Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G2432 Trochodendron aralioides HOM05D006813 ORTHO05D414814 4.4e-112 407.9 196 100.0
TAR371G1040 Trochodendron aralioides HOM05D006813 ORTHO05D008657 1.8e-20 103.6 93 60.2
ATR0730G176 Amborella trichopoda HOM05D006813 ORTHO05D008657 3.7e-18 95.9 103 52.4
Dinv11496 Davidia involucrata HOM05D006813 ORTHO05D008657 1.4e-17 94.0 93 54.8
Glyma.19G026800 Glycine max HOM05D006813 ORTHO05D008657 9.0e-17 91.3 93 53.8
PGR004G2573 Punica granatum HOM05D006813 ORTHO05D008657 9.0e-17 91.3 103 48.5
Manes.02G049900 Manihot esculenta HOM05D006813 ORTHO05D008657 2.6e-16 89.7 136 40.4
VMungo0464G0720 Vigna mungo HOM05D006813 ORTHO05D008657 2.6e-16 89.7 93 52.7
Medtr6g013150 Medicago truncatula HOM05D006813 ORTHO05D008657 7.7e-16 88.2 93 49.5
Thecc.04G088600 Theobroma cacao HOM05D006813 ORTHO05D008657 7.7e-16 88.2 93 49.5
QL02p085115 Quercus lobata HOM05D006813 ORTHO05D008657 1.0e-15 87.8 93 51.6
MBI07_g46965_MAGBIO Magnolia biondii HOM05D006813 ORTHO05D008657 1.3e-15 87.4 93 51.6
Nn4g23302 Nelumbo nucifera HOM05D006813 ORTHO05D008657 1.3e-15 87.4 93 51.6
Atru.chr8.345 Acer truncatum HOM05D006813 ORTHO05D008657 1.7e-15 87.0 93 50.5
Cfa007604 Carpinus fangiana HOM05D006813 ORTHO05D008657 1.7e-15 87.0 93 50.5
CSS0034099 Camellia sinensis var. sinensis HOM05D006813 ORTHO05D008657 2.2e-15 86.7 93 51.6
Haze_14484 Corylus avellana HOM05D006813 ORTHO05D008657 2.2e-15 86.7 93 50.5
Lalb_Chr02g0159111 Lupinus albus HOM05D006813 ORTHO05D008657 2.2e-15 86.7 93 49.5
TWI34G0213 Tripterygium wilfordii HOM05D006813 ORTHO05D008657 2.2e-15 86.7 126 43.7
TWI34G0739 Tripterygium wilfordii HOM05D006813 ORTHO05D008657 2.2e-15 86.7 126 43.7
AUR62034457 Chenopodium quinoa HOM05D006813 ORTHO05D008657 5.0e-15 85.5 208 31.2
Gohir.A05G369200 Gossypium hirsutum HOM05D006813 ORTHO05D008657 5.0e-15 85.5 93 49.5
Lj2g0012161 Lotus japonicus HOM05D006813 ORTHO05D008657 5.0e-15 85.5 94 52.1
Solyc02g088350.4 Solanum lycopersicum HOM05D006813 ORTHO05D008657 5.0e-15 85.5 93 50.5
Duzib264G0095 Durio zibethinus HOM05D006813 ORTHO05D008657 8.5e-15 84.7 93 50.5
DCAR_025399 Daucus carota HOM05D006813 ORTHO05D008657 1.1e-14 84.3 93 50.5
PGSC0003DMG400001435 Solanum tuberosum HOM05D006813 ORTHO05D008657 1.1e-14 84.3 93 49.5
Nitab4.5_0000568g0240 Nicotiana tabacum HOM05D006813 ORTHO05D008657 1.9e-14 83.6 93 48.4
Sopen02g033040 Solanum pennellii HOM05D006813 ORTHO05D008657 1.9e-14 83.6 93 48.4
CSS0013443 Camellia sinensis var. sinensis HOM05D006813 ORTHO05D008657 2.5e-14 83.2 91 49.5
Lju41A8T104 Lonicera japonica HOM05D006813 ORTHO05D008657 2.5e-14 83.2 126 39.7
Actinidia01957 Actinidia chinensis HOM05D006813 ORTHO05D008657 4.2e-14 82.4 93 48.4
Nitab4.5_0001591g0010 Nicotiana tabacum HOM05D006813 ORTHO05D008657 4.2e-14 82.4 93 48.4
Psat1g069960 Pisum sativum HOM05D006813 ORTHO05D008657 4.2e-14 82.4 93 48.4
Potri.004G120900 Populus trichocarpa HOM05D006813 ORTHO05D008657 4.2e-14 82.4 95 47.4
Sc14g0006120 Simmondsia chinensis HOM05D006813 ORTHO05D008657 4.2e-14 82.4 93 46.2
arahy.Tifrunner.gnm1.ann1.DSSH0H Arachis hypogaea HOM05D006813 ORTHO05D008657 5.5e-14 82.0 95 48.4
GSVIVG01011472001 Vitis vinifera HOM05D006813 ORTHO05D008657 7.2e-14 81.6 93 47.3
Actinidia06110 Actinidia chinensis HOM05D006813 ORTHO05D008657 1.6e-13 80.5 93 47.3
EL10Ac2g03036 Beta vulgaris HOM05D006813 ORTHO05D008657 2.1e-13 80.1 93 46.2
CARHR152350 Cardamine hirsuta HOM05D006813 ORTHO05D008657 3.6e-13 79.3 74 55.4
CiPaw.03G021100 Carya illinoinensis HOM05D006813 ORTHO05D008657 3.6e-13 79.3 93 48.4
Ca_04860_v3 Cicer arietinum L. HOM05D006813 ORTHO05D002040 4.6e-13 79.0 120 39.2
MD09G1056700 Malus domestica HOM05D006813 ORTHO05D008657 6.1e-13 78.6 93 47.3
Rhsim10G0035200 Rhododendron simsii HOM05D006813 ORTHO05D008657 6.1e-13 78.6 127 40.9
THA.LOC104805490 Tarenaya hassleriana HOM05D006813 ORTHO05D008657 1.0e-12 77.8 93 45.2
HPP92_015887 Vanilla planifolia HOM05D006813 ORTHO05D008657 1.0e-12 77.8 93 46.2
HPP92_015897 Vanilla planifolia HOM05D006813 ORTHO05D008657 1.0e-12 77.8 93 46.2
CDE04G0700 Ceratophyllum demersum HOM05D006813 ORTHO05D008657 1.4e-12 77.4 93 47.3
HanXRQChr09g0264041 Helianthus annuus HOM05D006813 ORTHO05D008657 1.4e-12 77.4 103 44.7
Sabra04G0067300 Salix brachista HOM05D006813 ORTHO05D008657 1.8e-12 77.0 93 45.2
vmacro05678 Vaccinium macrocarpon HOM05D006813 ORTHO05D008657 2.3e-12 76.6 104 45.2
Cc07_g03730 Coffea canephora HOM05D006813 ORTHO05D008657 3.9e-12 75.9 94 43.6
Dinv33795 Davidia involucrata HOM05D006813 ORTHO05D008657 5.1e-12 75.5 39 87.2
ECA232G0359 Erigeron canadensis HOM05D006813 ORTHO05D008657 5.1e-12 75.5 103 43.7
Gohir.D04G046200 Gossypium hirsutum HOM05D006813 ORTHO05D008657 5.1e-12 75.5 39 87.2
Gorai.012G051400 Gossypium raimondii HOM05D006813 ORTHO05D008657 5.1e-12 75.5 39 87.2
CANSAT64G1527 Cannabis sativa HOM05D006813 ORTHO05D008657 6.7e-12 75.1 94 47.9
CAN.G206.184 Capsicum annuum HOM05D006813 ORTHO05D008657 1.5e-11 73.9 93 45.2
ClCG11G004590 Citrullus lanatus HOM05D006813 ORTHO05D008657 1.5e-11 73.9 93 46.2
FvH4_6g47790 Fragaria vesca HOM05D006813 ORTHO05D008657 2.0e-11 73.6 93 45.2
FAN14G3538 Fragaria x ananassa HOM05D006813 ORTHO05D008657 2.0e-11 73.6 93 45.2
Ciclev10013781m.g Citrus clementina HOM05D006813 ORTHO05D008657 2.5e-11 73.2 83 51.8
COL.COLO4_12242 Corchorus olitorius HOM05D006813 ORTHO05D008657 2.5e-11 73.2 39 84.6
Lsat_1_v5_gn_4_170001 Lactuca sativa HOM05D006813 ORTHO05D008657 4.3e-11 72.4 104 44.2
Glyma.13G060100 Glycine max HOM05D006813 ORTHO05D008657 5.7e-11 72.0 39 84.6
Phvul.004G032400 Phaseolus vulgaris HOM05D006813 ORTHO05D008657 5.7e-11 72.0 39 84.6
Zm00001eb214510 Zea mays HOM05D006813 ORTHO05D008657 5.7e-11 72.0 96 43.8
MELO3C022015.2 Cucumis melo HOM05D006813 ORTHO05D008657 9.7e-11 71.2 93 46.2
Zm00001eb057930 Zea mays HOM05D006813 ORTHO05D008657 9.7e-11 71.2 137 35.8
Aqoxy3G03517 Aquilegia oxysepala HOM05D006813 ORTHO05D008657 1.3e-10 70.9 39 84.6
FAN05G4860 Fragaria x ananassa HOM05D006813 ORTHO05D008657 1.3e-10 70.9 93 44.1
RcHm_v2.0_Chr2g0166981 Rosa chinensis HOM05D006813 ORTHO05D008657 1.3e-10 70.9 93 44.1
MSTRG.3341 Avicennia marina HOM05D006813 ORTHO05D008657 1.7e-10 70.5 93 47.3
CsaV3_5G038340 Cucumis sativus L. HOM05D006813 ORTHO05D008657 1.7e-10 70.5 93 45.2
AUR62018125 Chenopodium quinoa HOM05D006813 ORTHO05D008657 2.2e-10 70.1 39 82.1
MD17G1054200 Malus domestica HOM05D006813 ORTHO05D008657 2.8e-10 69.7 120 37.5
SGA_v2.0_scaffold154G37082 Striga asiatica HOM05D006813 ORTHO05D008657 6.3e-10 68.6 93 47.3
MBI07_g25549_MAGBIO Magnolia biondii HOM05D006813 ORTHO05D008657 8.2e-10 68.2 83 47.0
Os03g0758900 Oryza sativa ssp. japonica HOM05D006813 ORTHO05D008657 8.2e-10 68.2 93 39.8
Oeu023718.1 Olea europaea HOM05D006813 ORTHO05D008657 1.8e-09 67.0 93 44.1
PSO063G1088 Papaver somniferum HOM05D006813 ORTHO05D008657 1.8e-09 67.0 93 41.9
TPR.G26959 Trifolium pratense HOM05D006813 ORTHO05D008657 3.1e-09 66.2 39 76.9
PSO063G3583 Papaver somniferum HOM05D006813 ORTHO05D008657 5.3e-09 65.5 93 41.9
Peaxi162Scf00166g00933 Petunia axillaris HOM05D006813 ORTHO05D008657 5.3e-09 65.5 39 76.9
SalBow1G0723 Salvia bowleyana HOM05D006813 ORTHO05D008657 5.3e-09 65.5 93 43.0
SalBow1G5727 Salvia bowleyana HOM05D006813 ORTHO05D008657 5.3e-09 65.5 93 43.0
Migut.K01297 Erythranthe guttata HOM05D006813 ORTHO05D008657 9.1e-09 64.7 93 44.1
BcaC06g33677 Brassica carinata HOM05D006813 ORTHO05D008657 1.2e-08 64.3 96 39.6
SEGI_06128 Sequoiadendron giganteum HOM05D006813 ORTHO05D008657 1.2e-08 64.3 136 30.9
Hund13179 Selenicereus undatus HOM05D006813 ORTHO05D008657 1.5e-08 63.9 93 43.0
AL5G19100 Arabidopsis lyrata HOM05D006813 ORTHO05D008657 2.0e-08 63.5 54 64.8
arahy.Tifrunner.gnm1.ann1.GGC6H3 Arachis hypogaea HOM05D006813 ORTHO05D008657 2.6e-08 63.2 41 75.6
unitig_0.g2631 Utricularia gibba HOM05D004633 ORTHO05D005503 2.6e-08 63.2 82 45.1
Aa31LG2G4040 Aethionema arabicum HOM05D006813 ORTHO05D008657 3.4e-08 62.8 44 65.9
AT3G29185 Arabidopsis thaliana HOM05D006813 ORTHO05D008657 1.0e-07 61.2 40 72.5
Thhalv10004355m.g Eutrema salsugineum HOM05D006813 ORTHO05D008657 1.0e-07 61.2 40 72.5
Sp2g17800 Schrenkiella parvula HOM05D006813 ORTHO05D008657 2.2e-07 60.1 40 70.0
A06p40070 Brassica napus HOM05D006813 ORTHO05D008657 1.1e-06 57.8 40 67.5
C07p38090 Brassica napus HOM05D006813 ORTHO05D008657 1.1e-06 57.8 40 67.5
BolC7t44331H Brassica oleracea HOM05D006813 ORTHO05D008657 1.1e-06 57.8 40 67.5
BraA06t26922Z Brassica rapa HOM05D006813 ORTHO05D008657 1.1e-06 57.8 40 67.5
BcaC06g30887 Brassica carinata HOM05D006813 ORTHO05D008657 1.4e-06 57.4 41 65.9


User provided reference genes

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