Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 3.0e-122 441.8 218 100.0
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 3.3e-100 368.6 218 82.1
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 2.8e-99 365.5 218 80.7
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 1.8e-98 362.8 217 78.8
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 1.2e-97 360.1 219 79.0
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 5.8e-97 357.8 218 80.3
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 9.8e-97 357.1 220 79.5
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 6.4e-96 354.4 219 79.9
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 1.1e-95 353.6 217 78.8
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.9e-95 352.8 220 78.2
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 3.2e-95 352.1 221 77.4
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 3.2e-95 352.1 221 78.3
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 2.0e-94 349.4 207 80.2
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 2.0e-94 349.4 226 77.0
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 2.0e-94 349.4 218 77.5
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 1.0e-93 347.1 219 78.1
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 3.0e-93 345.5 226 75.7
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 3.9e-93 345.1 220 77.7
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 5.0e-93 344.7 220 75.5
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 5.0e-93 344.7 220 75.5
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 1.9e-92 342.8 220 76.8
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 3.3e-92 342.0 220 76.8
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 7.3e-92 340.9 219 76.3
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 9.5e-92 340.5 218 75.2
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 9.5e-92 340.5 218 75.2
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.2e-91 340.1 220 75.9
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 1.6e-91 339.7 220 76.8
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 2.1e-91 339.3 221 75.1
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 2.8e-91 339.0 206 79.1
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 6.2e-91 337.8 220 75.0
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 8.1e-91 337.4 223 74.0
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 1.1e-90 337.0 223 73.5
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 1.4e-90 336.7 217 77.4
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 2.3e-90 335.9 220 76.8
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 3.1e-90 335.5 218 74.8
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 4.0e-90 335.1 220 76.4
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 5.2e-90 334.7 220 73.6
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 6.8e-90 334.3 221 74.2
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 1.2e-89 333.6 221 74.2
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 1.2e-89 333.6 220 73.2
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 2.0e-89 332.8 218 74.3
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 7.5e-89 330.9 225 68.4
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 9.8e-89 330.5 221 73.3
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 9.8e-89 330.5 222 73.0
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 9.8e-89 330.5 218 74.8
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 9.8e-89 330.5 216 74.1
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 3.7e-88 328.6 208 71.2
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 4.9e-88 328.2 218 71.6
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 8.3e-88 327.4 223 74.4
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 8.3e-88 327.4 223 71.7
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 2.4e-87 325.9 222 68.9
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 3.2e-87 325.5 220 74.1
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 3.2e-87 325.5 221 73.8
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 4.1e-87 325.1 221 71.9
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 5.4e-87 324.7 218 73.9
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 7.1e-87 324.3 224 71.0
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 7.1e-87 324.3 223 69.1
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 1.2e-86 323.6 222 72.5
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 1.6e-86 323.2 218 73.4
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 1.6e-86 323.2 217 73.3
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 2.1e-86 322.8 218 71.1
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 2.1e-86 322.8 217 73.7
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 2.1e-86 322.8 231 67.5
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 2.1e-86 322.8 231 66.2
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 2.7e-86 322.4 218 73.9
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 2.7e-86 322.4 231 67.5
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 6.0e-86 321.2 218 72.9
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 7.8e-86 320.9 221 71.0
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 1.7e-85 319.7 219 72.6
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 2.3e-85 319.3 221 70.6
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 2.3e-85 319.3 224 71.4
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 3.0e-85 318.9 220 71.4
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 3.0e-85 318.9 221 70.6
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 3.9e-85 318.5 211 72.0
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 3.9e-85 318.5 218 72.5
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 5.1e-85 318.2 245 66.9
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 6.6e-85 317.8 221 70.6
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 8.6e-85 317.4 221 70.6
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 8.6e-85 317.4 221 70.6
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 1.9e-84 316.2 218 72.0
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 2.5e-84 315.8 219 71.2
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 2.5e-84 315.8 219 71.2
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 2.5e-84 315.8 221 70.1
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 3.3e-84 315.5 223 68.2
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 7.3e-84 314.3 214 70.1
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 7.3e-84 314.3 224 71.4
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 7.3e-84 314.3 223 71.3
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 2.1e-83 312.8 227 67.8
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 1.8e-82 309.7 218 71.1
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 4.0e-82 308.5 217 68.2
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 1.5e-81 306.6 224 69.2
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 3.4e-81 305.4 223 67.3
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 5.8e-81 304.7 220 69.5
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 5.8e-81 304.7 227 68.3
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 5.8e-81 304.7 217 70.0
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 2.9e-80 302.4 216 66.2
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 4.9e-80 301.6 223 67.7
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 1.9e-79 299.7 320 53.1
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 2.4e-79 299.3 220 67.3
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 3.2e-79 298.9 221 65.2
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 3.2e-79 298.9 216 66.2
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 4.1e-79 298.5 224 64.7
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 7.1e-79 297.7 216 65.3
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 2.1e-78 296.2 352 48.0
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 2.7e-78 295.8 222 64.0
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 4.6e-78 295.0 216 64.8
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 1.3e-77 293.5 216 64.4
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 2.3e-77 292.7 219 65.3
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 5.1e-77 291.6 221 63.3
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 8.6e-77 290.8 216 63.9
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 4.3e-76 288.5 221 62.0
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 4.3e-76 288.5 219 64.8
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 5.6e-76 288.1 219 65.3
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 5.6e-76 288.1 308 52.3
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 1.2e-73 280.4 218 62.4
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 1.2e-73 280.4 221 64.7
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 1.9e-71 273.1 221 63.8
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 7.1e-71 271.2 215 61.9
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 1.2e-70 270.4 171 76.0
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 1.6e-70 270.0 218 61.5
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 1.3e-69 266.9 219 58.4
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 1.3e-67 260.4 218 57.8
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 1.1e-63 247.3 153 79.1
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 6.0e-62 241.5 221 57.0
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 5.1e-61 238.4 153 76.5
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 2.4e-58 229.6 152 73.7
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 4.5e-57 225.3 135 77.8
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 3.2e-55 219.2 122 91.0
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 5.5e-55 218.4 176 62.5
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 7.1e-55 218.0 152 71.1
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 1.5e-52 210.3 162 64.8
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 6.9e-50 201.4 217 50.2
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 5.8e-49 198.4 196 57.1
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 1.1e-47 194.1 130 72.3
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 4.2e-47 192.2 107 86.9
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 1.6e-43 180.3 111 78.4
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 1.6e-43 180.3 111 78.4
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 2.1e-43 179.9 112 75.0
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 6.9e-42 174.9 112 75.9
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 1.2e-41 174.1 99 82.8
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 2.1e-38 163.3 109 74.3
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 6.7e-37 158.3 112 67.0
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 1.3e-32 144.1 116 61.2
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 8.5e-32 141.4 191 36.6
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 2.5e-31 139.8 139 49.6
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 3.3e-28 129.4 88 70.5
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 5.0e-24 115.5 112 54.5
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 4.2e-23 112.5 102 56.9
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 4.4e-20 102.4 84 61.9
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 8.8e-13 78.2 57 66.7
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.7e-11 73.9 76 51.3
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 5.9e-09 65.5 61 50.8


User provided reference genes

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