23 115.9 84 69.0
SHI28879 Sapria himalayana HOM05D004766 ORTHO05D006159 4.4e-20 104.0 77 59.7
MBI11_g31297_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D000022 1.2e-17 95.9 108 48.1
AagrBONN_evm.TU.Sc2ySwM_336.9 Anthoceros agrestis HOM05D004766 ORTHO05D006159 8.7e-16 89.7 88 46.6
HanXRQChr15g0483741 Helianthus annuus HOM05D004766 ORTHO05D006159 1.4e-13 82.4 55 63.6
BcaC04g23924 Brassica carinata HOM05D004766 ORTHO05D039973 9.9e-12 76.3 42 73.8
A06p41130 Brassica napus HOM05D000061 ORTHO05D000050 9.9e-12 76.3 42 73.8
Peaxi162Scf00041g01211 Petunia axillaris HOM05D004766 ORTHO05D006159 1.7e-11 75.5 108 39.8
BraA06t27036Z Brassica rapa HOM05D000061 ORTHO05D000050 4.9e-11 73.9 41 73.2
BolC1t04291H Brassica oleracea HOM05D004766 ORTHO05D008768 8.4e-11 73.2 41 73.2
SHI28880 Sapria himalayana HOM05D004766 ORTHO05D006159 1.1e-10 72.8 60 56.7
C07p45160 Brassica napus HOM05D004766 ORTHO05D033383 1.4e-10 72.4 117 37.6
C09p32190 Brassica napus HOM05D004766 ORTHO05D008768 1.4e-10 72.4 117 37.6
COL.COLO4_19455 Corchorus olitorius HOM05D004766 ORTHO05D006159 2.8e-06 58.2 35 80.0


User provided reference genes

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