Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G2572 Trochodendron aralioides HOM05D003064 ORTHO05D001733 1.4e-57 226.1 120 100.0
COL.COLO4_10451 Corchorus olitorius HOM05D003064 ORTHO05D001733 1.1e-33 146.7 116 71.6
Thecc.09G214600 Theobroma cacao HOM05D003064 ORTHO05D001733 1.4e-33 146.4 120 69.2
Haze_22990 Corylus avellana HOM05D003064 ORTHO05D001733 8.0e-32 140.6 111 69.4
Cfa009621 Carpinus fangiana HOM05D003064 ORTHO05D001733 1.4e-31 139.8 120 64.2
MBI13_g29645_MAGBIO Magnolia biondii HOM05D003064 ORTHO05D001733 1.4e-31 139.8 111 68.5
QL01p010317 Quercus lobata HOM05D003064 ORTHO05D001733 1.8e-31 139.4 119 64.7
Duzib168G1091 Durio zibethinus HOM05D003064 ORTHO05D001733 2.3e-31 139.0 120 65.0
TPR.G9574 Trifolium pratense HOM05D003064 ORTHO05D001733 1.5e-30 136.3 116 60.3
Ciclev10017225m.g Citrus clementina HOM05D003064 ORTHO05D001733 2.6e-30 135.6 112 64.3
arahy.Tifrunner.gnm1.ann1.0YUQ4V Arachis hypogaea HOM05D003064 ORTHO05D001733 5.7e-30 134.4 105 66.7
arahy.Tifrunner.gnm1.ann1.MW6VFJ Arachis hypogaea HOM05D003064 ORTHO05D001733 5.7e-30 134.4 105 66.7
Potri.003G216000 Populus trichocarpa HOM05D003064 ORTHO05D001733 5.7e-30 134.4 120 62.5
Ca_18172_v3 Cicer arietinum L. HOM05D003064 ORTHO05D001733 9.7e-30 133.7 116 62.1
Glyma.05G141600 Glycine max HOM05D003064 ORTHO05D001733 1.3e-29 133.3 117 61.5
CiPaw.13G171900 Carya illinoinensis HOM05D003064 ORTHO05D001733 2.2e-29 132.5 121 64.5
Glyma.08G097000 Glycine max HOM05D003064 ORTHO05D001733 4.8e-29 131.3 117 60.7
MD03G1010900 Malus domestica HOM05D003064 ORTHO05D001733 4.8e-29 131.3 120 60.8
Psat7g081160 Pisum sativum HOM05D003064 ORTHO05D001733 8.2e-29 130.6 111 61.3
Sabra03G0161100 Salix brachista HOM05D000664 ORTHO05D001733 8.2e-29 130.6 120 60.0
AUR62019204 Chenopodium quinoa HOM05D003064 ORTHO05D001733 1.1e-28 130.2 103 63.1
EL10Ac4g10343 Beta vulgaris HOM05D003064 ORTHO05D001733 1.4e-28 129.8 106 61.3
AUR62000034 Chenopodium quinoa HOM05D003064 ORTHO05D001733 2.4e-28 129.0 103 63.1
Phvul.002G181000 Phaseolus vulgaris HOM05D003064 ORTHO05D001733 2.4e-28 129.0 118 61.0
Potri.001G009300 Populus trichocarpa HOM05D003064 ORTHO05D001733 2.4e-28 129.0 120 60.8
Prupe.6G010800 Prunus persica HOM05D003064 ORTHO05D001733 3.1e-28 128.6 120 60.0
Ah.06g193080 Amaranthus hybridus HOM05D003064 ORTHO05D001733 4.1e-28 128.3 100 63.0
Atru.chr3.2225 Acer truncatum HOM05D003064 ORTHO05D001733 2.0e-27 125.9 115 62.6
Eucgr.B03629 Eucalyptus grandis HOM05D003064 ORTHO05D001733 3.5e-27 125.2 120 60.0
Manes.15G104400 Manihot esculenta HOM05D003064 ORTHO05D001733 4.5e-27 124.8 114 60.5
VMungo0251G1179 Vigna mungo HOM05D003064 ORTHO05D001733 4.5e-27 124.8 117 57.3
RcHm_v2.0_Chr5g0081381 Rosa chinensis HOM05D003064 ORTHO05D001733 3.8e-26 121.7 120 58.3
PGR102G1745 Punica granatum HOM05D003064 ORTHO05D001733 5.0e-26 121.3 119 60.5
Sabra01G0007200 Salix brachista HOM05D003064 ORTHO05D000001 6.5e-26 120.9 119 58.8
MD11G1012700 Malus domestica HOM05D003064 ORTHO05D001733 1.1e-25 120.2 120 56.7
CSS0011912 Camellia sinensis var. sinensis HOM05D003064 ORTHO05D001733 1.9e-25 119.4 114 61.4
Lalb_Chr07g0187611 Lupinus albus HOM05D003064 ORTHO05D001733 1.9e-25 119.4 117 56.4
CiPaw.12G019000 Carya illinoinensis HOM05D003064 ORTHO05D001733 7.2e-25 117.5 108 58.3
FvH4_3g44720 Fragaria vesca HOM05D003064 ORTHO05D001733 3.6e-24 115.2 112 57.1
Actinidia06296 Actinidia chinensis HOM05D003064 ORTHO05D001733 1.5e-22 109.8 100 61.0
DCAR_024359 Daucus carota HOM05D003064 ORTHO05D001733 2.6e-22 109.0 115 58.3
FAN21G0865 Fragaria x ananassa HOM05D000001 ORTHO05D010412 3.3e-22 108.6 84 69.0
FAN25G0198 Fragaria x ananassa HOM05D000001 ORTHO05D010412 1.1e-20 103.6 84 66.7
Lsat_1_v5_gn_2_101540 Lactuca sativa HOM05D003064 ORTHO05D001733 3.1e-20 102.1 103 51.5
Ciclev10018265m.g Citrus clementina HOM05D003064 ORTHO05D001733 1.0e-18 97.1 94 53.2
RcHm_v2.0_Chr5g0081421 Rosa chinensis HOM05D003064 ORTHO05D001733 1.5e-17 93.2 80 65.0
FAN11G2614 Fragaria x ananassa HOM05D003064 ORTHO05D001733 2.5e-17 92.4 63 73.0
FAN16G2075 Fragaria x ananassa HOM05D003064 ORTHO05D001733 7.2e-17 90.9 63 71.4
PSO339G2776 Papaver somniferum HOM05D003064 ORTHO05D001733 4.4e-14 81.6 114 45.6
TAR369G0713 Trochodendron aralioides HOM05D003064 ORTHO05D001733 1.6e-11 73.2 112 39.3
MELO3C000306.2 Cucumis melo HOM05D003064 ORTHO05D001733 3.5e-11 72.0 99 46.5
TWI38G0681 Tripterygium wilfordii HOM05D003064 ORTHO05D001733 4.5e-11 71.6 91 42.9
Haze_03274 Corylus avellana HOM05D003064 ORTHO05D001733 2.3e-10 69.3 96 42.7
Sc09g0000290 Simmondsia chinensis HOM05D003064 ORTHO05D001733 2.9e-10 68.9 90 46.7
Cfa010704 Carpinus fangiana HOM05D003064 ORTHO05D001733 5.0e-10 68.2 112 37.5
Manes.10G152800 Manihot esculenta HOM05D003064 ORTHO05D001733 5.0e-10 68.2 91 42.9
THA.LOC104811059 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 8.6e-10 67.4 94 37.2
Ca_03208_v3 Cicer arietinum L. HOM05D003064 ORTHO05D001733 1.1e-09 67.0 96 41.7
FvH4_3g44730 Fragaria vesca HOM05D003064 ORTHO05D001733 1.1e-09 67.0 108 36.1
TAR633G1282 Trochodendron aralioides HOM05D003064 ORTHO05D001733 1.1e-09 67.0 93 39.8
Lalb_Chr25g0283731 Lupinus albus HOM05D003064 ORTHO05D001733 1.5e-09 66.6 96 43.8
Prupe.6G010700 Prunus persica HOM05D003064 ORTHO05D001733 1.5e-09 66.6 104 38.5
CsaV3_7G031520 Cucumis sativus L. HOM05D003064 ORTHO05D001733 1.9e-09 66.2 96 42.7
Nn7g35954 Nelumbo nucifera HOM05D003064 ORTHO05D001733 1.9e-09 66.2 97 40.2
ClCG03G013980 Citrullus lanatus HOM05D003064 ORTHO05D001733 2.5e-09 65.9 103 42.7
CsaV3_1G042240 Cucumis sativus L. HOM05D003064 ORTHO05D001733 2.5e-09 65.9 92 45.7
Medtr2g062220 Medicago truncatula HOM05D003064 ORTHO05D001733 2.5e-09 65.9 96 40.6
Glyma.08G158500 Glycine max HOM05D003064 ORTHO05D001733 3.3e-09 65.5 96 42.7
Prupe.2G001900 Prunus persica HOM05D003064 ORTHO05D001733 3.3e-09 65.5 91 41.8
Sed0020809 Sechium edule HOM05D003064 ORTHO05D001733 3.3e-09 65.5 103 39.8
Atru.chr11.2712 Acer truncatum HOM05D003064 ORTHO05D001733 4.2e-09 65.1 97 42.3
ATR0598G068 Amborella trichopoda HOM05D003064 ORTHO05D001733 4.2e-09 65.1 97 42.3
MD11G1012600 Malus domestica HOM05D003064 ORTHO05D001733 4.2e-09 65.1 103 36.9
THA.LOC104807528 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 4.2e-09 65.1 94 37.2
Duzib150G0559 Durio zibethinus HOM05D003064 ORTHO05D001733 5.5e-09 64.7 96 42.7
FAN16G3363 Fragaria x ananassa HOM05D003064 ORTHO05D001733 5.5e-09 64.7 103 35.9
MD03G1010800 Malus domestica HOM05D003064 ORTHO05D001733 5.5e-09 64.7 90 40.0
ClCG09G003670 Citrullus lanatus HOM05D003064 ORTHO05D001733 7.2e-09 64.3 96 42.7
Migut.B01404 Erythranthe guttata HOM05D003064 ORTHO05D001733 7.2e-09 64.3 96 40.6
FAN21G3633 Fragaria x ananassa HOM05D003064 ORTHO05D001733 7.2e-09 64.3 103 35.9
Gohir.A13G213900 Gossypium hirsutum HOM05D003064 ORTHO05D001733 7.2e-09 64.3 94 38.3
Gohir.D13G217700 Gossypium hirsutum HOM05D003064 ORTHO05D001733 7.2e-09 64.3 94 38.3
Gorai.013G248300 Gossypium raimondii HOM05D003064 ORTHO05D001733 7.2e-09 64.3 94 38.3
Oeu060706.1 Olea europaea HOM05D003064 ORTHO05D001733 7.2e-09 64.3 96 42.7
TAR623G1618 Trochodendron aralioides HOM05D003064 ORTHO05D001733 7.2e-09 64.3 97 39.2
Aqoxy2G00087 Aquilegia oxysepala HOM05D003064 ORTHO05D001733 9.5e-09 63.9 98 38.8
FAN25G3035 Fragaria x ananassa HOM05D003064 ORTHO05D001733 1.2e-08 63.5 103 35.0
Lj3g0018900 Lotus japonicus HOM05D003064 ORTHO05D001733 1.2e-08 63.5 96 40.6
QL01p010327 Quercus lobata HOM05D003064 ORTHO05D001733 1.2e-08 63.5 94 41.5
CiPaw.13G172000 Carya illinoinensis HOM05D003064 ORTHO05D001733 1.6e-08 63.2 98 36.7
Nn2g15754 Nelumbo nucifera HOM05D003064 ORTHO05D001733 1.6e-08 63.2 92 40.2
MSTRG.17073 Avicennia marina HOM05D003064 ORTHO05D001733 2.1e-08 62.8 112 35.7
Duzib168G1332 Durio zibethinus HOM05D003064 ORTHO05D001733 2.8e-08 62.4 94 41.5
Glyma.15G267900 Glycine max HOM05D003064 ORTHO05D001733 3.6e-08 62.0 97 42.3
Gorai.004G017800 Gossypium raimondii HOM05D003064 ORTHO05D001733 3.6e-08 62.0 94 36.2
Sed0014538 Sechium edule HOM05D003064 ORTHO05D001733 3.6e-08 62.0 114 36.0
PSO339G6128 Papaver somniferum HOM05D003064 ORTHO05D001733 4.7e-08 61.6 93 38.7
PSO384G3054 Papaver somniferum HOM05D003064 ORTHO05D001733 4.7e-08 61.6 93 38.7
Gohir.D08G022500 Gossypium hirsutum HOM05D003064 ORTHO05D001733 6.1e-08 61.2 94 36.2
HanXRQChr02g0056621 Helianthus annuus HOM05D003064 ORTHO05D001733 6.1e-08 61.2 117 34.2
GSVIVG01001351001 Vitis vinifera HOM05D003064 ORTHO05D001733 6.1e-08 61.2 96 36.5
Gohir.A08G012000 Gossypium hirsutum HOM05D003064 ORTHO05D001733 8.0e-08 60.8 94 36.2
Phvul.008G217700 Phaseolus vulgaris HOM05D003064 ORTHO05D001733 8.0e-08 60.8 96 40.6
QL04p001663 Quercus lobata HOM05D003064 ORTHO05D001733 8.0e-08 60.8 85 42.4
TPR.G16147 Trifolium pratense HOM05D003064 ORTHO05D001733 8.0e-08 60.8 96 40.6
CSS0014301 Camellia sinensis var. sinensis HOM05D003064 ORTHO05D001733 1.0e-07 60.5 100 35.0
Phvul.005G042500 Phaseolus vulgaris HOM05D003064 ORTHO05D001733 1.0e-07 60.5 96 40.6
HPP92_004380 Vanilla planifolia HOM05D003064 ORTHO05D001733 1.0e-07 60.5 84 40.5
Hma1.2p1_0128F.1_g059830 Hydrangea macrophylla HOM05D003064 ORTHO05D001733 1.4e-07 60.1 84 44.0
Eucgr.J01788 Eucalyptus grandis HOM05D003064 ORTHO05D001733 1.8e-07 59.7 90 35.6
Glyma.02G258600 Glycine max HOM05D003064 ORTHO05D001733 1.8e-07 59.7 96 39.6
Thecc.09G214300 Theobroma cacao HOM05D003064 ORTHO05D001733 1.8e-07 59.7 94 37.2
VMungo0647G0318 Vigna mungo HOM05D003064 ORTHO05D001733 1.8e-07 59.7 96 40.6
Ciclev10017191m.g Citrus clementina HOM05D003064 ORTHO05D001733 2.3e-07 59.3 101 35.6
Potri.001G231300 Populus trichocarpa HOM05D003064 ORTHO05D001733 2.3e-07 59.3 98 35.7
Sed0021387 Sechium edule HOM05D003064 ORTHO05D001733 2.3e-07 59.3 100 41.0
LjContig00357g0022496 Lotus japonicus HOM05D003064 ORTHO05D001733 3.0e-07 58.9 93 41.9
AT5G19875 Arabidopsis thaliana HOM05D003064 ORTHO05D001733 4.0e-07 58.5 96 38.5
Glyma.14G053000 Glycine max HOM05D003064 ORTHO05D001733 4.0e-07 58.5 96 39.6
Rhsim07G0049500 Rhododendron simsii HOM05D003064 ORTHO05D001733 4.0e-07 58.5 93 38.7
Sed0005920 Sechium edule HOM05D003064 ORTHO05D001733 4.0e-07 58.5 96 38.5
Aqoxy1G00039 Aquilegia oxysepala HOM05D003064 ORTHO05D001733 5.2e-07 58.2 96 37.5
Potri.003G216100 Populus trichocarpa HOM05D003064 ORTHO05D001733 5.2e-07 58.2 106 36.8
Sp6g24510 Schrenkiella parvula HOM05D003064 ORTHO05D001733 5.2e-07 58.2 88 37.5
Medtr5g084240 Medicago truncatula HOM05D003064 ORTHO05D001733 6.8e-07 57.8 96 39.6
Aa31LG1G14330 Aethionema arabicum HOM05D003064 ORTHO05D001733 8.9e-07 57.4 93 34.4
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 8.9e-07 57.4 63 47.6
AL6G31410 Arabidopsis lyrata HOM05D003064 ORTHO05D001733 8.9e-07 57.4 91 37.4
Cpa.g.sc119.86 Carica papaya HOM05D003064 ORTHO05D001733 8.9e-07 57.4 100 34.0
MBI13_g29639_MAGBIO Magnolia biondii HOM05D003064 ORTHO05D001733 8.9e-07 57.4 84 44.0
Oeu032780.1 Olea europaea HOM05D003064 ORTHO05D001733 8.9e-07 57.4 107 34.6
PSO782G3341 Papaver somniferum HOM05D003064 ORTHO05D001733 8.9e-07 57.4 114 36.8
BcaC04g19388 Brassica carinata HOM05D003064 ORTHO05D001733 1.2e-06 57.0 96 34.4
C09p56240 Brassica napus HOM05D003064 ORTHO05D001733 1.2e-06 57.0 96 34.4
BolC9t58493H Brassica oleracea HOM05D003064 ORTHO05D001733 1.2e-06 57.0 96 34.4
Migut.N00578 Erythranthe guttata HOM05D003064 ORTHO05D001733 1.2e-06 57.0 92 37.0
Lalb_Chr10g0105471 Lupinus albus HOM05D003064 ORTHO05D001733 1.2e-06 57.0 99 41.4
C02p35760 Brassica napus HOM05D003064 ORTHO05D001733 1.5e-06 56.6 96 34.4
Lsat_1_v5_gn_6_50860 Lactuca sativa HOM05D003064 ORTHO05D001733 1.5e-06 56.6 99 38.4
BcaC03g15831 Brassica carinata HOM05D003064 ORTHO05D001733 2.0e-06 56.2 96 33.3
A03p09690 Brassica napus HOM05D003064 ORTHO05D001733 2.0e-06 56.2 96 36.5
Manes.03G089000 Manihot esculenta HOM05D003064 ORTHO05D001733 2.0e-06 56.2 92 40.2
Potri.009G024500 Populus trichocarpa HOM05D003064 ORTHO05D001733 2.0e-06 56.2 93 37.6
Sopen01g033250 Solanum pennellii HOM05D003064 ORTHO05D001733 2.0e-06 56.2 87 40.2
A10p19870 Brassica napus HOM05D003064 ORTHO05D001733 2.6e-06 55.8 96 34.4
BraA10t44062Z Brassica rapa HOM05D003064 ORTHO05D001733 2.6e-06 55.8 96 34.4
CAN.G1361.1 Capsicum annuum HOM05D003064 ORTHO05D001733 2.6e-06 55.8 104 38.5
FAN11G1424 Fragaria x ananassa HOM05D003064 ORTHO05D001733 2.6e-06 55.8 89 34.8
Oeu049545.1 Olea europaea HOM05D003064 ORTHO05D001733 2.6e-06 55.8 94 34.0
Haze_22989 Corylus avellana HOM05D003064 ORTHO05D001733 3.4e-06 55.5 86 39.5
arahy.Tifrunner.gnm1.ann1.ZL4T1U Arachis hypogaea HOM05D003064 ORTHO05D001733 4.4e-06 55.1 93 39.8
BcaB01g04824 Brassica carinata HOM05D003064 ORTHO05D001733 4.4e-06 55.1 96 35.4
BcaB01g04845 Brassica carinata HOM05D003064 ORTHO05D001733 4.4e-06 55.1 88 36.4
BolC3t13597H Brassica oleracea HOM05D003064 ORTHO05D001733 4.4e-06 55.1 96 35.4
BraA03t10285Z Brassica rapa HOM05D003064 ORTHO05D001733 4.4e-06 55.1 96 35.4
CARHR192990 Cardamine hirsuta HOM05D003064 ORTHO05D001733 4.4e-06 55.1 96 33.3
TPR.G32947 Trifolium pratense HOM05D003064 ORTHO05D001733 4.4e-06 55.1 92 39.1
BcaC04g19393 Brassica carinata HOM05D003064 ORTHO05D001733 5.7e-06 54.7 96 33.3
BolC9t58489H Brassica oleracea HOM05D003064 ORTHO05D001733 5.7e-06 54.7 96 33.3
Carub.0006s1824 Capsella rubella HOM05D003064 ORTHO05D001733 5.7e-06 54.7 91 36.3
Cc02_g26840 Coffea canephora HOM05D003064 ORTHO05D001733 5.7e-06 54.7 93 36.6
arahy.Tifrunner.gnm1.ann1.GF7MHW Arachis hypogaea HOM05D003064 ORTHO05D001733 7.5e-06 54.3 93 39.8
BcaB08g36562 Brassica carinata HOM05D003064 ORTHO05D001733 7.5e-06 54.3 96 33.3
PGSC0003DMG400028989 Solanum tuberosum HOM05D003064 ORTHO05D001733 9.8e-06 53.9 87 39.1


User provided reference genes

Program Settings