Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G2503 Trochodendron aralioides HOM05D005866 ORTHO05D007078 1.7e-71 272.7 156 100.0
Dinv14530 Davidia involucrata HOM05D005866 ORTHO05D007078 5.5e-49 198.0 129 80.6
Dinv35509 Davidia involucrata HOM05D005866 ORTHO05D007078 2.1e-48 196.1 129 79.8
TAR623G0986 Trochodendron aralioides HOM05D005866 ORTHO05D007078 1.8e-47 193.0 114 90.4
CiPaw.09G206400 Carya illinoinensis HOM05D005866 ORTHO05D007078 3.4e-43 178.7 129 71.3
Nn2g11373 Nelumbo nucifera HOM05D005866 ORTHO05D007078 3.8e-42 175.3 129 74.4
GSVIVG01034004001 Vitis vinifera HOM05D000012 ORTHO05D000567 6.5e-42 174.5 140 66.4
Atru.chr8.2203 Acer truncatum HOM05D005866 ORTHO05D007078 1.1e-38 163.7 146 59.6
Sabra06G0074300 Salix brachista HOM05D005866 ORTHO05D007078 9.7e-38 160.6 129 60.5
CSS0007949 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 3.7e-37 158.7 127 69.3
CSS0025068 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 3.7e-37 158.7 127 69.3
ClCG04G007220 Citrullus lanatus HOM05D005866 ORTHO05D007078 1.1e-36 157.1 129 65.1
ECA247G0127 Erigeron canadensis HOM05D005866 ORTHO05D007078 1.8e-36 156.4 129 63.6
Nitab4.5_0004912g0060 Nicotiana tabacum HOM05D005866 ORTHO05D007078 1.8e-36 156.4 146 56.8
Potri.006G096700 Populus trichocarpa HOM05D005866 ORTHO05D007078 1.8e-36 156.4 129 60.5
Cpa.g.sc56.117 Carica papaya HOM05D005866 ORTHO05D007078 5.3e-36 154.8 144 59.0
SGA_v2.0_scaffold85G26760 Striga asiatica HOM05D005866 ORTHO05D007078 2.6e-35 152.5 129 59.7
FAN14G3518 Fragaria x ananassa HOM05D005866 ORTHO05D007078 4.5e-35 151.8 144 58.3
FAN09G2814 Fragaria x ananassa HOM05D000012 ORTHO05D007078 7.7e-35 151.0 143 58.0
MELO3C003227.2 Cucumis melo HOM05D005866 ORTHO05D007078 1.0e-34 150.6 144 58.3
Thecc.05G021700 Theobroma cacao HOM05D005866 ORTHO05D007078 1.0e-34 150.6 123 66.7
CAN.G1297.4 Capsicum annuum HOM05D005866 ORTHO05D007078 1.7e-34 149.8 129 64.3
Duzib128G1899 Durio zibethinus HOM05D005866 ORTHO05D007078 2.2e-34 149.4 123 66.7
FvH4_6g11980 Fragaria vesca HOM05D005866 ORTHO05D007078 2.9e-34 149.1 142 57.7
FAN14G3397 Fragaria x ananassa HOM05D000012 ORTHO05D000567 2.9e-34 149.1 142 57.7
Lj2P1203T18 Lonicera japonica HOM05D005866 ORTHO05D007078 3.8e-34 148.7 147 55.8
RcHm_v2.0_Chr3g0463811 Rosa chinensis HOM05D005866 ORTHO05D007078 3.8e-34 148.7 144 57.6
Aqoxy1G00701 Aquilegia oxysepala HOM05D005866 ORTHO05D007078 6.5e-34 147.9 132 61.4
Lj2C80T14 Lonicera japonica HOM05D005866 ORTHO05D007078 8.5e-34 147.5 147 55.8
Sopen10g034540 Solanum pennellii HOM05D005866 ORTHO05D007078 1.1e-33 147.1 129 62.0
CsaV3_4G026010 Cucumis sativus L. HOM05D005866 ORTHO05D007078 1.4e-33 146.7 129 61.2
FAN02G1355 Fragaria x ananassa HOM05D005866 ORTHO05D007078 1.4e-33 146.7 142 57.0
MD04G1147400 Malus domestica HOM05D005866 ORTHO05D007078 1.4e-33 146.7 144 56.9
AT3G09050 Arabidopsis thaliana HOM05D005866 ORTHO05D007078 1.9e-33 146.4 129 59.7
FAN05G0379 Fragaria x ananassa HOM05D000012 ORTHO05D000567 1.9e-33 146.4 138 58.7
Manes.09G102400 Manihot esculenta HOM05D005866 ORTHO05D007078 1.9e-33 146.4 123 58.5
PGSC0003DMG400011090 Solanum tuberosum HOM05D005866 ORTHO05D007078 1.9e-33 146.4 129 61.2
Carub.0003s0821 Capsella rubella HOM05D005866 ORTHO05D007078 2.5e-33 146.0 129 58.1
Haze_20956 Corylus avellana HOM05D005866 ORTHO05D007078 3.2e-33 145.6 129 61.2
Peaxi162Scf00141g00718 Petunia axillaris HOM05D005866 ORTHO05D007078 3.2e-33 145.6 143 55.2
AUR62042946 Chenopodium quinoa HOM05D005866 ORTHO05D007078 4.2e-33 145.2 129 55.0
BcaC09g48050 Brassica carinata HOM05D005866 ORTHO05D007078 7.2e-33 144.4 129 60.5
Sc01g0006840 Simmondsia chinensis HOM05D005866 ORTHO05D007078 7.2e-33 144.4 125 57.6
vmacro08602 Vaccinium macrocarpon HOM05D005866 ORTHO05D007078 9.4e-33 144.1 130 60.0
Prupe.6G271100 Prunus persica HOM05D000012 ORTHO05D000567 1.2e-32 143.7 144 53.5
AL3G20110 Arabidopsis lyrata HOM05D005866 ORTHO05D007078 1.6e-32 143.3 129 58.9
CARHR083410 Cardamine hirsuta HOM05D005866 ORTHO05D007078 1.6e-32 143.3 129 58.1
Ciclev10012537m.g Citrus clementina HOM05D005866 ORTHO05D007078 1.6e-32 143.3 132 59.1
Cc06_g01630 Coffea canephora HOM05D005866 ORTHO05D007078 1.6e-32 143.3 108 69.4
Sp3g07500 Schrenkiella parvula HOM05D005866 ORTHO05D007078 1.6e-32 143.3 132 58.3
Thhalv10021354m.g Eutrema salsugineum HOM05D005866 ORTHO05D007078 2.7e-32 142.5 129 58.9
BraA01t04319Z Brassica rapa HOM05D005866 ORTHO05D007078 3.6e-32 142.1 129 58.9
Lsat_1_v5_gn_9_36061 Lactuca sativa HOM05D005866 ORTHO05D007078 3.6e-32 142.1 129 58.1
Nitab4.5_0000008g0810 Nicotiana tabacum HOM05D005866 ORTHO05D007078 3.6e-32 142.1 123 61.0
Gohir.A01G225500 Gossypium hirsutum HOM05D005866 ORTHO05D007078 4.6e-32 141.7 121 61.2
Nitab4.5_0001837g0050 Nicotiana tabacum HOM05D005866 ORTHO05D007078 6.1e-32 141.4 123 61.0
BcaC05g29639 Brassica carinata HOM05D005866 ORTHO05D007078 7.9e-32 141.0 129 57.4
unitig_578.g15896 Utricularia gibba HOM05D005866 ORTHO05D007078 1.0e-31 140.6 129 55.0
A05p39790 Brassica napus HOM05D005866 ORTHO05D007078 1.4e-31 140.2 129 57.4
BraA05t22763Z Brassica rapa HOM05D005866 ORTHO05D007078 1.4e-31 140.2 129 57.4
Gohir.D01G215200 Gossypium hirsutum HOM05D005866 ORTHO05D007078 1.4e-31 140.2 126 58.7
Sopen09g007090 Solanum pennellii HOM05D005866 ORTHO05D007078 1.8e-31 139.8 139 54.7
BolC1t05477H Brassica oleracea HOM05D005866 ORTHO05D007078 3.0e-31 139.0 129 58.9
CAN.G338.58 Capsicum annuum HOM05D005866 ORTHO05D007078 3.0e-31 139.0 126 59.5
Aa31LG3G1580 Aethionema arabicum HOM05D005866 ORTHO05D007078 3.9e-31 138.7 132 56.8
BcaC09g48005 Brassica carinata HOM05D005866 ORTHO05D007078 3.9e-31 138.7 130 57.7
C05p58830 Brassica napus HOM05D005866 ORTHO05D007078 3.9e-31 138.7 129 57.4
Glyma.07G145800 Glycine max HOM05D005866 ORTHO05D007078 6.7e-31 137.9 142 51.4
Lj3g0009346 Lotus japonicus HOM05D005866 ORTHO05D007078 6.7e-31 137.9 131 55.7
TWI74G1551 Tripterygium wilfordii HOM05D005866 ORTHO05D007078 8.8e-31 137.5 129 58.1
DCAR_015452 Daucus carota HOM05D005866 ORTHO05D007078 2.5e-30 136.0 127 60.6
Eucgr.B02792 Eucalyptus grandis HOM05D005866 ORTHO05D007078 2.5e-30 136.0 112 62.5
PGR031G2542 Punica granatum HOM05D005866 ORTHO05D007078 2.5e-30 136.0 128 62.5
Sed0005881 Sechium edule HOM05D005866 ORTHO05D007078 2.5e-30 136.0 129 56.6
TPR.G1580 Trifolium pratense HOM05D005866 ORTHO05D007078 2.5e-30 136.0 145 52.4
BolC5t34535H Brassica oleracea HOM05D005866 ORTHO05D007078 4.3e-30 135.2 129 55.8
COL.COLO4_14593 Corchorus olitorius HOM05D005866 ORTHO05D007078 4.3e-30 135.2 128 62.5
Glyma.18G197300 Glycine max HOM05D005866 ORTHO05D007078 5.7e-30 134.8 127 53.5
Lj1g0011685 Lotus japonicus HOM05D005866 ORTHO05D007078 5.7e-30 134.8 142 51.4
MSTRG.5595 Avicennia marina HOM05D005866 ORTHO05D007078 1.7e-29 133.3 112 62.5
Actinidia05342 Actinidia chinensis HOM05D005866 ORTHO05D007078 3.7e-29 132.1 105 65.7
Ah.12g060060 Amaranthus hybridus HOM05D005866 ORTHO05D007078 3.7e-29 132.1 121 56.2
Solyc10g085080.3 Solanum lycopersicum HOM05D005866 ORTHO05D007078 3.7e-29 132.1 145 53.8
EL10Ac6g13875 Beta vulgaris HOM05D005866 ORTHO05D007078 6.3e-29 131.3 112 58.9
VMungo0331G1214 Vigna mungo HOM05D005866 ORTHO05D007078 6.3e-29 131.3 131 52.7
AUR62025814 Chenopodium quinoa HOM05D005866 ORTHO05D007078 1.4e-28 130.2 129 51.9
arahy.Tifrunner.gnm1.ann1.Q1H550 Arachis hypogaea HOM05D005866 ORTHO05D007078 2.4e-28 129.4 142 52.1
Medtr7g067000 Medicago truncatula HOM05D005866 ORTHO05D007078 2.4e-28 129.4 145 51.7
Psat3g131120 Pisum sativum HOM05D005866 ORTHO05D007078 2.4e-28 129.4 145 50.3
VMungo1383G0141 Vigna mungo HOM05D005866 ORTHO05D007078 3.1e-28 129.0 142 50.0
Gorai.002G261300 Gossypium raimondii HOM05D005866 ORTHO05D007078 9.1e-28 127.5 107 62.6
THA.LOC104816219 Tarenaya hassleriana HOM05D005866 ORTHO05D007078 9.1e-28 127.5 111 61.3
Ca_07614_v3 Cicer arietinum L. HOM05D005866 ORTHO05D007078 1.5e-27 126.7 145 49.7
Nitab4.5_0000652g0170 Nicotiana tabacum HOM05D005866 ORTHO05D007078 1.5e-27 126.7 117 58.1
PSO339G5866 Papaver somniferum HOM05D005866 ORTHO05D007078 1.5e-27 126.7 107 59.8
PSO384G0902 Papaver somniferum HOM05D005866 ORTHO05D007078 1.5e-27 126.7 107 59.8
Hund02698 Selenicereus undatus HOM05D005866 ORTHO05D007078 1.5e-27 126.7 130 52.3
Psat7g247600 Pisum sativum HOM05D005866 ORTHO05D007078 3.4e-27 125.6 129 54.3
Solyc09g014215.2 Solanum lycopersicum HOM05D005866 ORTHO05D007078 3.4e-27 125.6 122 55.7
Phvul.008G107300 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 7.7e-27 124.4 142 47.2
Phvul.010G008600 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 7.7e-27 124.4 128 53.1
PGSC0003DMG400020319 Solanum tuberosum HOM05D005866 ORTHO05D007078 7.7e-27 124.4 120 55.8
CDE03G0505 Ceratophyllum demersum HOM05D005866 ORTHO05D007078 2.9e-26 122.5 128 53.9
Glyma.03G077300 Glycine max HOM05D005866 ORTHO05D007078 6.5e-26 121.3 111 59.5
CANSAT35G0638 Cannabis sativa HOM05D005866 ORTHO05D007078 8.5e-26 120.9 122 52.5
Lalb_Chr07g0193301 Lupinus albus HOM05D005866 ORTHO05D007078 8.5e-26 120.9 134 50.0
ATR0618G104 Amborella trichopoda HOM05D005866 ORTHO05D007078 2.5e-25 119.4 129 51.2
TPR.G5230 Trifolium pratense HOM05D005866 ORTHO05D007078 3.2e-25 119.0 129 52.7
BcaC09g48006 Brassica carinata HOM05D005866 ORTHO05D007078 5.5e-25 118.2 109 58.7
Migut.J00221 Erythranthe guttata HOM05D005866 ORTHO05D007078 1.2e-24 117.1 119 55.5
arahy.Tifrunner.gnm1.ann1.LP8IIZ Arachis hypogaea HOM05D005866 ORTHO05D007078 2.1e-24 116.3 127 52.8
ECA247G1841 Erigeron canadensis HOM05D005866 ORTHO05D007078 3.6e-24 115.5 93 65.6
Medtr4g015010 Medicago truncatula HOM05D005866 ORTHO05D007078 1.4e-23 113.6 129 49.6
Peaxi162Scf00009g01923 Petunia axillaris HOM05D005866 ORTHO05D007078 1.4e-23 113.6 93 63.4
Zm00001eb367320 Zea mays HOM05D005866 ORTHO05D007078 2.3e-23 112.8 126 49.2
Dinv37082 Davidia involucrata HOM05D005866 ORTHO05D007078 3.9e-23 112.1 96 63.5
arahy.Tifrunner.gnm1.ann1.QNAF0W Arachis hypogaea HOM05D005866 ORTHO05D007078 7.4e-22 107.8 128 50.0
Os01g0853000 Oryza sativa ssp. japonica HOM05D005866 ORTHO05D007078 7.4e-22 107.8 128 46.9
arahy.Tifrunner.gnm1.ann1.F83RTD Arachis hypogaea HOM05D005866 ORTHO05D007078 1.4e-20 103.6 132 44.7
arahy.Tifrunner.gnm1.ann1.T33YJ3 Arachis hypogaea HOM05D005866 ORTHO05D007078 1.4e-20 103.6 132 44.7
Actinidia01118 Actinidia chinensis HOM05D005866 ORTHO05D007078 5.3e-20 101.7 76 68.4
arahy.Tifrunner.gnm1.ann1.6JA19R Arachis hypogaea HOM05D005866 ORTHO05D007078 4.2e-17 92.0 101 50.5
AagrBONN_evm.TU.Sc2ySwM_117.2545 Anthoceros agrestis HOM05D005866 ORTHO05D007078 1.6e-11 73.6 136 35.3
Mapoly0004s0086 Marchantia polymorpha HOM05D005866 ORTHO05D007078 5.9e-11 71.6 136 34.6
Pp3c5_19930 Physcomitrium patens HOM05D005866 ORTHO05D007078 1.3e-10 70.5 137 33.6
SEGI_33363 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 2.9e-10 69.3 139 32.4
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 4.2e-09 65.5 134 33.6
SEGI_17473 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 2.3e-07 59.7 122 32.8


User provided reference genes

Program Settings