Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G2243 Trochodendron aralioides HOM05D003606 ORTHO05D004650 1.3e-279 966.1 628 100.0
Nn5g28763 Nelumbo nucifera HOM05D003606 ORTHO05D004650 1.7e-149 533.9 521 66.6
Ciclev10015115m.g Citrus clementina HOM05D003606 ORTHO05D004650 1.1e-145 521.2 518 61.0
PSO675G6796 Papaver somniferum HOM05D003606 ORTHO05D004650 2.4e-140 503.4 523 64.4
Sabra09G0042600 Salix brachista HOM05D003606 ORTHO05D004650 2.1e-139 500.4 516 66.3
Solyc03g112530.3 Solanum lycopersicum HOM05D003606 ORTHO05D004650 3.5e-139 499.6 519 64.2
Sopen03g031590 Solanum pennellii HOM05D003606 ORTHO05D004650 3.5e-139 499.6 519 64.2
PGSC0003DMG400018107 Solanum tuberosum HOM05D003606 ORTHO05D004650 3.5e-139 499.6 519 64.2
HanXRQChr17g0563081 Helianthus annuus HOM05D003606 ORTHO05D004650 1.3e-138 497.7 524 64.1
Nitab4.5_0001284g0090 Nicotiana tabacum HOM05D003606 ORTHO05D004650 3.0e-138 496.5 520 61.0
PSO541G2647 Papaver somniferum HOM05D003606 ORTHO05D004650 3.0e-138 496.5 522 63.8
Dinv09318 Davidia involucrata HOM05D003606 ORTHO05D004650 3.3e-137 493.0 521 65.5
SalBow4G1900 Salvia bowleyana HOM05D003606 ORTHO05D004650 9.6e-137 491.5 525 57.1
GSVIVG01032166001 Vitis vinifera HOM05D003606 ORTHO05D004650 1.3e-136 491.1 521 66.0
Cpa.g.sc19.249 Carica papaya HOM05D003606 ORTHO05D004650 2.1e-136 490.3 517 60.3
Actinidia02534 Actinidia chinensis HOM05D000009 ORTHO05D004650 2.8e-136 490.0 520 62.9
Dinv43413 Davidia involucrata HOM05D003606 ORTHO05D004650 6.2e-136 488.8 521 65.5
TWI32G0899 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 3.1e-135 486.5 521 64.7
ECA234G3512 Erigeron canadensis HOM05D003606 ORTHO05D004650 4.0e-135 486.1 524 63.2
Cc02_g29020 Coffea canephora HOM05D003606 ORTHO05D004650 5.3e-135 485.7 517 64.0
MELO3C023992.2 Cucumis melo HOM05D003606 ORTHO05D004650 6.9e-135 485.3 517 64.2
CsaV3_3G031990 Cucumis sativus L. HOM05D003606 ORTHO05D004650 6.9e-135 485.3 517 64.2
CDE02G3858 Ceratophyllum demersum HOM05D003606 ORTHO05D004650 4.5e-134 482.6 521 63.9
CAN.G338.7 Capsicum annuum HOM05D003606 ORTHO05D004650 7.6e-134 481.9 522 63.8
Lj3A990T71 Lonicera japonica HOM05D003606 ORTHO05D004650 6.4e-133 478.8 518 64.5
RcHm_v2.0_Chr1g0317321 Rosa chinensis HOM05D003606 ORTHO05D004650 6.4e-133 478.8 519 59.7
Sc23g0005910 Simmondsia chinensis HOM05D003606 ORTHO05D004650 1.9e-132 477.2 519 64.2
Rhsim07G0058400 Rhododendron simsii HOM05D003606 ORTHO05D004650 3.2e-132 476.5 520 64.8
THA.LOC104819092 Tarenaya hassleriana HOM05D003606 ORTHO05D004650 3.2e-132 476.5 521 57.0
CiPaw.05G162700 Carya illinoinensis HOM05D003606 ORTHO05D004650 4.2e-132 476.1 521 63.7
Ca_19553_v3 Cicer arietinum L. HOM05D003606 ORTHO05D004650 5.5e-132 475.7 516 58.9
HanXRQChr16g0524861 Helianthus annuus HOM05D003606 ORTHO05D004650 1.6e-131 474.2 518 63.9
AUR62029807 Chenopodium quinoa HOM05D003606 ORTHO05D004650 2.7e-131 473.4 544 57.2
Atru.chr11.2590 Acer truncatum HOM05D003606 ORTHO05D004650 4.6e-131 472.6 518 64.1
Potri.009G058000 Populus trichocarpa HOM05D003606 ORTHO05D004650 1.0e-130 471.5 516 64.1
Cfa010803 Carpinus fangiana HOM05D003606 ORTHO05D004650 1.3e-130 471.1 524 63.2
AUR62023088 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.3e-130 471.1 544 57.0
Sed0024972 Sechium edule HOM05D003606 ORTHO05D004650 1.3e-130 471.1 517 64.0
TWI34G0860 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 5.1e-130 469.2 521 63.7
vmacro13693 Vaccinium macrocarpon HOM05D003606 ORTHO05D004650 8.7e-130 468.4 513 65.1
CiPaw.05G024300 Carya illinoinensis HOM05D003606 ORTHO05D004650 1.1e-129 468.0 521 63.5
Gohir.D08G163700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 1.9e-129 467.2 522 63.4
Gohir.A08G142700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 2.5e-129 466.8 522 63.4
COL.COLO4_04879 Corchorus olitorius HOM05D003606 ORTHO05D004650 3.3e-129 466.5 522 63.2
Gorai.004G170600 Gossypium raimondii HOM05D003606 ORTHO05D004650 4.3e-129 466.1 522 63.2
Manes.10G139000 Manihot esculenta HOM05D003606 ORTHO05D004650 4.3e-129 466.1 514 64.4
Thecc.01G407200 Theobroma cacao HOM05D003606 ORTHO05D004650 4.3e-129 466.1 522 63.2
MD02G1305600 Malus domestica HOM05D003606 ORTHO05D004650 7.4e-129 465.3 347 83.0
FvH4_7g01500 Fragaria vesca HOM05D003606 ORTHO05D004650 1.3e-128 464.5 515 59.6
Medtr1g054300 Medicago truncatula HOM05D003606 ORTHO05D004650 1.6e-128 464.2 517 58.0
VMungo0464G1676 Vigna mungo HOM05D003606 ORTHO05D004650 1.6e-128 464.2 517 63.1
Lj5g0022697 Lotus japonicus HOM05D003606 ORTHO05D004650 2.1e-128 463.8 517 62.9
Glyma.16G165100 Glycine max HOM05D003606 ORTHO05D004650 2.8e-128 463.4 526 62.4
Duzib138G0203 Durio zibethinus HOM05D003606 ORTHO05D004650 3.7e-128 463.0 522 62.5
FAN01G0800 Fragaria x ananassa HOM05D003606 ORTHO05D004650 4.8e-128 462.6 349 80.2
FAN03G2659 Fragaria x ananassa HOM05D003606 ORTHO05D004650 4.8e-128 462.6 349 80.2
TPR.G14490 Trifolium pratense HOM05D003606 ORTHO05D004650 6.2e-128 462.2 518 57.7
MSTRG.2635 Avicennia marina HOM05D003606 ORTHO05D004650 1.1e-127 461.5 516 62.0
Eucgr.G03357 Eucalyptus grandis HOM05D003606 ORTHO05D004650 1.1e-127 461.5 521 62.6
FAN10G3084 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.1e-127 461.5 349 79.9
ATR0626G036 Amborella trichopoda HOM05D003606 ORTHO05D004650 1.8e-127 460.7 515 55.3
FAN06G2132 Fragaria x ananassa HOM05D003606 ORTHO05D004650 2.4e-127 460.3 349 74.8
Prupe.2G020500 Prunus persica HOM05D003606 ORTHO05D004650 5.3e-127 459.1 521 63.1
Haze_03155 Corylus avellana HOM05D003606 ORTHO05D004650 9.0e-127 458.4 520 62.9
Phvul.004G092500 Phaseolus vulgaris HOM05D003606 ORTHO05D004650 1.2e-126 458.0 517 62.1
PGR031G1688 Punica granatum HOM05D003606 ORTHO05D004650 1.5e-126 457.6 521 60.3
SGA_v2.0_scaffold1G00601 Striga asiatica HOM05D003606 ORTHO05D004650 2.0e-126 457.2 514 62.3
Lalb_Chr21g0315701 Lupinus albus HOM05D003606 ORTHO05D004650 4.5e-126 456.1 519 62.0
Lsat_1_v5_gn_4_31941 Lactuca sativa HOM05D003606 ORTHO05D004650 5.8e-126 455.7 519 63.0
DCAR_003761 Daucus carota HOM05D003606 ORTHO05D004650 1.3e-125 454.5 521 62.0
ClCG10G012220 Citrullus lanatus HOM05D003606 ORTHO05D004650 1.7e-125 454.1 532 59.8
Aqoxy2G00153 Aquilegia oxysepala HOM05D003606 ORTHO05D004650 3.8e-125 453.0 511 62.6
Migut.D00412 Erythranthe guttata HOM05D003606 ORTHO05D004650 6.5e-125 452.2 519 60.7
Glyma.02G080600 Glycine max HOM05D003606 ORTHO05D004650 6.5e-125 452.2 516 62.0
Nitab4.5_0012005g0010 Nicotiana tabacum HOM05D003606 ORTHO05D004650 1.1e-124 451.4 521 57.2
Psat6g110240 Pisum sativum HOM05D003606 ORTHO05D004650 1.1e-124 451.4 517 56.5
SGA_v2.0_scaffold138G35254 Striga asiatica HOM05D003606 ORTHO05D004650 6.0e-123 445.7 518 59.8
Peaxi162Scf00089g01530 Petunia axillaris HOM05D003606 ORTHO05D004650 5.1e-122 442.6 342 83.6
Ah.10g038660 Amaranthus hybridus HOM05D003606 ORTHO05D004650 7.4e-121 438.7 528 53.0
SEGI_00890 Sequoiadendron giganteum HOM05D003606 ORTHO05D004650 1.1e-119 434.9 348 78.7
Hund21610 Selenicereus undatus HOM05D003606 ORTHO05D004650 1.4e-119 434.5 548 54.6
CARHR265750 Cardamine hirsuta HOM05D003606 ORTHO05D004650 3.1e-119 433.3 520 56.9
MD17G1287700 Malus domestica HOM05D003606 ORTHO05D004650 1.5e-118 431.0 521 60.1
Thhalv10013442m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 7.7e-118 428.7 513 58.5
BcaB05g21983 Brassica carinata HOM05D003606 ORTHO05D004650 6.5e-117 425.6 516 57.9
BcaC03g14497 Brassica carinata HOM05D003606 ORTHO05D004650 1.4e-116 424.5 521 57.4
C02p19350 Brassica napus HOM05D003606 ORTHO05D004650 1.4e-116 424.5 521 57.4
BolC2t08070H Brassica oleracea HOM05D003606 ORTHO05D004650 1.4e-116 424.5 521 57.4
Os11g0594200 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 4.6e-115 419.5 347 79.5
Sp6g14980 Schrenkiella parvula HOM05D003606 ORTHO05D004650 1.0e-114 418.3 508 58.3
A02p11600 Brassica napus HOM05D003606 ORTHO05D004650 3.0e-114 416.8 521 56.8
BraA02t06222Z Brassica rapa HOM05D003606 ORTHO05D004650 3.0e-114 416.8 521 56.8
Oeu025828.1 Olea europaea HOM05D003606 ORTHO05D004650 5.1e-114 416.0 641 50.4
SHI00285 Sapria himalayana HOM05D003606 ORTHO05D004650 1.1e-113 414.8 384 67.7
Carub.0008s1298 Capsella rubella HOM05D003606 ORTHO05D004650 2.5e-113 413.7 513 57.5
AT5G52820 Arabidopsis thaliana HOM05D003606 ORTHO05D004650 7.4e-113 412.1 521 56.8
QL06p005538 Quercus lobata HOM05D003606 ORTHO05D004650 1.7e-112 411.0 482 61.0
arahy.Tifrunner.gnm1.ann1.V59V4E Arachis hypogaea HOM05D003606 ORTHO05D004650 2.8e-112 410.2 327 84.1
Aa31LG3G9060 Aethionema arabicum HOM05D003606 ORTHO05D004650 3.7e-112 409.8 521 55.9
AL8G27260 Arabidopsis lyrata HOM05D003606 ORTHO05D004650 4.8e-112 409.5 521 56.4
arahy.Tifrunner.gnm1.ann1.F9F3MK Arachis hypogaea HOM05D003606 ORTHO05D004650 4.1e-111 406.4 327 83.8
Zm00001eb297740 Zea mays HOM05D003606 ORTHO05D004650 4.1e-111 406.4 347 76.9
Os10g0104500 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 5.3e-111 406.0 347 78.7
arahy.Tifrunner.gnm1.ann1.GAUK41 Arachis hypogaea HOM05D003606 ORTHO05D004650 6.9e-111 405.6 327 83.5
arahy.Tifrunner.gnm1.ann1.ZXEF1Z Arachis hypogaea HOM05D003606 ORTHO05D004650 1.0e-109 401.7 327 70.9
AagrBONN_evm.TU.Sc2ySwM_344.4930 Anthoceros agrestis HOM05D003606 ORTHO05D004650 3.2e-108 396.7 511 56.0
Manes.07G008500 Manihot esculenta HOM05D003606 ORTHO05D004650 5.5e-108 396.0 514 58.2
Mapoly0082s0085 Marchantia polymorpha HOM05D003606 ORTHO05D004650 6.7e-106 389.0 347 76.1
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 2.0e-105 387.5 514 46.3
Pp3c1_35350 Physcomitrium patens HOM05D003606 ORTHO05D004650 3.7e-104 383.3 347 75.2
CBR_g38286 Chara braunii HOM05D003606 ORTHO05D004650 1.8e-103 380.9 347 63.1
Thhalv10025051m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 4.1e-103 379.8 364 61.3
AUR62009405 Chenopodium quinoa HOM05D003606 ORTHO05D004650 4.5e-102 376.3 295 83.4
PSO541G4704 Papaver somniferum HOM05D003606 ORTHO05D004650 1.0e-101 375.2 502 49.6
SGA_v2.0_scaffold90G27689 Striga asiatica HOM05D003606 ORTHO05D004650 1.0e-101 375.2 387 69.5
BcaNung04849 Brassica carinata HOM05D003606 ORTHO05D004650 2.9e-101 373.6 522 47.7
BolC9t59770H Brassica oleracea HOM05D003606 ORTHO05D004650 2.9e-101 373.6 522 47.7
CANSAT01G2566 Cannabis sativa HOM05D003606 ORTHO05D004650 8.5e-101 372.1 347 71.8
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 4.2e-100 369.8 518 49.4
C09p70260 Brassica napus HOM05D003606 ORTHO05D004650 5.5e-100 369.4 532 47.0
TPR.G7603 Trifolium pratense HOM05D003606 ORTHO05D004650 5.5e-100 369.4 335 68.7
BolC7t45366H Brassica oleracea HOM05D003606 ORTHO05D004650 3.9e-98 363.2 518 46.5
SMO259G0032 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 6.7e-98 362.5 365 60.5
BcaNung04664 Brassica carinata HOM05D003606 ORTHO05D004650 1.5e-97 361.3 517 46.2
BcaC06g33533 Brassica carinata HOM05D003606 ORTHO05D004650 3.1e-95 353.6 540 45.4
HPP92_026819 Vanilla planifolia HOM05D003606 ORTHO05D004650 7.0e-95 352.4 569 40.9
C07p48580 Brassica napus HOM05D003606 ORTHO05D004650 2.6e-94 350.5 518 47.1
BcaC04g20537 Brassica carinata HOM05D003606 ORTHO05D004650 3.7e-88 330.1 534 41.4
A10p29890 Brassica napus HOM05D003606 ORTHO05D004650 8.3e-88 328.9 532 42.5
MCO05G213 Micromonas commoda HOM05D003606 ORTHO05D004650 1.0e-85 322.0 344 56.4
Hund00228 Selenicereus undatus HOM05D003606 ORTHO05D004650 2.5e-84 317.4 320 61.9
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 1.3e-80 305.1 198 73.7
BcaC06g32566 Brassica carinata HOM05D003606 ORTHO05D004650 3.6e-75 287.0 344 48.8
COL.COLO4_04880 Corchorus olitorius HOM05D003606 ORTHO05D004650 2.2e-72 277.7 293 72.0
MD09G1280600 Malus domestica HOM05D003606 ORTHO05D004650 8.3e-72 275.8 436 49.3
PRCOL_00003575 Prasinoderma coloniale HOM05D003606 ORTHO05D004650 1.1e-71 275.4 370 50.8
BcaNung05838 Brassica carinata HOM05D003606 ORTHO05D004650 4.1e-71 273.5 345 45.5
HanXRQChr15g0491881 Helianthus annuus HOM05D003606 ORTHO05D004650 1.2e-70 271.9 190 70.5
Haze_26363 Corylus avellana HOM05D003606 ORTHO05D004650 1.3e-69 268.5 353 46.7
Cre01.g000600 Chlamydomonas reinhardtii HOM05D003606 ORTHO05D004650 2.5e-60 237.7 345 53.0
CSS0037178 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 2.6e-57 227.6 114 94.7
AUR62034729 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.0e-53 215.7 114 88.6
CSS0009389 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 1.9e-52 211.5 145 74.5
BraA10t45027Z Brassica rapa HOM05D003606 ORTHO05D004650 2.5e-52 211.1 368 43.5
BraA10t43107Z Brassica rapa HOM05D003606 ORTHO05D004650 4.0e-50 203.8 377 40.1
A10p10270 Brassica napus HOM05D003606 ORTHO05D004650 6.8e-50 203.0 170 70.0
Cfa026891 Carpinus fangiana HOM05D003606 ORTHO05D004650 2.5e-44 184.5 322 43.8
BolC9t57121H Brassica oleracea HOM05D003606 ORTHO05D004650 2.4e-42 177.9 162 56.2
C09p42410 Brassica napus HOM05D003606 ORTHO05D004650 1.5e-41 175.3 167 55.1
BcaC06g33525 Brassica carinata HOM05D003606 ORTHO05D004650 2.9e-40 171.0 114 69.3
Manes.07G009860 Manihot esculenta HOM05D003606 ORTHO05D004650 2.4e-39 167.9 84 90.5
Medtr0421s0030 Medicago truncatula HOM05D003606 ORTHO05D004650 1.7e-37 161.8 99 78.8
Sc03g0002540 Simmondsia chinensis HOM05D003606 ORTHO05D004650 2.4e-34 151.4 244 40.6
BcaNung04851 Brassica carinata HOM05D003606 ORTHO05D004650 9.9e-33 146.0 104 68.3
BraA10t45028Z Brassica rapa HOM05D003606 ORTHO05D004650 1.7e-32 145.2 95 72.6
Oeu060950.1 Olea europaea HOM05D003606 ORTHO05D016710 2.8e-27 127.9 180 44.4
TAR636G3369 Trochodendron aralioides HOM05D003606 ORTHO05D003127 8.1e-27 126.3 270 35.6
MD09G1280700 Malus domestica HOM05D003606 ORTHO05D004650 3.4e-25 120.9 77 75.3
CSS0038697 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D016710 9.9e-25 119.4 55 94.5
SalBow4G2833 Salvia bowleyana HOM05D003606 ORTHO05D004650 1.2e-22 112.5 295 36.6
COL.COLO4_24393 Corchorus olitorius HOM05D003606 ORTHO05D004650 1.1e-18 99.4 114 49.1
SMO259G0025 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 4.0e-18 97.4 49 81.6
CANSAT51G0014 Cannabis sativa HOM05D003606 ORTHO05D004650 1.7e-16 92.0 83 56.6
GSVIVG01032170001 Vitis vinifera HOM05D003606 ORTHO05D004650 1.4e-15 89.0 59 71.2
Eucgr.G03354 Eucalyptus grandis HOM05D003606 ORTHO05D004650 1.9e-15 88.6 113 48.7
BcaC01g02187 Brassica carinata HOM05D003606 ORTHO05D016710 4.2e-15 87.4 120 61.7
QL06p005531 Quercus lobata HOM05D011240 ORTHO05D014254 2.7e-14 84.7 40 95.0
TAR636G2756 Trochodendron aralioides HOM05D003606 ORTHO05D004650 4.6e-14 84.0 39 97.4
CSS0009074 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 1.8e-13 82.0 43 86.0
CSS0037126 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 1.8e-13 82.0 43 86.0
Eucgr.G03346 Eucalyptus grandis HOM05D003606 ORTHO05D004650 1.9e-12 78.6 41 85.4
C02p14020 Brassica napus HOM05D003606 ORTHO05D016710 3.3e-12 77.8 164 31.7
Hund00229 Selenicereus undatus HOM05D003606 ORTHO05D004650 9.6e-12 76.3 39 87.2
TPR.G8471 Trifolium pratense HOM05D003606 ORTHO05D004650 3.1e-10 71.2 49 69.4
BolC2t07520H Brassica oleracea HOM05D003606 ORTHO05D016710 4.1e-10 70.9 47 59.6
TPR.G39665 Trifolium pratense HOM05D003606 ORTHO05D033191 5.3e-10 70.5 48 66.7
Oeu060951.1 Olea europaea HOM05D003606 ORTHO05D004650 5.8e-09 67.0 35 82.9
CSS0046585 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 1.0e-08 66.2 53 64.2
C09p42400 Brassica napus HOM05D003606 ORTHO05D033191 2.2e-08 65.1 50 60.0
BolC9t57120H Brassica oleracea HOM05D003606 ORTHO05D033191 2.2e-08 65.1 50 60.0
THA.LOC104821238 Tarenaya hassleriana HOM05D002634 ORTHO05D003100 1.4e-07 62.4 188 24.5
Pp3c14_5700 Physcomitrium patens HOM05D009278 ORTHO05D002685 4.6e-06 57.4 41 56.1
A07p16570 Brassica napus HOM05D002634 ORTHO05D003100 6.1e-06 57.0 74 35.1
Cre08.g367650 Chlamydomonas reinhardtii HOM05D009278 ORTHO05D002685 7.9e-06 56.6 41 63.4


User provided reference genes

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