Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 3.0e-238 828.2 438 100.0
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 8.9e-190 667.2 437 81.5
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 4.1e-187 658.3 452 79.0
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 2.1e-183 646.0 432 80.8
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 4.7e-183 644.8 432 80.6
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 4.0e-182 641.7 444 76.8
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 9.9e-181 637.1 429 79.5
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 1.1e-179 633.6 437 78.3
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 3.2e-179 632.1 438 75.1
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 2.1e-178 629.4 435 76.3
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 6.0e-178 627.9 439 76.3
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 6.0e-178 627.9 439 74.7
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 1.0e-177 627.1 438 74.7
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.5e-176 622.5 433 76.9
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 2.5e-176 622.5 438 74.9
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 2.8e-175 619.0 437 74.6
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 8.1e-175 617.5 438 74.7
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 2.4e-174 615.9 441 74.1
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 5.3e-174 614.8 428 77.8
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 2.0e-173 612.8 438 73.5
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 2.6e-173 612.5 436 74.1
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 4.9e-172 608.2 436 74.8
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 4.9e-172 608.2 435 74.9
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 2.4e-171 605.9 429 76.2
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 3.2e-171 605.5 438 73.5
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 3.5e-170 602.1 439 72.0
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 1.3e-169 600.1 435 73.6
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 9.6e-168 594.0 435 72.6
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.3e-167 593.6 435 71.7
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 3.6e-167 592.0 435 72.0
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 8.1e-167 590.9 435 72.9
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 1.1e-166 590.5 435 72.6
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.4e-166 590.1 435 71.5
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 1.4e-166 590.1 440 72.5
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 1.5e-165 586.6 434 71.4
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 1.5e-165 586.6 431 72.9
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 3.4e-165 585.5 434 71.4
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 1.7e-164 583.2 436 70.9
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 4.9e-164 581.6 430 71.4
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 1.9e-163 579.7 435 69.7
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 4.2e-163 578.6 435 72.2
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 5.4e-163 578.2 438 72.6
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 1.2e-162 577.0 435 72.0
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 1.6e-162 576.6 442 69.9
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 1.6e-162 576.6 429 69.0
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 3.3e-160 568.9 439 70.2
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 4.3e-160 568.5 427 71.0
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 4.3e-160 568.5 435 70.1
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 5.6e-160 568.2 445 69.9
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 5.6e-160 568.2 429 70.9
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 5.6e-160 568.2 437 71.2
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 1.3e-159 567.0 435 70.3
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 4.8e-159 565.1 434 72.4
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.1e-158 563.9 517 62.5
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 4.0e-158 562.0 431 70.1
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 5.3e-158 561.6 436 69.5
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 6.9e-158 561.2 438 69.4
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 9.0e-158 560.8 431 70.3
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 1.5e-157 560.1 429 70.2
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 1.5e-157 560.1 429 70.4
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 7.6e-157 557.8 432 69.2
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 1.3e-156 557.0 430 69.5
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 2.9e-156 555.8 463 68.7
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 4.9e-156 555.1 370 78.1
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 3.2e-155 552.4 427 70.0
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 3.2e-155 552.4 443 66.8
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 4.2e-155 552.0 435 67.4
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 1.2e-154 550.4 438 68.9
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 2.1e-154 549.7 436 68.1
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 3.5e-154 548.9 425 72.7
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 3.5e-154 548.9 433 68.6
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 4.6e-154 548.5 437 67.7
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 4.6e-154 548.5 436 67.7
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 6.7e-153 544.7 439 67.7
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 6.7e-153 544.7 439 67.7
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 1.1e-152 543.9 439 67.4
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 1.5e-152 543.5 439 67.4
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 1.9e-152 543.1 428 68.7
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 1.9e-152 543.1 439 67.7
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 1.9e-152 543.1 444 66.2
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 1.9e-152 543.1 413 69.2
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 2.5e-152 542.7 435 66.4
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 2.5e-152 542.7 431 68.9
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 3.7e-151 538.9 427 66.7
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 3.7e-151 538.9 472 65.9
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 4.8e-151 538.5 431 65.9
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 6.2e-151 538.1 439 67.4
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 6.2e-151 538.1 431 66.6
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 1.1e-150 537.3 433 66.7
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 4.0e-150 535.4 442 67.2
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 9.0e-150 534.3 411 68.6
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 2.6e-149 532.7 435 66.0
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 2.6e-149 532.7 435 65.5
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 5.8e-149 531.6 442 66.7
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 2.2e-148 529.6 438 66.2
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 3.8e-148 528.9 425 65.9
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 3.2e-147 525.8 429 65.7
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 5.5e-147 525.0 443 64.6
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 7.1e-147 524.6 388 70.9
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 7.9e-146 521.2 438 66.0
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 7.9e-146 521.2 435 64.4
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 1.1e-144 517.3 433 64.9
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 1.9e-144 516.5 421 65.8
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 4.3e-144 515.4 435 64.6
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 3.7e-143 512.3 432 62.5
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 4.8e-143 511.9 417 66.2
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 8.2e-143 511.1 417 68.8
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 6.9e-142 508.1 439 65.6
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 6.5e-140 501.5 433 64.0
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 7.9e-138 494.6 408 66.2
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 1.0e-137 494.2 429 64.6
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 1.4e-137 493.8 432 63.0
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 6.7e-137 491.5 432 64.8
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 9.7e-136 487.6 439 61.3
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 1.5e-133 480.3 423 63.6
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.0e-133 479.9 431 65.4
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 7.7e-133 478.0 442 62.7
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 6.1e-130 468.4 514 55.6
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 1.7e-127 460.3 313 80.2
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 9.1e-126 454.5 432 58.3
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 1.3e-124 450.7 434 59.2
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 3.6e-114 416.0 428 56.3
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 5.2e-113 412.1 428 55.6
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 1.8e-110 403.7 322 70.2
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 1.0e-108 397.9 344 63.1
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 2.5e-107 393.3 300 66.7
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 2.6e-104 383.3 304 67.1
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 2.6e-96 356.7 404 49.0
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 3.4e-96 356.3 409 48.7
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 4.1e-94 349.4 284 64.8
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 5.6e-83 312.4 249 66.7
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 5.1e-76 289.3 205 77.6
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.2e-74 284.6 179 80.4
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 2.2e-71 273.9 416 45.7
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 6.4e-71 272.3 321 52.0
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 3.9e-68 263.1 185 74.6
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 2.2e-63 247.3 177 69.5
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.2e-61 241.5 161 80.7
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 6.0e-61 239.2 195 64.6
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 4.3e-59 233.0 188 67.6
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.7e-53 213.8 147 79.6
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 1.1e-43 181.8 139 61.2
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 2.0e-40 171.0 241 46.9
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 7.9e-37 159.1 120 73.3
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 6.5e-31 139.4 119 64.7
TAR636G1555 Trochodendron aralioides HOM05D001886 ORTHO05D005666 1.3e-28 131.7 331 32.9
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 1.8e-28 131.3 90 71.1
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 2.4e-25 120.9 113 58.4
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.2e-23 114.4 105 61.9
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 2.9e-23 114.0 80 75.0
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 6.5e-23 112.8 113 53.1
Lsat_1_v5_gn_7_25540 Lactuca sativa HOM05D001886 ORTHO05D005666 1.2e-08 65.5 56 64.3
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 2.0e-08 64.7 448 23.2
FAN05G0933 Fragaria x ananassa HOM05D001164 ORTHO05D001031 4.5e-08 63.5 39 79.5
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 6.5e-07 59.7 194 30.4
SMO197G0098 Selaginella moellendorffii HOM05D001886 ORTHO05D005666 7.2e-06 56.2 440 24.1


User provided reference genes

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