Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G2319 Trochodendron aralioides HOM05D006730 ORTHO05D008189 2.5e-259 898.3 456 100.0
TAR633G1963 Trochodendron aralioides HOM05D006730 ORTHO05D008189 1.6e-242 842.4 447 96.0
TAR633G0487 Trochodendron aralioides HOM05D006730 ORTHO05D008189 1.5e-235 819.3 447 93.3
Nn1g09713 Nelumbo nucifera HOM05D006730 ORTHO05D008189 4.1e-129 465.7 456 56.8
Cfa015217 Carpinus fangiana HOM05D006730 ORTHO05D008189 8.9e-108 394.8 528 46.4
Actinidia27097 Actinidia chinensis HOM05D006730 ORTHO05D008189 1.2e-107 394.4 536 45.1
Prupe.8G045700 Prunus persica HOM05D006730 ORTHO05D008189 3.9e-103 379.4 480 45.6
Cpa.g.sc9.329 Carica papaya HOM05D006730 ORTHO05D008189 9.5e-102 374.8 514 46.3
Ciclev10019155m.g Citrus clementina HOM05D006730 ORTHO05D008189 1.6e-101 374.0 503 46.5
QL10p052118 Quercus lobata HOM05D006730 ORTHO05D008189 2.1e-101 373.6 535 44.3
CiPaw.01G173600 Carya illinoinensis HOM05D006730 ORTHO05D008189 6.2e-101 372.1 421 51.5
Haze_01419 Corylus avellana HOM05D006730 ORTHO05D008189 1.2e-99 367.9 527 43.8
Atru.chr4.1340 Acer truncatum HOM05D006730 ORTHO05D008189 1.5e-99 367.5 544 44.5
MBI11_g10487_MAGBIO Magnolia biondii HOM05D006730 ORTHO05D008189 8.3e-98 361.7 474 47.9
MD04G1046800 Malus domestica HOM05D006730 ORTHO05D008189 3.5e-96 356.3 485 45.4
Manes.04G048400 Manihot esculenta HOM05D006730 ORTHO05D008189 1.3e-95 354.4 513 44.2
Sc19g0000330 Simmondsia chinensis HOM05D006730 ORTHO05D008189 3.3e-94 349.7 530 41.7
GSVIVG01038091001 Vitis vinifera HOM05D006730 ORTHO05D008189 1.2e-93 347.8 540 42.8
Hma1.2p1_0324F.1_g125720 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 4.4e-91 339.3 497 43.3
Hma1.2p1_3037F.1_g331960 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 9.9e-91 338.2 497 43.1
Duzib151G0982 Durio zibethinus HOM05D006730 ORTHO05D008189 4.9e-90 335.9 479 43.6
Sed0020880 Sechium edule HOM05D006730 ORTHO05D008189 5.4e-89 332.4 517 41.0
Dinv05091 Davidia involucrata HOM05D006730 ORTHO05D008189 2.1e-88 330.5 459 45.8
MELO3C015702.2 Cucumis melo HOM05D006730 ORTHO05D008189 3.0e-87 326.6 489 42.1
Thecc.04G171700 Theobroma cacao HOM05D006730 ORTHO05D008189 8.7e-87 325.1 475 43.2
CsaV3_7G002050 Cucumis sativus L. HOM05D006730 ORTHO05D008189 1.5e-86 324.3 496 41.3
ClCG09G018880 Citrullus lanatus HOM05D006730 ORTHO05D008189 9.6e-86 321.6 503 40.6
Potri.017G018300 Populus trichocarpa HOM05D006730 ORTHO05D008189 3.6e-85 319.7 489 42.1
Sabra06G0076300 Salix brachista HOM05D006730 ORTHO05D008189 8.1e-85 318.5 488 41.6
Sabra17G0012500 Salix brachista HOM05D006730 ORTHO05D008189 2.4e-84 317.0 493 42.2
vmacro21172 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 4.4e-83 312.8 537 40.2
Aa31LG1G25250 Aethionema arabicum HOM05D006730 ORTHO05D008189 5.8e-83 312.4 496 42.9
vmacro00655 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 2.2e-82 310.5 538 40.9
Lj3A110T20 Lonicera japonica HOM05D006730 ORTHO05D008189 1.4e-81 307.8 499 41.5
CANSAT56G2182 Cannabis sativa HOM05D006730 ORTHO05D008189 4.2e-81 306.2 446 40.8
TWI15G0430 Tripterygium wilfordii HOM05D006730 ORTHO05D008189 5.1e-79 299.3 509 38.9
Oeu002416.1 Olea europaea HOM05D006730 ORTHO05D008189 8.7e-79 298.5 442 44.8
FAN26G1825 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.1e-78 298.1 482 41.3
COL.COLO4_28380 Corchorus olitorius HOM05D006730 ORTHO05D008189 1.5e-78 297.7 476 41.4
Eucgr.A00038 Eucalyptus grandis HOM05D006730 ORTHO05D008189 3.3e-78 296.6 513 39.0
Gohir.D02G011000 Gossypium hirsutum HOM05D006730 ORTHO05D008189 9.6e-78 295.0 466 40.8
AL7G49300 Arabidopsis lyrata HOM05D006730 ORTHO05D008189 2.8e-77 293.5 517 41.6
FvH4_1g27220 Fragaria vesca HOM05D006730 ORTHO05D008189 2.8e-77 293.5 477 40.9
Lj3g0015132 Lotus japonicus HOM05D006730 ORTHO05D008189 6.2e-77 292.4 444 41.9
Lsat_1_v5_gn_5_69460 Lactuca sativa HOM05D006730 ORTHO05D008189 8.1e-77 292.0 455 39.8
Gorai.005G013400 Gossypium raimondii HOM05D006730 ORTHO05D008189 2.4e-76 290.4 467 40.9
CARHR138600 Cardamine hirsuta HOM05D006730 ORTHO05D008189 3.1e-76 290.0 506 39.7
FAN19G2476 Fragaria x ananassa HOM05D006730 ORTHO05D008189 4.0e-76 289.7 477 40.3
CSS0011413 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 6.9e-76 288.9 279 56.6
THA.LOC104805724 Tarenaya hassleriana HOM05D006730 ORTHO05D008189 4.5e-75 286.2 505 40.0
Nitab4.5_0001210g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 5.8e-75 285.8 526 37.3
Peaxi162Scf00180g00519 Petunia axillaris HOM05D006730 ORTHO05D008189 1.7e-74 284.3 519 38.2
RcHm_v2.0_Chr3g0487611 Rosa chinensis HOM05D006730 ORTHO05D008189 2.9e-74 283.5 480 40.2
arahy.Tifrunner.gnm1.ann1.S6BLSS Arachis hypogaea HOM05D006730 ORTHO05D008189 8.4e-74 282.0 464 39.7
Nitab4.5_0002782g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 8.4e-74 282.0 521 37.6
AUR62005936 Chenopodium quinoa HOM05D006730 ORTHO05D008189 1.1e-73 281.6 489 37.8
AUR62028127 Chenopodium quinoa HOM05D006730 ORTHO05D008189 4.2e-73 279.6 491 37.3
Carub.0007s3500 Capsella rubella HOM05D006730 ORTHO05D008189 2.1e-72 277.3 528 39.0
Medtr4g068005 Medicago truncatula HOM05D006730 ORTHO05D008189 2.1e-72 277.3 468 39.5
Nitab4.5_0001586g0210 Nicotiana tabacum HOM05D006730 ORTHO05D008189 2.1e-72 277.3 535 36.4
A05p16170 Brassica napus HOM05D006730 ORTHO05D008189 7.9e-72 275.4 451 40.6
Ca_03751_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 1.0e-71 275.0 506 37.0
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 1.0e-71 275.0 474 38.0
Ca_07546_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 3.0e-71 273.5 497 37.0
Glyma.12G050000 Glycine max HOM05D006730 ORTHO05D008189 3.0e-71 273.5 505 38.0
VMungo0647G1321 Vigna mungo HOM05D006730 ORTHO05D008189 2.5e-70 270.4 513 35.9
BraA05t20528Z Brassica rapa HOM05D006730 ORTHO05D008189 3.3e-70 270.0 455 39.3
arahy.Tifrunner.gnm1.ann1.PF62HI Arachis hypogaea HOM05D006730 ORTHO05D008189 7.4e-70 268.9 472 37.9
TPR.G34183 Trifolium pratense HOM05D006730 ORTHO05D008189 2.8e-69 266.9 506 37.0
AT5G40520 Arabidopsis thaliana HOM05D006730 ORTHO05D008189 8.1e-69 265.4 533 38.5
Sopen06g029510 Solanum pennellii HOM05D006730 ORTHO05D008189 1.1e-68 265.0 536 37.5
Solyc06g073160.4 Solanum lycopersicum HOM05D006730 ORTHO05D008189 1.8e-68 264.2 536 37.1
PGSC0003DMG400026917 Solanum tuberosum HOM05D006730 ORTHO05D008189 6.9e-68 262.3 536 36.9
VMungo0720G0522 Vigna mungo HOM05D006730 ORTHO05D008189 6.9e-68 262.3 512 35.4
Lalb_Chr03g0025971 Lupinus albus HOM05D006730 ORTHO05D008189 9.0e-68 261.9 499 37.7
Lalb_Chr03g0026031 Lupinus albus HOM05D006730 ORTHO05D008189 9.0e-68 261.9 499 37.7
PGR102G2296 Punica granatum HOM05D006730 ORTHO05D008189 9.0e-68 261.9 502 35.3
BcaC08g44345 Brassica carinata HOM05D006730 ORTHO05D008189 1.5e-67 261.2 459 39.0
C06p17830 Brassica napus HOM05D006730 ORTHO05D008189 2.0e-67 260.8 459 39.0
BolC6t36977H Brassica oleracea HOM05D006730 ORTHO05D008189 2.6e-67 260.4 459 39.0
Phvul.011G201600 Phaseolus vulgaris HOM05D006730 ORTHO05D008189 2.6e-67 260.4 513 36.3
Sp7g05120 Schrenkiella parvula HOM05D006730 ORTHO05D008189 5.8e-67 259.2 484 37.6
Psat7g208760 Pisum sativum HOM05D006730 ORTHO05D008189 3.5e-64 250.0 493 35.1
MSTRG.27276 Avicennia marina HOM05D006730 ORTHO05D008189 1.9e-62 244.2 546 35.2
Oeu029987.1 Olea europaea HOM05D006730 ORTHO05D008189 2.5e-62 243.8 362 42.8
EL10Ac9g22987 Beta vulgaris HOM05D006730 ORTHO05D008189 2.8e-61 240.4 490 35.3
Cc03_g12540 Coffea canephora HOM05D006730 ORTHO05D008189 3.1e-60 236.9 535 34.4
BcaB02g08030 Brassica carinata HOM05D006730 ORTHO05D008189 9.0e-60 235.3 473 36.4
Hund25530 Selenicereus undatus HOM05D006730 ORTHO05D008189 4.5e-59 233.0 413 37.8
SGA_v2.0_scaffold94G28623 Striga asiatica HOM05D006730 ORTHO05D008189 4.5e-59 233.0 505 36.0
CSS0007333 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 5.8e-59 232.6 277 48.4
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 8.4e-58 228.8 505 35.4
Thhalv10027675m.g Eutrema salsugineum HOM05D006730 ORTHO05D008189 1.9e-57 227.6 477 34.8
Gohir.A02G010500 Gossypium hirsutum HOM05D006730 ORTHO05D008189 3.2e-57 226.9 300 45.0
SHI01154 Sapria himalayana HOM05D006730 ORTHO05D008189 4.6e-56 223.0 440 36.4
HanXRQChr17g0565921 Helianthus annuus HOM05D006730 ORTHO05D008189 1.1e-52 211.8 449 34.3
CDE07G0581 Ceratophyllum demersum HOM05D006730 ORTHO05D008189 2.9e-50 203.8 449 33.6
ATR0743G243 Amborella trichopoda HOM05D006730 ORTHO05D008189 2.7e-48 197.2 313 39.9
SGA_v2.0_scaffold36G14479 Striga asiatica HOM05D000061 ORTHO05D008189 1.0e-47 195.3 450 34.2
FAN23G1889 Fragaria x ananassa HOM05D006730 ORTHO05D008189 2.0e-43 181.0 452 33.2
DCAR_027052 Daucus carota HOM05D006730 ORTHO05D008189 5.3e-36 156.4 217 43.3
FAN28G2072 Fragaria x ananassa HOM05D006730 ORTHO05D008189 5.3e-36 156.4 213 44.6
Ah.10g027080 Amaranthus hybridus HOM05D006730 ORTHO05D008189 1.7e-34 151.4 313 36.1
PSO017G5839 Papaver somniferum HOM05D006730 ORTHO05D008189 8.8e-31 139.0 399 31.3
Os09g0103200 Oryza sativa ssp. japonica HOM05D006730 ORTHO05D008189 4.8e-29 133.3 455 28.8
FAN28G2984 Fragaria x ananassa HOM05D006730 ORTHO05D008189 3.8e-26 123.6 248 37.5
unitig_26.g9736 Utricularia gibba HOM05D006730 ORTHO05D006349 6.5e-26 122.9 366 31.7
Zm00001eb184290 Zea mays HOM05D006730 ORTHO05D008189 7.2e-25 119.4 458 27.1
HPP92_022486 Vanilla planifolia HOM05D001064 ORTHO05D000885 1.5e-22 111.7 429 25.2
PSO063G4508 Papaver somniferum HOM05D006730 ORTHO05D008189 1.9e-17 94.7 290 31.4
HanXRQChr12g0385981 Helianthus annuus HOM05D006730 ORTHO05D008189 1.1e-12 79.0 111 40.5
SEGI_29361 Sequoiadendron giganteum HOM05D006730 ORTHO05D008189 1.6e-11 75.1 258 26.4


User provided reference genes

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