Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G2147 Trochodendron aralioides HOM05D005690 ORTHO05D007075 1.1e-136 490.0 244 100.0
TAR636G2049 Trochodendron aralioides HOM05D005690 ORTHO05D007075 6.2e-108 394.4 247 81.0
GSVIVG01016316001 Vitis vinifera HOM05D005690 ORTHO05D007075 5.1e-102 374.8 242 77.7
Dinv11797 Davidia involucrata HOM05D005690 ORTHO05D007075 7.4e-101 370.9 243 77.4
Potri.008G042800 Populus trichocarpa HOM05D005690 ORTHO05D007075 8.1e-100 367.5 246 76.0
CiPaw.02G175700 Carya illinoinensis HOM05D005690 ORTHO05D007075 4.0e-99 365.2 244 75.0
Thecc.10G069500 Theobroma cacao HOM05D005690 ORTHO05D007075 6.9e-99 364.4 243 76.5
Potri.010G219400 Populus trichocarpa HOM05D005690 ORTHO05D007075 2.6e-98 362.5 246 75.2
RcHm_v2.0_Chr1g0363981 Rosa chinensis HOM05D005690 ORTHO05D007075 1.7e-97 359.8 245 73.5
Manes.07G103000 Manihot esculenta HOM05D005690 ORTHO05D007075 3.8e-97 358.6 243 74.9
Duzib114G0556 Durio zibethinus HOM05D005690 ORTHO05D007075 6.4e-97 357.8 243 74.1
Cfa001602 Carpinus fangiana HOM05D005690 ORTHO05D007075 8.4e-97 357.5 244 75.0
Gohir.D06G176800 Gossypium hirsutum HOM05D005690 ORTHO05D007075 1.9e-96 356.3 243 75.3
Gorai.010G204700 Gossypium raimondii HOM05D005690 ORTHO05D007075 1.9e-96 356.3 243 75.3
Sabra08G0029500 Salix brachista HOM05D005690 ORTHO05D007075 2.4e-96 355.9 256 73.0
MD01G1111700 Malus domestica HOM05D005690 ORTHO05D007075 3.2e-96 355.5 242 74.0
FAN10G0816 Fragaria x ananassa HOM05D005690 ORTHO05D007075 9.3e-96 354.0 243 72.4
Gohir.A06G178200 Gossypium hirsutum HOM05D005690 ORTHO05D007075 9.3e-96 354.0 243 74.9
Atru.chr12.697 Acer truncatum HOM05D005690 ORTHO05D007075 2.1e-95 352.8 244 73.0
FvH4_7g20020 Fragaria vesca HOM05D005690 ORTHO05D007075 2.1e-95 352.8 243 72.4
FAN03G1698 Fragaria x ananassa HOM05D005690 ORTHO05D007075 2.1e-95 352.8 243 72.4
FAN06G0212 Fragaria x ananassa HOM05D005690 ORTHO05D007075 2.1e-95 352.8 243 72.4
COL.COLO4_32034 Corchorus olitorius HOM05D005690 ORTHO05D007075 2.7e-95 352.4 244 74.6
Prupe.2G217200 Prunus persica HOM05D005690 ORTHO05D007075 1.0e-94 350.5 242 73.1
MD07G1177900 Malus domestica HOM05D005690 ORTHO05D007075 1.8e-94 349.7 242 72.3
Ciclev10032614m.g Citrus clementina HOM05D005690 ORTHO05D007075 8.7e-94 347.4 242 75.6
FAN01G0973 Fragaria x ananassa HOM05D005690 ORTHO05D007075 1.1e-93 347.1 243 71.2
Haze_16926 Corylus avellana HOM05D005690 ORTHO05D007075 1.5e-93 346.7 244 74.6
Atru.chr12.670 Acer truncatum HOM05D005690 ORTHO05D007075 2.5e-93 345.9 242 71.9
Potri.010G219000 Populus trichocarpa HOM05D005690 ORTHO05D007075 2.5e-93 345.9 217 77.9
TWI38G1302 Tripterygium wilfordii HOM05D005690 ORTHO05D007075 3.3e-93 345.5 242 71.9
Nitab4.5_0000476g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 5.3e-91 338.2 242 71.1
Cpa.g.sc53.43 Carica papaya HOM05D005690 ORTHO05D007075 9.0e-91 337.4 243 74.1
Sabra10G0169300 Salix brachista HOM05D005690 ORTHO05D007075 2.0e-90 336.3 226 74.8
QL08p056659 Quercus lobata HOM05D005690 ORTHO05D007075 3.4e-90 335.5 244 71.3
Peaxi162Scf00108g00166 Petunia axillaris HOM05D005690 ORTHO05D007075 5.8e-90 334.7 243 69.5
MELO3C002879.2 Cucumis melo HOM05D005690 ORTHO05D007075 7.6e-90 334.3 241 71.8
Nn2g13015 Nelumbo nucifera HOM05D005690 ORTHO05D007075 7.6e-90 334.3 215 77.2
CsaV3_5G025890 Cucumis sativus L. HOM05D005690 ORTHO05D007075 1.7e-89 333.2 241 71.0
Eucgr.J01111 Eucalyptus grandis HOM05D005690 ORTHO05D007075 1.7e-89 333.2 242 69.0
Glyma.17G183500 Glycine max HOM05D005690 ORTHO05D007075 1.7e-89 333.2 242 69.0
THA.LOC104802837 Tarenaya hassleriana HOM05D005690 ORTHO05D007075 2.9e-89 332.4 244 71.3
Peaxi162Scf01175g00023 Petunia axillaris HOM05D005690 ORTHO05D007075 8.4e-89 330.9 231 72.3
PGR044G2452 Punica granatum HOM05D005690 ORTHO05D007075 1.9e-88 329.7 245 69.0
Solyc05g056090.3 Solanum lycopersicum HOM05D005690 ORTHO05D007075 5.5e-88 328.2 243 70.0
Sopen05g034500 Solanum pennellii HOM05D005690 ORTHO05D007075 5.5e-88 328.2 243 69.5
Lj2g0014971 Lotus japonicus HOM05D005690 ORTHO05D007075 1.2e-87 327.0 252 68.3
arahy.Tifrunner.gnm1.ann1.08HL34 Arachis hypogaea HOM05D005690 ORTHO05D007075 1.6e-87 326.6 207 75.4
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 1.6e-87 326.6 226 71.2
CAN.G694.84 Capsicum annuum HOM05D005690 ORTHO05D007075 2.1e-87 326.2 243 68.7
arahy.Tifrunner.gnm1.ann1.8E9GH8 Arachis hypogaea HOM05D005690 ORTHO05D007075 2.7e-87 325.9 206 75.2
VMungo0464G0948 Vigna mungo HOM05D005690 ORTHO05D007075 4.6e-87 325.1 242 69.4
Cc02_g11390 Coffea canephora HOM05D005690 ORTHO05D007075 6.0e-87 324.7 243 70.8
MBI05_g11579_MAGBIO Magnolia biondii HOM05D005690 ORTHO05D007075 6.0e-87 324.7 194 81.4
Hma1.2p1_2080F.1_g313490 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 7.9e-87 324.3 256 66.8
Phvul.004G075000 Phaseolus vulgaris HOM05D005690 ORTHO05D007075 1.3e-86 323.6 242 68.6
ECA232G2854 Erigeron canadensis HOM05D005690 ORTHO05D007075 1.8e-86 323.2 245 68.6
MSTRG.373 Avicennia marina HOM05D005690 ORTHO05D007075 2.3e-86 322.8 243 70.4
Nitab4.5_0000233g0230 Nicotiana tabacum HOM05D005690 ORTHO05D007075 3.0e-86 322.4 196 79.1
Nitab4.5_0012288g0020 Nicotiana tabacum HOM05D005690 ORTHO05D007075 3.0e-86 322.4 243 68.3
CANSAT56G3535 Cannabis sativa HOM05D005690 ORTHO05D007075 3.9e-86 322.0 247 67.2
Nitab4.5_0009003g0010 Nicotiana tabacum HOM05D005690 ORTHO05D007075 5.1e-86 321.6 209 74.6
PGSC0003DMG400023460 Solanum tuberosum HOM05D005690 ORTHO05D007075 6.7e-86 321.2 243 67.9
Lalb_Chr19g0129571 Lupinus albus HOM05D005690 ORTHO05D007075 1.1e-85 320.5 246 69.9
HanXRQChr09g0246501 Helianthus annuus HOM05D005690 ORTHO05D007075 1.3e-84 317.0 246 66.7
Hma1.2p1_0453F.1_g156020 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 1.3e-84 317.0 222 72.1
Lsat_1_v5_gn_9_67140 Lactuca sativa HOM05D005690 ORTHO05D007075 2.2e-84 316.2 246 66.3
PSO339G2382 Papaver somniferum HOM05D005690 ORTHO05D007075 2.8e-84 315.8 244 69.3
PSO384G2564 Papaver somniferum HOM05D005690 ORTHO05D007075 2.8e-84 315.8 245 70.2
TPR.G36634 Trifolium pratense HOM05D005690 ORTHO05D007075 1.4e-83 313.5 207 73.9
Ca_04676_v3 Cicer arietinum L. HOM05D005690 ORTHO05D007075 2.4e-83 312.8 251 64.9
Sed0019941 Sechium edule HOM05D005690 ORTHO05D007075 2.4e-83 312.8 243 69.1
vmacro04884 Vaccinium macrocarpon HOM05D005690 ORTHO05D007075 9.0e-83 310.8 217 71.0
Medtr6g033405 Medicago truncatula HOM05D005690 ORTHO05D007075 1.5e-82 310.1 209 73.2
Hund19342 Selenicereus undatus HOM05D005690 ORTHO05D007075 1.5e-82 310.1 242 66.1
Sed0011214 Sechium edule HOM05D005690 ORTHO05D007075 2.6e-82 309.3 244 67.2
Migut.F01989 Erythranthe guttata HOM05D005690 ORTHO05D007075 5.9e-82 308.1 244 68.9
Aa31LG9G7550 Aethionema arabicum HOM05D005690 ORTHO05D007075 2.9e-81 305.8 242 64.9
ATR1159G074 Amborella trichopoda HOM05D005690 ORTHO05D007075 5.0e-81 305.1 223 71.3
AUR62027946 Chenopodium quinoa HOM05D005690 ORTHO05D007075 1.4e-80 303.5 247 65.2
Aqoxy6G02013 Aquilegia oxysepala HOM05D005690 ORTHO05D007075 2.5e-80 302.8 244 67.6
Rhsim03G0123000 Rhododendron simsii HOM05D005690 ORTHO05D007075 4.2e-80 302.0 231 64.5
Carub.0004s1755 Capsella rubella HOM05D005690 ORTHO05D007075 7.2e-80 301.2 250 64.4
AL4G31900 Arabidopsis lyrata HOM05D005690 ORTHO05D007075 9.4e-80 300.8 244 63.9
AT2G35790 Arabidopsis thaliana HOM05D005690 ORTHO05D007075 9.4e-80 300.8 244 64.8
CDE04G0636 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 9.4e-80 300.8 222 68.0
HanXRQChr17g0563371 Helianthus annuus HOM05D005690 ORTHO05D007075 9.4e-80 300.8 188 76.1
SGA_v2.0_scaffold28G12052 Striga asiatica HOM05D005690 ORTHO05D007075 7.9e-79 297.7 243 66.7
ClCG09G020510 Citrullus lanatus HOM05D005690 ORTHO05D007075 1.0e-78 297.4 215 70.2
EL10Ac2g03578 Beta vulgaris HOM05D005690 ORTHO05D007075 1.4e-78 297.0 206 72.3
unitig_0.g529 Utricularia gibba HOM05D005690 ORTHO05D007075 1.4e-78 297.0 202 71.8
AUR62020766 Chenopodium quinoa HOM05D005690 ORTHO05D007075 3.0e-78 295.8 199 73.4
HPP92_003607 Vanilla planifolia HOM05D005690 ORTHO05D007075 3.0e-78 295.8 202 73.3
A04p27260 Brassica napus HOM05D005690 ORTHO05D007075 3.9e-78 295.4 251 61.8
BolC4t27955H Brassica oleracea HOM05D005690 ORTHO05D007075 5.1e-78 295.0 245 62.9
CARHR130040 Cardamine hirsuta HOM05D005690 ORTHO05D007075 8.8e-78 294.3 244 63.5
SalBow4G1295 Salvia bowleyana HOM05D005690 ORTHO05D007075 1.1e-77 293.9 230 64.8
SalBow3G1299 Salvia bowleyana HOM05D005690 ORTHO05D007075 1.5e-77 293.5 243 63.8
Ah.16g108410 Amaranthus hybridus HOM05D005690 ORTHO05D007075 1.3e-76 290.4 199 72.4
Sp4g18050 Schrenkiella parvula HOM05D005690 ORTHO05D007075 2.2e-76 289.7 245 62.9
BcaC01g05707 Brassica carinata HOM05D005690 ORTHO05D007075 3.7e-76 288.9 244 62.7
C03p22980 Brassica napus HOM05D005690 ORTHO05D007075 3.7e-76 288.9 244 62.7
BraA04t18224Z Brassica rapa HOM05D005690 ORTHO05D007075 3.7e-76 288.9 252 61.1
C04p64770 Brassica napus HOM05D005690 ORTHO05D007075 4.8e-76 288.5 250 61.6
Thhalv10017166m.g Eutrema salsugineum HOM05D005690 ORTHO05D007075 1.4e-75 287.0 246 62.6
BcaB06g28872 Brassica carinata HOM05D005690 ORTHO05D007075 4.1e-75 285.4 250 60.8
Zm00001eb064810 Zea mays HOM05D005690 ORTHO05D007075 2.0e-74 283.1 217 68.2
A03p19730 Brassica napus HOM05D005690 ORTHO05D007075 2.6e-74 282.7 247 61.5
BcaC02g07668 Brassica carinata HOM05D005690 ORTHO05D007075 5.0e-73 278.5 217 66.8
Eucgr.J01110 Eucalyptus grandis HOM05D005690 ORTHO05D007075 6.5e-73 278.1 230 59.6
CDE07G1130 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 1.0e-70 270.8 201 67.7
Os03g0853800 Oryza sativa ssp. japonica HOM05D005690 ORTHO05D007075 1.1e-69 267.3 168 78.0
BcaB01g03881 Brassica carinata HOM05D005690 ORTHO05D007075 5.7e-69 265.0 251 58.6
CSS0000246 Camellia sinensis var. sinensis HOM05D005690 ORTHO05D007075 3.1e-67 259.2 203 68.5
SEGI_15078 Sequoiadendron giganteum HOM05D005690 ORTHO05D007075 1.0e-65 254.2 244 53.7
CiPaw.01G275500 Carya illinoinensis HOM05D005690 ORTHO05D007075 3.5e-58 229.2 201 61.7
Peaxi162Scf00108g00173 Petunia axillaris HOM05D005690 ORTHO05D007075 4.4e-53 212.2 122 81.1
Sc06g0001780 Simmondsia chinensis HOM05D005690 ORTHO05D007075 2.2e-52 209.9 121 81.8
Lj8C97T4 Lonicera japonica HOM05D005690 ORTHO05D007075 3.1e-51 206.1 121 76.9
Nitab4.5_0003072g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 4.5e-50 202.2 183 57.4
Psat1g099440 Pisum sativum HOM05D005690 ORTHO05D007075 4.0e-46 189.1 163 60.1
BcaB01g03882 Brassica carinata HOM05D005690 ORTHO05D007075 3.4e-45 186.0 112 76.8
AagrBONN_evm.TU.Sc2ySwM_362.1612 Anthoceros agrestis HOM05D005690 ORTHO05D007075 5.7e-45 185.3 142 59.9
Pp3c10_15170 Physcomitrium patens HOM05D005690 ORTHO05D007075 2.8e-44 183.0 204 45.6
Mapoly0033s0041 Marchantia polymorpha HOM05D005690 ORTHO05D007075 6.3e-44 181.8 181 45.9
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 8.9e-38 161.4 175 48.6
Mapoly0033s0042 Marchantia polymorpha HOM05D005690 ORTHO05D007075 2.2e-36 156.8 152 46.7
SMO239G0063 Selaginella moellendorffii HOM05D005690 ORTHO05D007075 4.4e-29 132.5 179 37.4
Lalb_Chr01g0010161 Lupinus albus HOM05D005690 ORTHO05D007075 7.0e-27 125.2 69 82.6
Nn2g10688 Nelumbo nucifera HOM05D005690 ORTHO05D007075 4.6e-18 95.9 101 55.4
Cre12.g540051 Chlamydomonas reinhardtii HOM05D005690 ORTHO05D007075 5.1e-17 92.4 143 32.9
Lalb_Chr01g0010151 Lupinus albus HOM05D005690 ORTHO05D007075 3.6e-15 86.3 118 49.2
CDE07G0610 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 3.1e-14 83.2 124 41.9
MCO03G451 Micromonas commoda HOM05D005690 ORTHO05D007075 1.5e-13 80.9 132 33.3
TAR369G0086 Trochodendron aralioides HOM05D005690 ORTHO05D414818 7.1e-11 72.0 57 68.4
HanXRQChr10g0292531 Helianthus annuus HOM05D005690 ORTHO05D007075 5.6e-08 62.4 67 52.2


User provided reference genes

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