Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 8.6e-105 383.6 191 100.0
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 2.6e-101 372.1 191 95.3
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 7.5e-101 370.5 191 93.7
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 1.7e-100 369.4 191 95.3
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 2.2e-100 369.0 191 94.2
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 2.9e-100 368.6 191 93.7
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 2.9e-100 368.6 191 93.2
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 3.7e-100 368.2 191 94.8
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 3.7e-100 368.2 191 93.2
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 6.4e-100 367.5 191 92.7
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 6.4e-100 367.5 191 93.2
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 6.4e-100 367.5 191 94.2
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 1.1e-99 366.7 190 95.3
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 1.1e-99 366.7 190 93.2
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 1.1e-99 366.7 190 93.2
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 2.4e-99 365.5 189 93.1
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 3.2e-99 365.2 191 93.2
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 3.2e-99 365.2 189 94.2
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 3.2e-99 365.2 191 92.1
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 7.0e-99 364.0 191 92.7
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 7.0e-99 364.0 191 91.6
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 7.0e-99 364.0 189 92.6
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 7.0e-99 364.0 191 91.1
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 7.0e-99 364.0 191 92.1
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 7.0e-99 364.0 191 91.6
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 9.2e-99 363.6 189 92.6
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 9.2e-99 363.6 189 93.1
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 9.2e-99 363.6 189 93.1
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 9.2e-99 363.6 189 93.1
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 1.2e-98 363.2 191 92.1
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 1.2e-98 363.2 191 91.1
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 1.6e-98 362.8 191 92.1
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 1.6e-98 362.8 191 92.1
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 1.6e-98 362.8 191 91.6
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 2.0e-98 362.5 191 92.1
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 2.0e-98 362.5 190 91.6
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 2.0e-98 362.5 189 92.1
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 2.7e-98 362.1 191 91.6
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 2.7e-98 362.1 189 92.6
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 4.6e-98 361.3 191 91.1
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 4.6e-98 361.3 189 92.6
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 6.0e-98 360.9 191 91.1
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 7.8e-98 360.5 191 92.1
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 7.8e-98 360.5 191 90.6
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 1.7e-97 359.4 189 92.1
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 1.7e-97 359.4 188 92.0
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 1.7e-97 359.4 195 92.3
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 2.3e-97 359.0 191 91.6
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 2.3e-97 359.0 191 90.6
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 2.3e-97 359.0 191 90.6
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 2.3e-97 359.0 191 90.6
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 3.0e-97 358.6 191 90.6
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 3.0e-97 358.6 191 90.6
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 3.9e-97 358.2 188 90.4
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 6.6e-97 357.5 191 90.1
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 6.6e-97 357.5 191 90.1
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 6.6e-97 357.5 191 90.1
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 6.6e-97 357.5 191 90.1
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 8.6e-97 357.1 189 91.0
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 1.1e-96 356.7 188 91.0
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 1.5e-96 356.3 188 91.5
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 1.9e-96 355.9 191 89.5
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 5.6e-96 354.4 191 89.5
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 1.2e-95 353.2 191 89.5
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 1.6e-95 352.8 191 89.5
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 1.6e-95 352.8 189 88.9
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 4.7e-95 351.3 188 91.5
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 6.2e-95 350.9 191 86.9
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 1.4e-94 349.7 201 87.1
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 1.4e-94 349.7 216 81.5
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 1.8e-94 349.4 191 85.9
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 1.8e-94 349.4 191 86.4
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 1.8e-94 349.4 191 86.4
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 1.8e-94 349.4 193 89.1
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 2.3e-94 349.0 201 85.6
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 5.2e-94 347.8 210 82.4
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 6.8e-94 347.4 191 85.3
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 1.5e-93 346.3 189 88.9
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 2.0e-93 345.9 198 86.4
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 5.8e-93 344.4 191 84.8
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 7.5e-93 344.0 183 89.6
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 2.2e-92 342.4 191 85.3
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 4.9e-92 341.3 188 86.7
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 6.4e-92 340.9 189 84.1
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 1.1e-91 340.1 232 75.4
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 1.1e-91 340.1 191 83.2
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 3.2e-91 338.6 191 82.2
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 4.1e-91 338.2 191 82.7
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 7.1e-91 337.4 214 79.0
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 1.2e-90 336.7 188 83.0
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 1.6e-90 336.3 188 83.0
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 3.5e-90 335.1 188 82.4
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 4.6e-90 334.7 188 82.4
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 6.0e-90 334.3 188 81.9
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.0e-89 333.6 189 82.5
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 1.3e-89 333.2 191 81.7
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 1.3e-89 333.2 189 82.5
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 3.9e-89 331.6 188 82.4
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 5.1e-89 331.3 191 80.1
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 4.7e-87 324.7 173 90.8
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 6.2e-87 324.3 191 79.1
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 1.4e-86 323.2 181 88.4
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 1.4e-86 323.2 181 88.4
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 4.4e-85 318.2 188 79.3
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 9.9e-85 317.0 173 87.3
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 1.7e-84 316.2 191 79.1
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 3.8e-84 315.1 188 77.7
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 2.1e-82 309.3 167 89.8
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 1.0e-81 307.0 160 93.1
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 1.4e-78 296.6 160 88.1
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 1.3e-76 290.0 161 87.6
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 8.4e-76 287.3 160 86.2
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 1.3e-73 280.0 171 81.9
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 8.1e-71 270.8 209 67.5
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 2.4e-67 259.2 188 67.6
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 2.0e-61 239.6 140 85.0
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 2.2e-60 236.1 188 62.8
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 4.2e-59 231.9 183 61.2
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 3.3e-56 222.2 206 52.4
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 5.6e-56 221.5 113 92.0
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 2.1e-55 219.5 149 74.5
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 3.4e-53 212.2 129 82.2
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 5.5e-51 204.9 112 86.6
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 2.1e-50 203.0 109 91.7
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 4.6e-50 201.8 109 91.7
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 2.3e-49 199.5 109 89.9
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 6.7e-49 198.0 106 83.0
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 1.9e-48 196.4 158 63.3
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 1.3e-39 167.2 82 93.9
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 8.2e-39 164.5 82 92.7
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 8.2e-39 164.5 82 91.5
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 5.9e-37 158.3 80 90.0
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 1.3e-36 157.1 83 86.7
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 2.5e-35 152.9 84 89.3
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 4.6e-34 148.7 74 91.9
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 5.1e-33 145.2 157 46.5
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 3.3e-32 142.5 81 87.7
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 5.7e-32 141.7 71 93.0
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 5.3e-30 135.2 71 84.5
Prupe.3G123900 Prunus persica HOM05D005009 ORTHO05D006203 9.4e-27 124.4 84 78.6
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 1.8e-25 120.2 68 79.4
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 8.8e-25 117.9 68 77.9
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 8.8e-25 117.9 68 77.9
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 1.0e-17 94.4 51 80.4
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 1.2e-16 90.9 47 83.0
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 2.5e-11 73.2 38 84.2
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 2.5e-11 73.2 38 84.2
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 2.5e-11 73.2 38 84.2
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 2.5e-11 73.2 38 84.2
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 3.2e-11 72.8 37 86.5


User provided reference genes

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