Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 0.0e+00 2359.3 1216 100.0
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 0.0e+00 1880.5 1213 80.8
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 0.0e+00 1692.9 1221 73.9
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1671.8 1207 74.2
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 0.0e+00 1666.0 1229 73.3
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1657.9 1207 74.2
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 0.0e+00 1639.0 1207 72.7
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 0.0e+00 1637.5 1225 71.8
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 0.0e+00 1629.0 1213 71.6
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 0.0e+00 1616.7 1252 69.9
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1598.6 1251 69.9
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 0.0e+00 1597.0 1224 70.8
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1596.3 1213 70.4
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 0.0e+00 1583.2 1203 71.0
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 0.0e+00 1578.5 1229 69.2
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1572.0 1223 69.3
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1569.7 1225 69.2
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1563.5 1226 69.3
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1563.1 1225 69.1
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1562.4 1220 70.2
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 0.0e+00 1559.3 1217 69.8
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1556.2 1218 69.3
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1555.4 1223 70.1
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1550.8 1218 69.0
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 0.0e+00 1543.5 1217 68.5
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 0.0e+00 1539.6 1221 67.5
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1536.2 1212 68.6
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 0.0e+00 1531.9 1218 68.6
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 0.0e+00 1528.5 1210 67.3
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1527.7 1234 68.0
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1527.7 1219 68.4
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1515.4 1224 67.1
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1508.8 1238 65.9
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 0.0e+00 1507.3 1225 67.8
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 0.0e+00 1499.6 1218 67.3
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1495.7 1238 65.8
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 0.0e+00 1495.3 1220 65.7
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1494.2 1238 65.5
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1492.6 1238 65.5
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 0.0e+00 1491.9 1221 66.9
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1488.0 1193 67.2
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 0.0e+00 1486.5 1245 65.9
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1483.4 1218 66.3
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 0.0e+00 1479.5 1234 66.8
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1477.6 1218 66.4
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 0.0e+00 1476.5 1210 66.5
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 0.0e+00 1474.9 1210 66.0
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 0.0e+00 1474.9 1215 65.8
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 0.0e+00 1468.8 1216 66.7
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1465.7 1219 65.9
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1465.7 1211 66.1
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 0.0e+00 1463.0 1227 65.9
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 0.0e+00 1463.0 1350 62.1
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 0.0e+00 1455.3 1225 65.7
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1453.7 1163 66.8
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 0.0e+00 1451.8 1219 66.2
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 0.0e+00 1448.0 1218 65.7
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 0.0e+00 1442.2 1216 65.0
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 0.0e+00 1440.2 1222 65.1
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1434.1 1220 65.1
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 0.0e+00 1434.1 1218 64.7
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1432.9 1231 63.7
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 0.0e+00 1429.8 1206 65.3
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 0.0e+00 1417.5 1219 64.9
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1416.7 1262 62.9
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 0.0e+00 1416.7 1248 63.5
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1416.7 1262 62.9
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 0.0e+00 1415.6 1241 63.3
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 0.0e+00 1414.4 1211 64.5
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 0.0e+00 1414.1 1207 63.5
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 1414.1 1262 62.8
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1413.3 1223 64.2
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1413.3 1223 64.2
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 0.0e+00 1409.0 1422 58.0
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 0.0e+00 1404.0 1185 64.0
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 0.0e+00 1402.9 1215 63.4
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 0.0e+00 1402.1 1180 65.8
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 0.0e+00 1397.1 1216 63.6
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1394.8 1222 62.8
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1393.6 1226 62.5
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1392.5 1226 62.5
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 0.0e+00 1392.5 1154 65.9
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1375.5 1213 62.8
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 0.0e+00 1365.1 1251 61.6
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1355.1 1245 61.5
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1354.7 1203 62.3
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1349.3 1240 61.4
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 0.0e+00 1346.6 1154 65.0
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1345.9 1211 61.7
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1334.7 1201 61.4
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1319.7 1147 63.5
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 0.0e+00 1261.5 1030 65.3
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 0.0e+00 1239.9 1192 59.0
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 0.0e+00 1238.8 1066 62.9
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1236.5 1208 58.9
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 0.0e+00 1211.8 1186 58.6
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1183.7 1073 61.0
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 0.0e+00 1167.9 1180 57.2
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 0.0e+00 1146.0 1132 56.9
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1143.6 1201 55.9
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 0.0e+00 1142.5 839 72.9
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1139.0 976 64.1
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 0.0e+00 1122.1 1147 55.0
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1115.5 1223 54.5
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 0.0e+00 1114.4 1246 53.1
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 8.5e-291 1004.2 946 58.9
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 2.8e-286 989.2 789 68.8
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 7.8e-260 901.4 1264 44.1
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 1.0e-259 901.0 745 63.9
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 4.3e-258 895.6 685 69.2
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.5e-250 870.5 681 67.8
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 1.5e-239 833.9 1285 41.6
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 1.3e-235 820.8 637 67.0
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 1.4e-229 800.8 669 63.4
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 7.6e-223 778.5 1168 42.6
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 4.3e-218 762.7 617 65.0
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 1.8e-211 740.7 701 59.6
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 2.0e-207 727.2 696 58.8
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 1.0e-206 724.9 600 65.7
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 4.4e-194 682.9 1145 38.8
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 1.8e-187 661.0 597 61.1
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 2.0e-178 630.9 523 63.5
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 1.2e-159 568.5 1514 31.0
Solyc06g042960.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 3.3e-157 560.5 459 65.6
Nitab4.5_0005137g0010 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.2e-154 552.0 458 65.5
Peaxi162Scf00658g00725 Petunia axillaris HOM05D004065 ORTHO05D004806 3.6e-148 530.4 433 66.1
Cpa.g.sc1.377 Carica papaya HOM05D004065 ORTHO05D004806 2.4e-123 448.0 388 66.5
QL08p059051 Quercus lobata HOM05D004065 ORTHO05D004806 5.4e-120 436.8 406 63.1
SHI22587 Sapria himalayana HOM05D004065 ORTHO05D004806 8.4e-105 386.3 429 51.7
Psat6g236080 Pisum sativum HOM05D004065 ORTHO05D004806 1.3e-89 335.9 366 55.2
CiPaw.02G182400 Carya illinoinensis HOM05D004065 ORTHO05D004806 6.5e-89 333.6 263 70.3
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 2.5e-88 331.6 315 57.8
Nn8g40630 Nelumbo nucifera HOM05D004065 ORTHO05D004806 3.2e-88 331.3 242 72.7
Ah.16g107250 Amaranthus hybridus HOM05D004065 ORTHO05D004806 1.6e-87 328.9 483 46.6
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.5e-82 310.8 1145 28.0
SHI22586 Sapria himalayana HOM05D004065 ORTHO05D004806 2.3e-78 298.5 276 55.4
FAN06G4849 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.5e-77 295.8 399 45.1
BolC8t48103H Brassica oleracea HOM05D004065 ORTHO05D004806 1.2e-71 276.2 225 61.8
Os01g0974300 Oryza sativa ssp. japonica HOM05D004065 ORTHO05D004806 1.7e-60 239.2 180 65.6
Hma1.2p1_1137F.1_g260730 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 1.1e-59 236.5 204 64.2
FvH4_7g22002 Fragaria vesca HOM05D004065 ORTHO05D004806 7.2e-56 223.8 130 86.9
FAN18G1692 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.0e-54 218.0 210 57.6
FAN14G4766 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.6e-53 215.3 208 57.7
FAN03G2077 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.4e-53 214.9 208 57.2
FAN25G3689 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.7e-52 211.5 203 58.1
Oeu012240.1 Olea europaea HOM05D004065 ORTHO05D004806 3.7e-44 184.9 176 60.2
FAN06G1862 Fragaria x ananassa HOM05D004065 ORTHO05D004806 9.2e-43 180.3 134 64.2
Hma1.2p1_0067F.1_g037070 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 2.0e-42 179.1 183 55.7
FAN11G1748 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.9e-42 177.6 130 65.4
FvH4_7g26620 Fragaria vesca HOM05D004065 ORTHO05D004806 8.6e-41 173.7 130 64.6
FAN08G2500 Fragaria x ananassa HOM05D000391 ORTHO05D000293 1.5e-40 172.9 150 57.3
MBI05_g10364_MAGBIO Magnolia biondii HOM05D004065 ORTHO05D004806 7.3e-40 170.6 106 75.5
FAN01G0794 Fragaria x ananassa HOM05D004065 ORTHO05D004806 9.8e-37 160.2 181 54.1
FAN01G2840 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.9e-35 156.0 133 67.7
FAN25G3365 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.0e-35 154.1 111 65.8
AagrBONN_evm.TU.Sc2ySwM_344.348 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.1e-27 130.2 229 40.2
Nitab4.5_0005137g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.2e-26 126.7 95 74.7
FAN03G1547 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.7e-26 125.6 114 57.9
Nitab4.5_0001836g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 7.8e-26 124.0 96 75.0
AagrBONN_evm.TU.Sc2ySwM_344.350 Anthoceros agrestis HOM05D004065 ORTHO05D004806 5.8e-21 107.8 64 79.7
SHI22581 Sapria himalayana HOM05D004065 ORTHO05D004806 6.0e-18 97.8 178 39.9
arahy.Tifrunner.gnm1.ann1.JMTW06 Arachis hypogaea HOM05D004065 ORTHO05D004806 2.5e-16 92.4 57 82.5
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 4.3e-16 91.7 135 46.7
Peaxi162Scf00658g00733 Petunia axillaris HOM05D004065 ORTHO05D004806 9.6e-16 90.5 93 61.3
AagrBONN_evm.TU.Sc2ySwM_344.349 Anthoceros agrestis HOM05D004065 ORTHO05D004806 2.1e-15 89.4 252 27.4
Solyc06g042980.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 1.1e-14 87.0 107 52.3
Cre17.g707100 Chlamydomonas reinhardtii HOM05D004065 ORTHO05D004806 4.9e-12 78.2 123 35.8
Gohir.A12G155100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 9.3e-11 73.9 55 63.6
TAR636G1681 Trochodendron aralioides HOM05D000172 ORTHO05D000273 9.3e-11 73.9 47 83.0
Cfa005276 Carpinus fangiana HOM05D004065 ORTHO05D020362 2.1e-10 72.8 78 62.8
SHI22580 Sapria himalayana HOM05D004065 ORTHO05D004806 3.3e-08 65.5 132 43.9
Gohir.D13G142400 Gossypium hirsutum HOM05D000260 ORTHO05D020362 7.3e-08 64.3 63 66.7
Gorai.002G055300 Gossypium raimondii HOM05D000671 ORTHO05D000797 2.1e-07 62.8 67 61.2
Gohir.D02G008125 Gossypium hirsutum HOM05D004065 ORTHO05D000318 2.8e-07 62.4 63 65.1
Gorai.005G009800 Gossypium raimondii HOM05D004065 ORTHO05D020362 2.8e-07 62.4 63 65.1
SHI22582 Sapria himalayana HOM05D004065 ORTHO05D004806 4.8e-07 61.6 83 44.6
Gohir.D05G040350 Gossypium hirsutum HOM05D004065 ORTHO05D020362 1.1e-06 60.5 62 64.5
SHI22584 Sapria himalayana HOM05D004065 ORTHO05D004806 6.9e-06 57.8 106 42.5


User provided reference genes

Program Settings